RchiOBHm_Chr3g0475761

separase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0000800
Physical Location & Seq
Reverse (-)
21586328 .. 21588506
2179 bp
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UTR
Exon/CDS
Intron
PRQ44124

Sequence Viewer

Length: 156 bp
ATGAAAATTCAGAGCTGCGGTTTTTGCATTATCGTGTGGACGCTAGCTAAGTGTGCTTCGTTAATTCAAAGAAAGGAAGACGAGGTGTACGAGCGGCTGCTTTGTATGGTTGAGGAGTTGGGTCTTTGGTTTAGGTTCTTGGCCCAGAAATGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000278 GO:0000280 GO:0000281 GO:0000902 GO:0000910 GO:0000911 GO:0003006 GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005819 GO:0005856 GO:0005874 GO:0006508 GO:0006807 GO:0006810 GO:0006887 GO:0006996 GO:0007049 GO:0007059 GO:0007063 GO:0007275 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009826 GO:0009888 GO:0009960 GO:0009987 GO:0010154 GO:0010564 GO:0010638 GO:0015630 GO:0016043 GO:0016049 GO:0016192 GO:0016787 GO:0019538 GO:0022402 GO:0022414 GO:0032501 GO:0032502 GO:0032506 GO:0032878 GO:0032940 GO:0032989 GO:0033043 GO:0033044 GO:0033045 GO:0040007 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044238 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0045132 GO:0045787 GO:0045876 GO:0046903 GO:0048285 GO:0048316 GO:0048518 GO:0048522 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051128 GO:0051130 GO:0051179 GO:0051234 GO:0051301 GO:0051304 GO:0051307 GO:0051321 GO:0051726 GO:0051983 GO:0051984 GO:0060560 GO:0061458 GO:0061640 GO:0065007 GO:0070011 GO:0071704 GO:0071840 GO:0072686 GO:0090068 GO:0098813 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0140013 GO:0140096 GO:1901564 GO:1902410 GO:1903046 GO:1903047 GO:2000114 GO:2001252
KEGG Pathways
Metabolic & Signaling
ko04110 ko04111 ko04113 ko04114 map04110 map04111 map04113 map04114
Pfam Domains
Protein Families
Peptidase_C50

Protein Analysis

51

Amino Acids

6.04

Weight (kDa)

7.59

Isoelectric Point (pI)

36.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_ESP1 PF25110 11 - 50 5.1e-10 Separase-like, TPR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 94
AciI CCGC 2 cut(s) 18, 94
AcsI RAATTY 1 cut(s) 6
AfaI GTAC 1 cut(s) 89
AgsI TTSAA 1 cut(s) 68
AluBI AGCT 2 cut(s) 15, 47
AluI AGCT 2 cut(s) 15, 47
AoxI GGCC 1 cut(s) 141
ApeKI GCWGC 2 cut(s) 15, 97
ApoI RAATTY 1 cut(s) 6
AspS9I GGNCC 1 cut(s) 142
AsuNHI GCTAGC 1 cut(s) 43
BbsI GAAGAC 1 cut(s) 84
BbvI GCAGC 2 cut(s) 2, 84
BfaI CTAG 1 cut(s) 44
BisI GCNGC 3 cut(s) 16, 95, 98
BlsI GCNGC 3 cut(s) 17, 96, 99
BmgT120I GGNCC 1 cut(s) 142
BmtI GCTAGC 1 cut(s) 47
BpiI GAAGAC 1 cut(s) 84
BseRI GAGGAG 1 cut(s) 128
BseXI GCAGC 2 cut(s) 2, 84
BshFI GGCC 1 cut(s) 143
BsnI GGCC 1 cut(s) 143
BspACI CCGC 2 cut(s) 18, 94
BspANI GGCC 1 cut(s) 143
BspOI GCTAGC 1 cut(s) 47
BsrBI CCGCTC 1 cut(s) 94
BstC8I GCNNGC 1 cut(s) 45
BstDEI CTNAG 1 cut(s) 48
BstMWI GCNNNNNNNGC 2 cut(s) 24, 53
BstV1I GCAGC 2 cut(s) 2, 84
BstV2I GAAGAC 1 cut(s) 84
BsuRI GGCC 1 cut(s) 143
Cac8I GCNNGC 1 cut(s) 45
Cfr13I GGNCC 1 cut(s) 142
CseI GACGC 1 cut(s) 49
Csp6I GTAC 1 cut(s) 88
CviJI RGCY 4 cut(s) 15, 47, 97, 143
CviKI_1 RGCY 4 cut(s) 15, 47, 97, 143
CviQI GTAC 1 cut(s) 88
DdeI CTNAG 1 cut(s) 48
FaiI YATR 1 cut(s) 107
Fnu4HI GCNGC 3 cut(s) 16, 95, 98
Fsp4HI GCNGC 3 cut(s) 16, 95, 98
FspBI CTAG 1 cut(s) 44
GluI GCNGC 3 cut(s) 16, 95, 98
HaeIII GGCC 1 cut(s) 143
HgaI GACGC 1 cut(s) 49
Hpy166II GTNNAC 2 cut(s) 39, 88
Hpy188I TCNGA 1 cut(s) 12
Hpy8I GTNNAC 2 cut(s) 39, 88
HpyCH4V TGCA 1 cut(s) 27
HpyF10VI GCNNNNNNNGC 2 cut(s) 24, 53
HpyF3I CTNAG 1 cut(s) 48
Lsp1109I GCAGC 2 cut(s) 2, 84
MaeI CTAG 1 cut(s) 44
MbiI CCGCTC 1 cut(s) 94
MboII GAAGA 1 cut(s) 89
MluCI AATT 2 cut(s) 6, 63
MnlI CCTC 2 cut(s) 76, 106
MseI TTAA 1 cut(s) 62
MslI CAYNNNNRTG 1 cut(s) 32
MwoI GCNNNNNNNGC 2 cut(s) 24, 53
NheI GCTAGC 1 cut(s) 43
PcsI WCGNNNNNNNCGW 1 cut(s) 87
PkrI GCNGC 3 cut(s) 17, 96, 99
PspPI GGNCC 1 cut(s) 142
RsaI GTAC 1 cut(s) 89
RsaNI GTAC 1 cut(s) 88
RseI CAYNNNNRTG 1 cut(s) 32
SaqAI TTAA 1 cut(s) 62
SatI GCNGC 3 cut(s) 16, 95, 98
Sau96I GGNCC 1 cut(s) 142
SetI ASST 4 cut(s) 17, 49, 87, 137
SgeI CNNG 5 cut(s) 46, 56, 94, 103, 151
SmiMI CAYNNNNRTG 1 cut(s) 32
Sse9I AATT 2 cut(s) 6, 63
SsiI CCGC 2 cut(s) 18, 94
SspMI CTAG 1 cut(s) 44
TasI AATT 2 cut(s) 6, 63
TauI GCSGC 1 cut(s) 97
Tru1I TTAA 1 cut(s) 62
Tru9I TTAA 1 cut(s) 62
TseI GCWGC 2 cut(s) 15, 97
TspDTI ATGAA 1 cut(s) 17
XapI RAATTY 1 cut(s) 6
XspI CTAG 1 cut(s) 44
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.