Rh7CG381200

separase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0000800
Physical Location & Seq
Reverse (-)
48033238 .. 48034728
1491 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG381200.1

Sequence Viewer

Length: 306 bp
ATGGCATCACGTAATGAATCTAATGGTGGCGAGAACTTGTCTGAGTTGGCCAACAAACTAGTATTAGAAGCAGTGAATGAGCTTGAAGGTTTACATTCTTCTGTAAATATAGAGCCAACAATATTAGTTCTGGACTACGAGGTGCAGGGGAAGGCTGGATGTGCACCTCTTGCTGAAGAATTGGCAGTAGCGTTGAAAAGCCATGATCTATTTATGTACATTGGCCATGGATGCGGGCAACAATTATACAATATATTCCTAGACTTGAGATTCAGAGACTGGAACACTGTGCCTCAACTCTCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000278 GO:0000280 GO:0000281 GO:0000902 GO:0000910 GO:0000911 GO:0003006 GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005819 GO:0005856 GO:0005874 GO:0006508 GO:0006807 GO:0006810 GO:0006887 GO:0006996 GO:0007049 GO:0007059 GO:0007063 GO:0007275 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009826 GO:0009888 GO:0009960 GO:0009987 GO:0010154 GO:0010564 GO:0010638 GO:0015630 GO:0016043 GO:0016049 GO:0016192 GO:0016787 GO:0019538 GO:0022402 GO:0022414 GO:0032501 GO:0032502 GO:0032506 GO:0032878 GO:0032940 GO:0032989 GO:0033043 GO:0033044 GO:0033045 GO:0040007 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044238 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0045132 GO:0045787 GO:0045876 GO:0046903 GO:0048285 GO:0048316 GO:0048518 GO:0048522 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051128 GO:0051130 GO:0051179 GO:0051234 GO:0051301 GO:0051304 GO:0051307 GO:0051321 GO:0051726 GO:0051983 GO:0051984 GO:0060560 GO:0061458 GO:0061640 GO:0065007 GO:0070011 GO:0071704 GO:0071840 GO:0072686 GO:0090068 GO:0098813 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0140013 GO:0140096 GO:1901564 GO:1902410 GO:1903046 GO:1903047 GO:2000114 GO:2001252
KEGG Pathways
Metabolic & Signaling
ko04110 ko04111 ko04113 ko04114 map04110 map04111 map04113 map04114
Pfam Domains
Protein Families
Peptidase_C50

Protein Analysis

101

Amino Acids

11.13

Weight (kDa)

4.6

Isoelectric Point (pI)

49.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Separin_C PF03568 47 - 81 6.7e-07 Separin, protease domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 234
AcoI YGGCCR 2 cut(s) 48, 223
AcuI CTGAAG 1 cut(s) 195
AfaI GTAC 1 cut(s) 218
AgsI TTSAA 2 cut(s) 86, 196
AhlI ACTAGT 1 cut(s) 58
AluBI AGCT 1 cut(s) 82
AluI AGCT 1 cut(s) 82
Alw21I GWGCWC 1 cut(s) 166
Alw26I GTCTC 1 cut(s) 270
Alw44I GTGCAC 1 cut(s) 162
AlwNI CAGNNNCTG 1 cut(s) 279
AoxI GGCC 2 cut(s) 48, 223
ApaLI GTGCAC 1 cut(s) 162
BaeGI GKGCMC 1 cut(s) 166
BalI TGGCCA 2 cut(s) 50, 225
Bbv12I GWGCWC 1 cut(s) 166
BcoDI GTCTC 1 cut(s) 270
BcuI ACTAGT 1 cut(s) 58
BfaI CTAG 2 cut(s) 59, 260
BmsI GCATC 2 cut(s) 14, 221
BpuEI CTTGAG 1 cut(s) 286
BsaAI YACGTR 1 cut(s) 11
BsaJI CCNNGG 1 cut(s) 226
Bse1I ACTGG 1 cut(s) 284
BseDI CCNNGG 1 cut(s) 226
BseGI GGATG 2 cut(s) 164, 236
BseMII CTCAG 1 cut(s) 33
BseNI ACTGG 1 cut(s) 284
BseSI GKGCMC 1 cut(s) 166
BsgI GTGCAG 1 cut(s) 164
BshFI GGCC 2 cut(s) 50, 225
BsiHKAI GWGCWC 1 cut(s) 166
BsmAI GTCTC 1 cut(s) 270
BsnI GGCC 2 cut(s) 50, 225
Bsp1286I GDGCHC 1 cut(s) 166
Bsp1407I TGTACA 1 cut(s) 216
Bsp143I GATC 1 cut(s) 205
Bsp19I CCATGG 1 cut(s) 226
BspACI CCGC 1 cut(s) 234
BspANI GGCC 2 cut(s) 50, 225
BspCNI CTCAG 1 cut(s) 34
BsrGI TGTACA 1 cut(s) 216
BsrI ACTGG 1 cut(s) 284
BssECI CCNNGG 1 cut(s) 226
BssMI GATC 1 cut(s) 205
BssT1I CCWWGG 1 cut(s) 226
Bst4CI ACNGT 1 cut(s) 289
BstAPI GCANNNNNTGC 1 cut(s) 170
BstAUI TGTACA 1 cut(s) 216
BstBAI YACGTR 1 cut(s) 11
BstC8I GCNNGC 1 cut(s) 236
BstDEI CTNAG 1 cut(s) 42
BstDSI CCRYGG 1 cut(s) 226
BstF5I GGATG 2 cut(s) 164, 236
BstKTI GATC 1 cut(s) 208
BstMAI GTCTC 1 cut(s) 270
BstMBI GATC 1 cut(s) 205
BstMWI GCNNNNNNNGC 3 cut(s) 161, 170, 231
BstSLI GKGCMC 1 cut(s) 166
BsuRI GGCC 2 cut(s) 50, 225
BtgI CCRYGG 1 cut(s) 226
BtsCI GGATG 2 cut(s) 164, 236
BtsI GCAGTG 1 cut(s) 78
BtsIMutI CAGTG 2 cut(s) 78, 285
Cac8I GCNNGC 1 cut(s) 236
CaiI CAGNNNCTG 1 cut(s) 279
Csp6I GTAC 1 cut(s) 217
CviAII CATG 2 cut(s) 203, 227
CviJI RGCY 6 cut(s) 50, 82, 115, 155, 201, 225
CviKI_1 RGCY 6 cut(s) 50, 82, 115, 155, 201, 225
CviQI GTAC 1 cut(s) 217
DdeI CTNAG 1 cut(s) 42
DpnI GATC 1 cut(s) 207
DpnII GATC 1 cut(s) 205
EaeI YGGCCR 2 cut(s) 48, 223
Eco130I CCWWGG 1 cut(s) 226
Eco57I CTGAAG 1 cut(s) 195
EcoT14I CCWWGG 1 cut(s) 226
ErhI CCWWGG 1 cut(s) 226
FaeI CATG 2 cut(s) 206, 230
FaiI YATR 6 cut(s) 110, 204, 215, 228, 247, 254
FatI CATG 2 cut(s) 202, 226
FauI CCCGC 1 cut(s) 227
FokI GGATG 2 cut(s) 171, 243
FspBI CTAG 2 cut(s) 59, 260
HaeIII GGCC 2 cut(s) 50, 225
Hin1II CATG 2 cut(s) 206, 230
HinfI GANTC 2 cut(s) 17, 270
Hpy166II GTNNAC 2 cut(s) 92, 164
Hpy188I TCNGA 2 cut(s) 43, 275
Hpy188III TCNNGA 2 cut(s) 131, 303
Hpy8I GTNNAC 2 cut(s) 92, 164
HpyAV CCTTC 2 cut(s) 80, 145
HpyCH4III ACNGT 1 cut(s) 289
HpyCH4IV ACGT 1 cut(s) 10
HpyCH4V TGCA 2 cut(s) 145, 164
HpyF10VI GCNNNNNNNGC 3 cut(s) 161, 170, 231
HpyF3I CTNAG 1 cut(s) 42
HpySE526I ACGT 1 cut(s) 10
Hsp92II CATG 2 cut(s) 206, 230
Kzo9I GATC 1 cut(s) 205
LpnPI CCDG 4 cut(s) 116, 131, 141, 265
LweI GCATC 2 cut(s) 14, 221
MaeI CTAG 2 cut(s) 59, 260
MaeII ACGT 1 cut(s) 10
MalI GATC 1 cut(s) 207
MboI GATC 1 cut(s) 205
MboII GAAGA 2 cut(s) 90, 188
MhlI GDGCHC 1 cut(s) 166
MlsI TGGCCA 2 cut(s) 50, 225
MluCI AATT 2 cut(s) 179, 242
MluNI TGGCCA 2 cut(s) 50, 225
MnlI CCTC 3 cut(s) 133, 177, 303
Mox20I TGGCCA 2 cut(s) 50, 225
MscI TGGCCA 2 cut(s) 50, 225
Msp20I TGGCCA 2 cut(s) 50, 225
MwoI GCNNNNNNNGC 3 cut(s) 161, 170, 231
NcoI CCATGG 1 cut(s) 226
NdeII GATC 1 cut(s) 205
NlaIII CATG 2 cut(s) 206, 230
PfeI GAWTC 2 cut(s) 17, 270
Ppu21I YACGTR 1 cut(s) 11
PstNI CAGNNNCTG 1 cut(s) 279
RsaI GTAC 1 cut(s) 218
RsaNI GTAC 1 cut(s) 217
Sau3AI GATC 1 cut(s) 205
SduI GDGCHC 1 cut(s) 166
SetI ASST 5 cut(s) 13, 84, 91, 144, 169
SfaNI GCATC 2 cut(s) 14, 221
SmlI CTYRAG 1 cut(s) 265
SmoI CTYRAG 1 cut(s) 265
SpeI ACTAGT 1 cut(s) 58
Sse9I AATT 2 cut(s) 179, 242
SsiI CCGC 1 cut(s) 234
SspI AATATT 1 cut(s) 123
SspMI CTAG 2 cut(s) 59, 260
StyI CCWWGG 1 cut(s) 226
TaaI ACNGT 1 cut(s) 289
TaiI ACGT 1 cut(s) 13
TasI AATT 2 cut(s) 179, 242
TatI WGTACW 1 cut(s) 216
TfiI GAWTC 2 cut(s) 17, 270
TscAI CASTG 2 cut(s) 78, 292
TspDTI ATGAA 1 cut(s) 30
TspRI CASTG 2 cut(s) 78, 292
VneI GTGCAC 1 cut(s) 162
XspI CTAG 2 cut(s) 59, 260
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.