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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AcsI | RAATTY | 1 cut(s) | 179 |
| AfaI | GTAC | 1 cut(s) | 133 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 20, 52 |
| AluBI | AGCT | 2 cut(s) | 78, 155 |
| AluI | AGCT | 2 cut(s) | 78, 155 |
| ApoI | RAATTY | 1 cut(s) | 179 |
| BaeGI | GKGCMC | 1 cut(s) | 109 |
| BmiI | GGNNCC | 1 cut(s) | 56 |
| BpmI | CTGGAG | 1 cut(s) | 64 |
| BsaJI | CCNNGG | 1 cut(s) | 48 |
| Bse1I | ACTGG | 1 cut(s) | 165 |
| BseDI | CCNNGG | 1 cut(s) | 48 |
| BseGI | GGATG | 2 cut(s) | 71, 125 |
| BseNI | ACTGG | 1 cut(s) | 165 |
| BseSI | GKGCMC | 1 cut(s) | 109 |
| BsgI | GTGCAG | 1 cut(s) | 189 |
| Bsp1286I | GDGCHC | 1 cut(s) | 109 |
| Bsp1407I | TGTACA | 1 cut(s) | 131 |
| Bsp143I | GATC | 1 cut(s) | 185 |
| Bsp19I | CCATGG | 1 cut(s) | 48 |
| BspLI | GGNNCC | 1 cut(s) | 56 |
| BsrGI | TGTACA | 1 cut(s) | 131 |
| BsrI | ACTGG | 1 cut(s) | 165 |
| BssECI | CCNNGG | 1 cut(s) | 48 |
| BssMI | GATC | 1 cut(s) | 185 |
| BssT1I | CCWWGG | 1 cut(s) | 48 |
| Bst4CI | ACNGT | 2 cut(s) | 45, 62 |
| BstAUI | TGTACA | 1 cut(s) | 131 |
| BstDSI | CCRYGG | 1 cut(s) | 48 |
| BstF5I | GGATG | 2 cut(s) | 71, 125 |
| BstKTI | GATC | 1 cut(s) | 188 |
| BstMBI | GATC | 1 cut(s) | 185 |
| BstSLI | GKGCMC | 1 cut(s) | 109 |
| BtgI | CCRYGG | 1 cut(s) | 48 |
| BtsCI | GGATG | 2 cut(s) | 71, 125 |
| BtsIMutI | CAGTG | 2 cut(s) | 58, 158 |
| Csp6I | GTAC | 1 cut(s) | 132 |
| CviAII | CATG | 2 cut(s) | 49, 192 |
| CviJI | RGCY | 2 cut(s) | 78, 155 |
| CviKI_1 | RGCY | 2 cut(s) | 78, 155 |
| CviQI | GTAC | 1 cut(s) | 132 |
| DpnI | GATC | 1 cut(s) | 187 |
| DpnII | GATC | 1 cut(s) | 185 |
| Eco130I | CCWWGG | 1 cut(s) | 48 |
| EcoT14I | CCWWGG | 1 cut(s) | 48 |
| ErhI | CCWWGG | 1 cut(s) | 48 |
| FaeI | CATG | 2 cut(s) | 52, 195 |
| FaiI | YATR | 2 cut(s) | 50, 193 |
| FatI | CATG | 2 cut(s) | 48, 191 |
| FokI | GGATG | 2 cut(s) | 78, 112 |
| GsuI | CTGGAG | 1 cut(s) | 64 |
| Hin1II | CATG | 2 cut(s) | 52, 195 |
| HindIII | AAGCTT | 1 cut(s) | 153 |
| HinfI | GANTC | 1 cut(s) | 3 |
| Hpy166II | GTNNAC | 1 cut(s) | 123 |
| Hpy188I | TCNGA | 1 cut(s) | 8 |
| Hpy188III | TCNNGA | 2 cut(s) | 25, 81 |
| Hpy8I | GTNNAC | 1 cut(s) | 123 |
| HpyCH4III | ACNGT | 2 cut(s) | 45, 62 |
| HpyCH4V | TGCA | 2 cut(s) | 170, 195 |
| Hsp92II | CATG | 2 cut(s) | 52, 195 |
| Kzo9I | GATC | 1 cut(s) | 185 |
| LmnI | GCTCC | 1 cut(s) | 83 |
| LpnPI | CCDG | 4 cut(s) | 10, 94, 142, 146 |
| MalI | GATC | 1 cut(s) | 187 |
| MboI | GATC | 1 cut(s) | 185 |
| MboII | GAAGA | 1 cut(s) | 188 |
| MhlI | GDGCHC | 1 cut(s) | 109 |
| MluCI | AATT | 1 cut(s) | 179 |
| MnlI | CCTC | 2 cut(s) | 94, 166 |
| NcoI | CCATGG | 1 cut(s) | 48 |
| NdeII | GATC | 1 cut(s) | 185 |
| NlaIII | CATG | 2 cut(s) | 52, 195 |
| NlaIV | GGNNCC | 1 cut(s) | 56 |
| PfeI | GAWTC | 1 cut(s) | 3 |
| PspN4I | GGNNCC | 1 cut(s) | 56 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 115, 147 |
| RsaI | GTAC | 1 cut(s) | 133 |
| RsaNI | GTAC | 1 cut(s) | 132 |
| Sau3AI | GATC | 1 cut(s) | 185 |
| SduI | GDGCHC | 1 cut(s) | 109 |
| SetI | ASST | 3 cut(s) | 80, 157, 200 |
| SgeI | CNNG | 6 cut(s) | 37, 61, 93, 141, 147, 173 |
| Sse9I | AATT | 1 cut(s) | 179 |
| StyI | CCWWGG | 1 cut(s) | 48 |
| TaaI | ACNGT | 2 cut(s) | 45, 62 |
| TasI | AATT | 1 cut(s) | 179 |
| TatI | WGTACW | 1 cut(s) | 131 |
| TfiI | GAWTC | 1 cut(s) | 3 |
| TscAI | CASTG | 2 cut(s) | 65, 165 |
| TspRI | CASTG | 2 cut(s) | 65, 165 |
| XapI | RAATTY | 1 cut(s) | 179 |