Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0000800

Physical Location & Seq

Genomic Coordinates Forward (+)

19724049 .. 19724246

Gene Structure 198 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g19750.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 198 bp

ATGGAATGTAAACGTTACAAGGATGTGAATGTCGACGATGATGCTCAAACTTTATACAGTTTGTTATTGTCTTGTAAGAAATTCCCAAAGAAGATACGCGAAATTGTTTTGGAACAGGTTAGAACATTTTATATCTCTTTTCTGTTGGAGTTCATTAAATATTTATCCTTTTTCTATTTAAAAAGGGAAGGGCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000278 GO:0000280 GO:0000281 GO:0000902 GO:0000910 GO:0000911 GO:0003006 GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005819 GO:0005856 GO:0005874 GO:0006508 GO:0006807 GO:0006810 GO:0006887 GO:0006996 GO:0007049 GO:0007059 GO:0007063 GO:0007275 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009826 GO:0009888 GO:0009960 GO:0009987 GO:0010154 GO:0010564 GO:0010638 GO:0015630 GO:0016043 GO:0016049 GO:0016192 GO:0016787 GO:0019538 GO:0022402 GO:0022414 GO:0032501 GO:0032502 GO:0032506 GO:0032878 GO:0032940 GO:0032989 GO:0033043 GO:0033044 GO:0033045 GO:0040007 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044238 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0045132 GO:0045787 GO:0045876 GO:0046903 GO:0048285 GO:0048316 GO:0048518 GO:0048522 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051128 GO:0051130 GO:0051179 GO:0051234 GO:0051301 GO:0051304 GO:0051307 GO:0051321 GO:0051726 GO:0051983 GO:0051984 GO:0060560 GO:0061458 GO:0061640 GO:0065007 GO:0070011 GO:0071704 GO:0071840 GO:0072686 GO:0090068 GO:0098813 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0140013 GO:0140096 GO:1901564 GO:1902410 GO:1903046 GO:1903047 GO:2000114 GO:2001252

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 ko04114 map04110 map04111 map04113 map04114

Pfam Domains

Protein Families

Peptidase_C50

Protein Analysis

66

Amino Acids

7.96

Weight (kDa)

8.95

Isoelectric Point (pI)

42.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000800)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G22970 AT4G22970 AT4G22970 AT4G24300 AT5G28550
fragaria_vesca	FvH4_3g35420 FvH4_3g35420 FvH4_3g35420 FvH4_3g35420 FvH4_3g35420 FvH4_3g35420 FvH4_3g35420 FvH4_5g29930 FvH4_5g29931 FvH4_5g29932
malus_domestica	MD00G1111100.v1.1 MD00G1111200.v1.1 MD00G1166400.v1.1 MD08G1225400.v1.1 MD08G1225900.v1.1 MD08G1226100.v1.1 MD08G1226600.v1.1 MD08G1226700.v1.1 MD15G1418900.v1.1 MD15G1419000.v1.1
prunus_persica	Prupe.1G563000_v2.0.a1 Prupe.1G563000_v2.0.a1 Prupe.1G563000_v2.0.a1
pyrus_communis	pycom08g19740 pycom08g19750 pycom08g19770 pycom15g37190
rosa_chinensis	RchiOBHm_Chr3g0475761 RchiOBHm_Chr7g0177921 RchiOBHm_Chr7g0222331 RchiOBHm_Chr7g0223761
rosa_laevigata	RLG00000001950 RLG00000002070 RLG00000005491
rosa_multiflora	Rmu_co8041848.1_g000001 Rmu_co8312143.1_g000001 Rmu_sc0004923.1_g000010 Rmu_sc0007069.1_g000004 Rmu_sc0017679.1_g000002 Rmu_sc0028725.1_g000001
rosa_roxburghii	Rroxscaffold_3G00235380 Rroxscaffold_3G00235390 Rroxscaffold_3G00237070 Rroxscaffold_3G00275430 Rroxscaffold_5G00332730
rosa_rugosa	Rorug06G0411000 Rorug07G0207600 Rorug07G0219600
rosa_samantha	Rh7AG350000 Rh7AG362500 Rh7BG010300 Rh7BG339600 Rh7BG353700 Rh7CG010500 Rh7CG367500 Rh7CG381100 Rh7CG381200 Rh7CG398700 Rh7DG010300 Rh7DG346400 Rh7DG357600
rosa_wichuraiana	Rw7G000860 Rw7G029540 Rw7G030790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	33
AccII	CGCG	1 cut(s)	99
AclI	AACGTT	1 cut(s)	13
AcsI	RAATTY	1 cut(s)	80
ApoI	RAATTY	1 cut(s)	80
BcgI	CGANNNNNNTGC	2 cut(s)	23, 57
BmsI	GCATC	1 cut(s)	31
BseGI	GGATG	1 cut(s)	28
Bsh1236I	CGCG	1 cut(s)	99
BspFNI	CGCG	1 cut(s)	99
Bst4CI	ACNGT	1 cut(s)	59
BstF5I	GGATG	1 cut(s)	28
BstFNI	CGCG	1 cut(s)	99
BstUI	CGCG	1 cut(s)	99
BtsCI	GGATG	1 cut(s)	28
DraI	TTTAAA	1 cut(s)	180
FaiI	YATR	2 cut(s)	55, 132
FblI	GTMKAC	1 cut(s)	33
FokI	GGATG	1 cut(s)	35
HincII	GTYRAC	1 cut(s)	34
HindII	GTYRAC	1 cut(s)	34
Hpy166II	GTNNAC	2 cut(s)	11, 34
Hpy8I	GTNNAC	2 cut(s)	11, 34
Hpy99I	CGWCG	1 cut(s)	38
HpyAV	CCTTC	1 cut(s)	182
HpyCH4III	ACNGT	1 cut(s)	59
HpyCH4IV	ACGT	1 cut(s)	13
HpySE526I	ACGT	1 cut(s)	13
LpnPI	CCDG	1 cut(s)	101
LweI	GCATC	1 cut(s)	31
MaeII	ACGT	1 cut(s)	13
MaeIII	GTNAC	1 cut(s)	14
MboII	GAAGA	1 cut(s)	103
MluCI	AATT	2 cut(s)	80, 102
MmeI	TCCRAC	1 cut(s)	126
MseI	TTAA	3 cut(s)	156, 179, 196
MvnI	CGCG	1 cut(s)	99
Psp1406I	AACGTT	1 cut(s)	13
SalI	GTCGAC	1 cut(s)	32
SaqAI	TTAA	3 cut(s)	156, 179, 196
SetI	ASST	2 cut(s)	16, 120
SfaNI	GCATC	1 cut(s)	31
SgeI	CNNG	4 cut(s)	31, 84, 110, 128
Sse9I	AATT	2 cut(s)	80, 102
SspI	AATATT	1 cut(s)	161
TaaI	ACNGT	1 cut(s)	59
TaiI	ACGT	1 cut(s)	16
TaqI	TCGA	1 cut(s)	33
TasI	AATT	2 cut(s)	80, 102
Tru1I	TTAA	3 cut(s)	156, 179, 196
Tru9I	TTAA	3 cut(s)	156, 179, 196
TspDTI	ATGAA	1 cut(s)	142
XapI	RAATTY	1 cut(s)	80
XmiI	GTMKAC	1 cut(s)	33

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.