AT4G24300

meiotic chromosome separation

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0000800
Physical Location & Seq
Reverse (-)
12598980 .. 12600213
1234 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G24300.1

Sequence Viewer

Length: 438 bp
ATGGTTGTGGCGTCCATCGTCAGGTCTGTAGCAATGTCGCGGGATATGAACGATCTCCAATACTTGAGGGGCATTTCTCTTCTACAAGGGCTAAAACCCTGGCTAAGGTATTTGGATGCCAATGAACACCATAAGTTTCTCAAGCTGGTCTTGTCAGATATGGGAGAGTGTGCTCTCTCGGTAATTAGAGAAGCAGAGCGTTTCGATGAGGCTTTTGTGCATTCTTTTTGCATCTCTACACTAGAGGAATATTCTGTATCCCCGTTGCCAAAATGTCATTTTTATAAGTTCTCCCGCCAGGTACTTTCTTTACTGTTTCCGTCCAAGGAGGCAAAAACATCACTAAATCTTAAAATTATGATGTCTGTGTTGAAATTTGTGGCAGGTGAATTCCAGAACCAGCAGTCTTCAAGCAGAGTTCGATATGCAGCTGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000070 GO:0000212 GO:0000226 GO:0000228 GO:0000278 GO:0000280 GO:0000281 GO:0000793 GO:0000794 GO:0000819 GO:0000902 GO:0000910 GO:0000911 GO:0001775 GO:0003002 GO:0003006 GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005694 GO:0005737 GO:0005813 GO:0005815 GO:0005819 GO:0005829 GO:0005856 GO:0005874 GO:0005886 GO:0005938 GO:0006508 GO:0006807 GO:0006810 GO:0006887 GO:0006915 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007051 GO:0007059 GO:0007063 GO:0007088 GO:0007098 GO:0007127 GO:0007143 GO:0007275 GO:0007276 GO:0007281 GO:0007292 GO:0007338 GO:0007343 GO:0007346 GO:0007389 GO:0008104 GO:0008150 GO:0008152 GO:0008219 GO:0008233 GO:0008234 GO:0009566 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009798 GO:0009826 GO:0009888 GO:0009896 GO:0009948 GO:0009949 GO:0009952 GO:0009960 GO:0009987 GO:0010154 GO:0010467 GO:0010564 GO:0010638 GO:0010639 GO:0010948 GO:0010965 GO:0012501 GO:0012505 GO:0015630 GO:0016020 GO:0016043 GO:0016049 GO:0016192 GO:0016485 GO:0016787 GO:0017156 GO:0017157 GO:0019538 GO:0019953 GO:0022402 GO:0022412 GO:0022414 GO:0030071 GO:0030141 GO:0030154 GO:0030496 GO:0030703 GO:0030997 GO:0031023 GO:0031331 GO:0031410 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0031982 GO:0032153 GO:0032154 GO:0032155 GO:0032270 GO:0032436 GO:0032501 GO:0032502 GO:0032504 GO:0032506 GO:0032878 GO:0032879 GO:0032886 GO:0032940 GO:0032989 GO:0033036 GO:0033043 GO:0033044 GO:0033045 GO:0033046 GO:0033047 GO:0033206 GO:0034613 GO:0040001 GO:0040007 GO:0040012 GO:0040038 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043900 GO:0043901 GO:0044238 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0044703 GO:0045055 GO:0045132 GO:0045143 GO:0045732 GO:0045786 GO:0045787 GO:0045840 GO:0045842 GO:0045862 GO:0045875 GO:0045876 GO:0045931 GO:0046605 GO:0046903 GO:0048285 GO:0048316 GO:0048468 GO:0048477 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048580 GO:0048589 GO:0048608 GO:0048609 GO:0048646 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0051046 GO:0051049 GO:0051128 GO:0051129 GO:0051130 GO:0051179 GO:0051234 GO:0051239 GO:0051247 GO:0051276 GO:0051293 GO:0051301 GO:0051304 GO:0051306 GO:0051307 GO:0051321 GO:0051493 GO:0051604 GO:0051640 GO:0051641 GO:0051649 GO:0051653 GO:0051656 GO:0051704 GO:0051726 GO:0051781 GO:0051783 GO:0051785 GO:0051983 GO:0051984 GO:0051985 GO:0060467 GO:0060468 GO:0060471 GO:0060473 GO:0060560 GO:0060627 GO:0061062 GO:0061458 GO:0061640 GO:0061982 GO:0062033 GO:0065001 GO:0065007 GO:0070011 GO:0070013 GO:0070090 GO:0070507 GO:0070727 GO:0071704 GO:0071840 GO:0071944 GO:0072686 GO:0072687 GO:0080154 GO:0090068 GO:0097708 GO:0098590 GO:0098813 GO:0099080 GO:0099081 GO:0099503 GO:0099512 GO:0099513 GO:0099568 GO:0140013 GO:0140014 GO:0140096 GO:1901564 GO:1901800 GO:1901970 GO:1901987 GO:1901989 GO:1901990 GO:1901992 GO:1902099 GO:1902101 GO:1902410 GO:1902850 GO:1903046 GO:1903047 GO:1903052 GO:1903364 GO:1903530 GO:1905818 GO:1905820 GO:2000026 GO:2000114 GO:2000241 GO:2000242 GO:2001251 GO:2001252
KEGG Pathways
Metabolic & Signaling
ko04110 ko04111 ko04113 ko04114 map04110 map04111 map04113 map04114
Pfam Domains
Protein Families
Peptidase_C50

Protein Analysis

145

Amino Acids

16.61

Weight (kDa)

9.05

Isoelectric Point (pI)

49.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_ESP1 PF25110 2 - 105 2e-28 Separase-like, TPR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 285
AarI CACCTGC 1 cut(s) 374
Acc36I ACCTGC 1 cut(s) 374
AccII CGCG 1 cut(s) 40
AciI CCGC 2 cut(s) 40, 295
AcsI RAATTY 2 cut(s) 374, 389
AcyI GRCGYC 1 cut(s) 11
AfaI GTAC 1 cut(s) 303
AfiI CCNNNNNNNGG 2 cut(s) 21, 105
AgsI TTSAA 2 cut(s) 373, 411
AjnI CCWGG 2 cut(s) 98, 297
AluBI AGCT 2 cut(s) 145, 431
AluI AGCT 2 cut(s) 145, 431
Alw21I GWGCWC 1 cut(s) 175
ApeKI GCWGC 1 cut(s) 428
ApoI RAATTY 2 cut(s) 374, 389
AsuHPI GGTGA 1 cut(s) 398
BbsI GAAGAC 1 cut(s) 399
Bbv12I GWGCWC 1 cut(s) 175
BccI CCATC 1 cut(s) 23
BciT130I CCWGG 2 cut(s) 100, 299
BciVI GTATCC 1 cut(s) 268
BfaI CTAG 1 cut(s) 242
BfmI CTRYAG 1 cut(s) 27
BfuAI ACCTGC 1 cut(s) 374
BfuI GTATCC 1 cut(s) 268
BisI GCNGC 1 cut(s) 429
BlsI GCNGC 1 cut(s) 430
Bme1390I CCNGG 2 cut(s) 100, 299
BmrFI CCNGG 2 cut(s) 100, 299
BmsI GCATC 2 cut(s) 106, 240
BpiI GAAGAC 1 cut(s) 399
Bpu10I CCTNAGC 1 cut(s) 104
BpuEI CTTGAG 2 cut(s) 85, 125
BsaHI GRCGYC 1 cut(s) 11
BsaJI CCNNGG 2 cut(s) 98, 324
Bsc4I CCNNNNNNNGG 2 cut(s) 21, 105
Bse3DI GCAATG 1 cut(s) 39
BseBI CCWGG 2 cut(s) 100, 299
BseDI CCNNGG 2 cut(s) 98, 324
BseGI GGATG 1 cut(s) 121
BseLI CCNNNNNNNGG 2 cut(s) 21, 105
BseMI GCAATG 1 cut(s) 39
Bsh1236I CGCG 1 cut(s) 40
BsiHKAI GWGCWC 1 cut(s) 175
BslI CCNNNNNNNGG 2 cut(s) 21, 105
BsmI GAATGC 1 cut(s) 220
Bsp1286I GDGCHC 1 cut(s) 175
Bsp143I GATC 1 cut(s) 52
BspACI CCGC 2 cut(s) 40, 295
BspFNI CGCG 1 cut(s) 40
BspMI ACCTGC 1 cut(s) 374
BsrDI GCAATG 1 cut(s) 39
BssECI CCNNGG 2 cut(s) 98, 324
BssMI GATC 1 cut(s) 52
BssNI GRCGYC 1 cut(s) 11
BssT1I CCWWGG 1 cut(s) 324
Bst2UI CCWGG 2 cut(s) 100, 299
Bst4CI ACNGT 1 cut(s) 315
Bst6I CTCTTC 1 cut(s) 84
BstACI GRCGYC 1 cut(s) 11
BstDEI CTNAG 1 cut(s) 104
BstENI CCTNNNNNAGG 1 cut(s) 103
BstF5I GGATG 1 cut(s) 121
BstFNI CGCG 1 cut(s) 40
BstKTI GATC 1 cut(s) 55
BstMBI GATC 1 cut(s) 52
BstNI CCWGG 2 cut(s) 100, 299
BstSCI CCNGG 2 cut(s) 98, 297
BstSFI CTRYAG 1 cut(s) 27
BstUI CGCG 1 cut(s) 40
BstV2I GAAGAC 1 cut(s) 399
BsuI GTATCC 1 cut(s) 268
BtsCI GGATG 1 cut(s) 121
BveI ACCTGC 1 cut(s) 374
Csp6I GTAC 1 cut(s) 302
CviJI RGCY 5 cut(s) 91, 103, 145, 212, 431
CviKI_1 RGCY 5 cut(s) 91, 103, 145, 212, 431
CviQI GTAC 1 cut(s) 302
DdeI CTNAG 1 cut(s) 104
DpnI GATC 1 cut(s) 54
DpnII GATC 1 cut(s) 52
Eam1104I CTCTTC 1 cut(s) 84
EarI CTCTTC 1 cut(s) 84
Eco130I CCWWGG 1 cut(s) 324
EcoNI CCTNNNNNAGG 1 cut(s) 103
EcoRI GAATTC 1 cut(s) 389
EcoRII CCWGG 2 cut(s) 98, 297
EcoT14I CCWWGG 1 cut(s) 324
ErhI CCWWGG 1 cut(s) 324
FaiI YATR 6 cut(s) 47, 132, 161, 285, 359, 426
FalI AAGNNNNNCTT 2 cut(s) 134, 166
FauI CCCGC 2 cut(s) 33, 302
Fnu4HI GCNGC 1 cut(s) 429
FokI GGATG 1 cut(s) 128
Fsp4HI GCNGC 1 cut(s) 429
FspBI CTAG 1 cut(s) 242
GluI GCNGC 1 cut(s) 429
Hin1I GRCGYC 1 cut(s) 11
HphI GGTGA 1 cut(s) 398
Hpy188I TCNGA 1 cut(s) 157
Hpy188III TCNNGA 1 cut(s) 394
HpyCH4III ACNGT 1 cut(s) 315
HpyCH4V TGCA 3 cut(s) 220, 231, 428
HpyF3I CTNAG 1 cut(s) 104
Hsp92I GRCGYC 1 cut(s) 11
Kzo9I GATC 1 cut(s) 52
LpnPI CCDG 9 cut(s) 7, 85, 112, 131, 284, 311, 369, 407, 413
LweI GCATC 2 cut(s) 106, 240
MaeI CTAG 1 cut(s) 242
MalI GATC 1 cut(s) 54
MboI GATC 1 cut(s) 52
MboII GAAGA 2 cut(s) 71, 399
MhlI GDGCHC 1 cut(s) 175
MluCI AATT 4 cut(s) 183, 354, 374, 389
MnlI CCTC 4 cut(s) 60, 202, 238, 322
MseI TTAA 1 cut(s) 351
MspA1I CMGCKG 1 cut(s) 431
MspR9I CCNGG 2 cut(s) 100, 299
Mva1269I GAATGC 1 cut(s) 220
MvaI CCWGG 2 cut(s) 100, 299
MvnI CGCG 1 cut(s) 40
NdeII GATC 1 cut(s) 52
PaqCI CACCTGC 1 cut(s) 374
PctI GAATGC 1 cut(s) 220
PkrI GCNGC 1 cut(s) 430
PsiI TTATAA 1 cut(s) 285
Psp6I CCWGG 2 cut(s) 98, 297
PspGI CCWGG 2 cut(s) 98, 297
PvuII CAGCTG 1 cut(s) 431
RsaI GTAC 1 cut(s) 303
RsaNI GTAC 1 cut(s) 302
SaqAI TTAA 1 cut(s) 351
SatI GCNGC 1 cut(s) 429
Sau3AI GATC 1 cut(s) 52
ScrFI CCNGG 2 cut(s) 100, 299
SduI GDGCHC 1 cut(s) 175
SetI ASST 6 cut(s) 26, 110, 147, 303, 388, 433
SfaNI GCATC 2 cut(s) 106, 240
SfcI CTRYAG 1 cut(s) 27
SmlI CTYRAG 2 cut(s) 64, 140
SmoI CTYRAG 2 cut(s) 64, 140
Sse9I AATT 4 cut(s) 183, 354, 374, 389
SsiI CCGC 2 cut(s) 40, 295
SspI AATATT 1 cut(s) 251
SspMI CTAG 1 cut(s) 242
StyD4I CCNGG 2 cut(s) 98, 297
StyI CCWWGG 1 cut(s) 324
TaaI ACNGT 1 cut(s) 315
TaqI TCGA 2 cut(s) 204, 421
TasI AATT 4 cut(s) 183, 354, 374, 389
Tru1I TTAA 1 cut(s) 351
Tru9I TTAA 1 cut(s) 351
TseI GCWGC 1 cut(s) 428
TspDTI ATGAA 2 cut(s) 62, 138
TspGWI ACGGA 1 cut(s) 309
XagI CCTNNNNNAGG 1 cut(s) 103
XapI RAATTY 2 cut(s) 374, 389
XspI CTAG 1 cut(s) 242
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.