Rh7CG398700

separase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
Physical Location & Seq
Forward (+)
50929394 .. 50940867
11474 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG398700.1

Sequence Viewer

Length: 360 bp
ATGGCATCACGTAATGAATCTAATGGTGGCGAGAACTTGTCTGAGTTGGCCAACAAACTAGTATTAGAAGCAATGAATGAGCTTGAAGGTTTACATTCTTCTGTAAATATAGAGCCAACAATATTAGTTCTGGACTACGAGGTGCAGGGGAAGGCTGGATGTGCACCTCCTGCTGAAGAATTGGCAGTAGCGTTGAAAAGCCATGATCTATTTATGTACATTGGCCATGGATGTGGATTCGACTGGTTGATAAAAAATTTCGACTGGTCAAAAAAGCCATTGTGTTCATCCGCCTCAAATTTAGGAAGAAAAGAAACTCACAGCATCGAGCATCGTGCATCGTGTGGGCTTCGTGACTAG
Functional Annotation
Pfam Domains
Protein Families

Protein Analysis

119

Amino Acids

13.01

Weight (kDa)

5.3

Isoelectric Point (pI)

45.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Separin_C PF03568 45 - 82 4e-06 Separin, protease domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 291
AcoI YGGCCR 2 cut(s) 48, 223
AcsI RAATTY 2 cut(s) 256, 298
AcuI CTGAAG 1 cut(s) 195
AfaI GTAC 1 cut(s) 218
AgsI TTSAA 2 cut(s) 86, 196
AhlI ACTAGT 1 cut(s) 58
AluBI AGCT 1 cut(s) 82
AluI AGCT 1 cut(s) 82
Alw21I GWGCWC 1 cut(s) 166
Alw44I GTGCAC 1 cut(s) 162
AoxI GGCC 2 cut(s) 48, 223
ApaLI GTGCAC 1 cut(s) 162
ApoI RAATTY 2 cut(s) 256, 298
BaeGI GKGCMC 1 cut(s) 166
BalI TGGCCA 2 cut(s) 50, 225
Bbv12I GWGCWC 1 cut(s) 166
BcgI CGANNNNNNTGC 2 cut(s) 317, 351
BcuI ACTAGT 1 cut(s) 58
BfaI CTAG 2 cut(s) 59, 358
BmsI GCATC 4 cut(s) 14, 333, 340, 347
BsaAI YACGTR 1 cut(s) 11
BsaJI CCNNGG 1 cut(s) 226
Bse1I ACTGG 2 cut(s) 248, 269
Bse3DI GCAATG 1 cut(s) 78
BseDI CCNNGG 1 cut(s) 226
BseGI GGATG 3 cut(s) 164, 236, 287
BseMI GCAATG 1 cut(s) 78
BseMII CTCAG 1 cut(s) 33
BseNI ACTGG 2 cut(s) 248, 269
BseSI GKGCMC 1 cut(s) 166
BsgI GTGCAG 1 cut(s) 164
BshFI GGCC 2 cut(s) 50, 225
BsiHKAI GWGCWC 1 cut(s) 166
BsnI GGCC 2 cut(s) 50, 225
Bsp1286I GDGCHC 1 cut(s) 166
Bsp1407I TGTACA 1 cut(s) 216
Bsp143I GATC 1 cut(s) 205
Bsp19I CCATGG 1 cut(s) 226
BspACI CCGC 1 cut(s) 291
BspANI GGCC 2 cut(s) 50, 225
BspCNI CTCAG 1 cut(s) 34
BsrDI GCAATG 1 cut(s) 78
BsrGI TGTACA 1 cut(s) 216
BsrI ACTGG 2 cut(s) 248, 269
BssECI CCNNGG 1 cut(s) 226
BssMI GATC 1 cut(s) 205
BssT1I CCWWGG 1 cut(s) 226
BstAPI GCANNNNNTGC 1 cut(s) 170
BstAUI TGTACA 1 cut(s) 216
BstBAI YACGTR 1 cut(s) 11
BstDEI CTNAG 1 cut(s) 42
BstDSI CCRYGG 1 cut(s) 226
BstF5I GGATG 3 cut(s) 164, 236, 287
BstKTI GATC 1 cut(s) 208
BstMBI GATC 1 cut(s) 205
BstMWI GCNNNNNNNGC 2 cut(s) 161, 170
BstSLI GKGCMC 1 cut(s) 166
BstXI CCANNNNNNTGG 1 cut(s) 233
BsuRI GGCC 2 cut(s) 50, 225
BtgI CCRYGG 1 cut(s) 226
BtsCI GGATG 3 cut(s) 164, 236, 287
Csp6I GTAC 1 cut(s) 217
CviAII CATG 2 cut(s) 203, 227
CviJI RGCY 8 cut(s) 50, 82, 115, 155, 201, 225, 277, 349
CviKI_1 RGCY 8 cut(s) 50, 82, 115, 155, 201, 225, 277, 349
CviQI GTAC 1 cut(s) 217
DdeI CTNAG 1 cut(s) 42
DpnI GATC 1 cut(s) 207
DpnII GATC 1 cut(s) 205
EaeI YGGCCR 2 cut(s) 48, 223
EciI GGCGGA 1 cut(s) 280
Eco130I CCWWGG 1 cut(s) 226
Eco57I CTGAAG 1 cut(s) 195
EcoT14I CCWWGG 1 cut(s) 226
ErhI CCWWGG 1 cut(s) 226
FaeI CATG 2 cut(s) 206, 230
FaiI YATR 4 cut(s) 110, 204, 215, 228
FatI CATG 2 cut(s) 202, 226
FokI GGATG 3 cut(s) 171, 243, 274
FspBI CTAG 2 cut(s) 59, 358
HaeIII GGCC 2 cut(s) 50, 225
Hin1II CATG 2 cut(s) 206, 230
HinfI GANTC 2 cut(s) 17, 237
Hpy166II GTNNAC 2 cut(s) 92, 164
Hpy188I TCNGA 1 cut(s) 43
Hpy188III TCNNGA 2 cut(s) 131, 353
Hpy8I GTNNAC 2 cut(s) 92, 164
HpyAV CCTTC 2 cut(s) 80, 145
HpyCH4IV ACGT 1 cut(s) 10
HpyCH4V TGCA 3 cut(s) 145, 164, 338
HpyF10VI GCNNNNNNNGC 2 cut(s) 161, 170
HpyF3I CTNAG 1 cut(s) 42
HpySE526I ACGT 1 cut(s) 10
Hsp92II CATG 2 cut(s) 206, 230
Kzo9I GATC 1 cut(s) 205
LpnPI CCDG 6 cut(s) 116, 131, 141, 183, 229, 250
LweI GCATC 4 cut(s) 14, 333, 340, 347
MaeI CTAG 2 cut(s) 59, 358
MaeII ACGT 1 cut(s) 10
MaeIII GTNAC 1 cut(s) 353
MalI GATC 1 cut(s) 207
MboI GATC 1 cut(s) 205
MboII GAAGA 3 cut(s) 90, 188, 318
MhlI GDGCHC 1 cut(s) 166
MlsI TGGCCA 2 cut(s) 50, 225
MluCI AATT 3 cut(s) 179, 256, 298
MluNI TGGCCA 2 cut(s) 50, 225
MnlI CCTC 3 cut(s) 133, 177, 304
Mox20I TGGCCA 2 cut(s) 50, 225
MscI TGGCCA 2 cut(s) 50, 225
MslI CAYNNNNRTG 1 cut(s) 231
Msp20I TGGCCA 2 cut(s) 50, 225
MwoI GCNNNNNNNGC 2 cut(s) 161, 170
NcoI CCATGG 1 cut(s) 226
NdeII GATC 1 cut(s) 205
NlaIII CATG 2 cut(s) 206, 230
NmuCI GTSAC 1 cut(s) 353
PfeI GAWTC 2 cut(s) 17, 237
Ppu21I YACGTR 1 cut(s) 11
RsaI GTAC 1 cut(s) 218
RsaNI GTAC 1 cut(s) 217
RseI CAYNNNNRTG 1 cut(s) 231
Sau3AI GATC 1 cut(s) 205
SduI GDGCHC 1 cut(s) 166
SetI ASST 5 cut(s) 13, 84, 91, 144, 169
SfaNI GCATC 4 cut(s) 14, 333, 340, 347
SmiMI CAYNNNNRTG 1 cut(s) 231
SpeI ACTAGT 1 cut(s) 58
Sse9I AATT 3 cut(s) 179, 256, 298
SsiI CCGC 1 cut(s) 291
SspI AATATT 1 cut(s) 123
SspMI CTAG 2 cut(s) 59, 358
StyI CCWWGG 1 cut(s) 226
TaiI ACGT 1 cut(s) 13
TaqI TCGA 3 cut(s) 240, 261, 327
TasI AATT 3 cut(s) 179, 256, 298
TatI WGTACW 1 cut(s) 216
TfiI GAWTC 2 cut(s) 17, 237
TseFI GTSAC 1 cut(s) 353
Tsp45I GTSAC 1 cut(s) 353
TspDTI ATGAA 3 cut(s) 30, 89, 276
VneI GTGCAC 1 cut(s) 162
XapI RAATTY 2 cut(s) 256, 298
XspI CTAG 2 cut(s) 59, 358
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.