AT4G39870

Oxidation resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0001099
Physical Location & Seq
Forward (+)
18501877 .. 18504487
2611 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G39870.2

Sequence Viewer

Length: 1185 bp
ATGGGGAAACACAAATCTTTCAGAAGCAAAGCAGTGCACTTTGTCACCGATCTCACCGCTGGTCTTCTTAATCCCATCTCTGATAAACCCTCCTCCGCTCATCCTCCTCCTCCTCTTCCGGATGAGGAAGATGAGTCTAAGAGAAATCAGCTAGAGTCTACAACTGCAGAGCAGCCTAAGGATTTGGTTGACGAACCAGACACTTCTTCTTTCTCTGCATTCCTTGGTTCACTGTTATCTTCAGATCCCAAAGACAAAAGGAAGGATCAGGATCCAGAGGACGAAGAAGACGAGGAAGAAGACGAAGAAGAAGATTCTGAGGCAGAAACAAGCGATACATCATCATCATCTGCCAATCCTACTAGAACTATGAAGGAGACTACTAGTGGTGGTGCTGCAAAGAAGAGTTTTTTGTCCAAGTACAAACAGCATTTTAGGAATTTTTACCAGGCTGTTAAGTTTCCCGGGGTCAAGGAGCGAAAGGGAAATTCTGATGTGATACCAGATGATGAGGAGACTGAATATTATGATGGCTTAGAGATGAAGCCGATGCAGAATAATAATGTCAAAGAGGAAGTGACAGTAGTAGTGCAAGCAATTATACCTGAAATTTCAGAACCCTCTTTGCTTTTATCGGAGCAGTCTAGACGCTCCCTTTATACTTCACTTCCTGCGCTTGTTCAAGGGAGGAAATGGATATTGCTTTATAGTACATGGAGGCATGGTATATCACTATCCACGCTATACAGGAAAAGCCTTCTCTGGCCAGGTCTTAGCCTACTGGTTGTTGGAGACAGAAAAGGTTCGGTTTTTGGTGGTCTTGTTGAGGCACCTTTGATACCAACTGATAAAAAGTATCAGGGAACCAACAGTACCTTTGTTTTCACAAATAAATCAGGACAACCCACAATATACCGTCCCACAGGCGCAAATCGGTTCTACACTTTATGCTCCAAGGAATTCCTAGCTCTGGGCGGTGGTGGACGGTTTGCTCTCTATCTAGACAGTGAGCTGCTAAGCGGATCGAGCGCTTACTCAGAGACGTATGGGAACTCTTGTCTCGCAGACTCTCAGGACTTTGATGTTAAGGAAGTGGAGCTATGGGGATTTGTGTATGGCTCAAAGTATGATGAGATTCTAGCTCACAGCAAAACAATGGAGCCTGGTCTTTGCAGATGGTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TLD

Protein Analysis

394

Amino Acids

43.87

Weight (kDa)

4.91

Isoelectric Point (pI)

47.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TLD PF07534 205 - 370 7.1e-39 TLDc domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 829
AccBSI CCGCTC 1 cut(s) 98
AccI GTMKAC 1 cut(s) 158
AccIII TCCGGA 1 cut(s) 118
AciI CCGC 4 cut(s) 57, 96, 975, 1020
AclWI GGATC 5 cut(s) 239, 266, 273, 279, 1030
AcoI YGGCCR 1 cut(s) 764
AcsI RAATTY 4 cut(s) 439, 487, 609, 959
AcuI CTGAAG 1 cut(s) 225
AfaI GTAC 3 cut(s) 422, 712, 874
AfeI AGCGCT 1 cut(s) 1030
AfiI CCNNNNNNNGG 1 cut(s) 970
AgsI TTSAA 1 cut(s) 683
AhlI ACTAGT 1 cut(s) 383
AjnI CCWGG 3 cut(s) 447, 766, 1162
AluBI AGCT 5 cut(s) 151, 968, 1012, 1099, 1142
AluI AGCT 5 cut(s) 151, 968, 1012, 1099, 1142
Alw21I GWGCWC 1 cut(s) 39
Alw26I GTCTC 5 cut(s) 371, 509, 786, 1034, 1064
Alw44I GTGCAC 1 cut(s) 35
AlwI GGATC 5 cut(s) 239, 266, 273, 279, 1030
Ama87I CYCGRG 1 cut(s) 464
Aor13HI TCCGGA 1 cut(s) 118
Aor51HI AGCGCT 1 cut(s) 1030
AoxI GGCC 1 cut(s) 764
ApaLI GTGCAC 1 cut(s) 35
ApeKI GCWGC 3 cut(s) 172, 395, 1012
ApoI RAATTY 4 cut(s) 439, 487, 609, 959
Asp700I GAANNNNTTC 1 cut(s) 802
AspLEI GCGC 3 cut(s) 676, 929, 1031
AsuC2I CCSGG 2 cut(s) 465, 466
AsuHPI GGTGA 2 cut(s) 37, 46
AvaI CYCGRG 1 cut(s) 464
AxyI CCTNAGG 1 cut(s) 177
BaeGI GKGCMC 1 cut(s) 39
BalI TGGCCA 1 cut(s) 766
BamHI GGATCC 1 cut(s) 271
BanI GGYRCC 1 cut(s) 829
BbsI GAAGAC 3 cut(s) 56, 294, 306
Bbv12I GWGCWC 1 cut(s) 39
BbvI GCAGC 3 cut(s) 184, 382, 999
BccI CCATC 3 cut(s) 83, 524, 1170
BciT130I CCWGG 3 cut(s) 449, 768, 1164
BcnI CCSGG 2 cut(s) 465, 466
BcoDI GTCTC 5 cut(s) 371, 509, 786, 1034, 1064
BcuI ACTAGT 1 cut(s) 383
BfaI CTAG 7 cut(s) 152, 363, 384, 645, 965, 1001, 1139
BfmI CTRYAG 1 cut(s) 165
BfoI RGCGCY 1 cut(s) 1032
BisI GCNGC 3 cut(s) 173, 396, 1013
BlpI GCTNAGC 1 cut(s) 1016
BlsI GCNGC 3 cut(s) 174, 397, 1014
Bme1390I CCNGG 5 cut(s) 449, 465, 466, 768, 1164
BmeT110I CYCGRG 1 cut(s) 464
BmiI GGNNCC 4 cut(s) 273, 831, 865, 1161
BmrFI CCNGG 5 cut(s) 449, 465, 466, 768, 1164
BmsI GCATC 1 cut(s) 540
BpiI GAAGAC 3 cut(s) 56, 294, 306
Bpu1102I GCTNAGC 1 cut(s) 1016
BpuMI CCSGG 2 cut(s) 465, 466
BsaBI GATNNNNATC 1 cut(s) 270
BsaJI CCNNGG 4 cut(s) 223, 464, 465, 954
BsaWI WCCGGW 1 cut(s) 118
BsaXI ACNNNNNCTCC 2 cut(s) 709, 739
Bsc4I CCNNNNNNNGG 1 cut(s) 970
Bse1I ACTGG 1 cut(s) 786
Bse21I CCTNAGG 1 cut(s) 177
Bse8I GATNNNNATC 1 cut(s) 270
BseAI TCCGGA 1 cut(s) 118
BseBI CCWGG 3 cut(s) 449, 768, 1164
BseDI CCNNGG 4 cut(s) 223, 464, 465, 954
BseGI GGATG 2 cut(s) 100, 127
BseJI GATNNNNATC 1 cut(s) 270
BseLI CCNNNNNNNGG 1 cut(s) 970
BseMII CTCAG 3 cut(s) 309, 1050, 1085
BseNI ACTGG 1 cut(s) 786
BseRI GAGGAG 5 cut(s) 82, 96, 99, 102, 527
BseSI GKGCMC 1 cut(s) 39
BseXI GCAGC 3 cut(s) 184, 382, 999
BshFI GGCC 1 cut(s) 766
BshNI GGYRCC 1 cut(s) 829
BsiHKAI GWGCWC 1 cut(s) 39
BsiHKCI CYCGRG 1 cut(s) 464
BsiSI CCGG 2 cut(s) 119, 465
BslFI GGGAC 1 cut(s) 903
BslI CCNNNNNNNGG 1 cut(s) 970
BsmAI GTCTC 5 cut(s) 371, 509, 786, 1034, 1064
BsmBI CGTCTC 1 cut(s) 1034
BsmFI GGGAC 1 cut(s) 903
BsmI GAATGC 1 cut(s) 218
BsnI GGCC 1 cut(s) 766
BsoBI CYCGRG 1 cut(s) 464
Bsp1286I GDGCHC 1 cut(s) 39
Bsp13I TCCGGA 1 cut(s) 118
Bsp143I GATC 5 cut(s) 49, 244, 265, 271, 1022
Bsp1720I GCTNAGC 1 cut(s) 1016
BspACI CCGC 4 cut(s) 57, 96, 975, 1020
BspANI GGCC 1 cut(s) 766
BspCNI CTCAG 3 cut(s) 310, 1049, 1084
BspEI TCCGGA 1 cut(s) 118
BspHI TCATGA 1 cut(s) 1181
BspLI GGNNCC 4 cut(s) 273, 831, 865, 1161
BspMAI CTGCAG 1 cut(s) 169
BspPI GGATC 5 cut(s) 239, 266, 273, 279, 1030
BspT107I GGYRCC 1 cut(s) 829
BsrBI CCGCTC 1 cut(s) 98
BsrI ACTGG 1 cut(s) 786
BssECI CCNNGG 4 cut(s) 223, 464, 465, 954
BssMI GATC 5 cut(s) 49, 244, 265, 271, 1022
BssT1I CCWWGG 2 cut(s) 223, 954
Bst2UI CCWGG 3 cut(s) 449, 768, 1164
Bst4CI ACNGT 6 cut(s) 234, 583, 872, 917, 987, 1007
Bst6I CTCTTC 2 cut(s) 120, 398
BstC8I GCNNGC 1 cut(s) 594
BstDEI CTNAG 8 cut(s) 138, 177, 318, 535, 773, 1016, 1036, 1071
BstF5I GGATG 2 cut(s) 100, 127
BstH2I RGCGCY 1 cut(s) 1032
BstHHI GCGC 3 cut(s) 676, 929, 1031
BstKTI GATC 5 cut(s) 52, 247, 268, 274, 1025
BstMAI GTCTC 5 cut(s) 371, 509, 786, 1034, 1064
BstMBI GATC 5 cut(s) 49, 244, 265, 271, 1022
BstMWI GCNNNNNNNGC 1 cut(s) 1026
BstNI CCWGG 3 cut(s) 449, 768, 1164
BstSCI CCNGG 5 cut(s) 447, 463, 464, 766, 1162
BstSFI CTRYAG 1 cut(s) 165
BstSLI GKGCMC 1 cut(s) 39
BstV1I GCAGC 3 cut(s) 184, 382, 999
BstV2I GAAGAC 3 cut(s) 56, 294, 306
BstX2I RGATCY 2 cut(s) 244, 271
BstYI RGATCY 2 cut(s) 244, 271
Bsu36I CCTNAGG 1 cut(s) 177
BsuRI GGCC 1 cut(s) 766
BtsCI GGATG 2 cut(s) 100, 127
BtsI GCAGTG 1 cut(s) 39
BtsIMutI CAGTG 3 cut(s) 39, 230, 1012
Cac8I GCNNGC 1 cut(s) 594
CciI TCATGA 1 cut(s) 1181
CfoI GCGC 3 cut(s) 676, 929, 1031
Cfr9I CCCGGG 1 cut(s) 464
CseI GACGC 1 cut(s) 657
Csp6I GTAC 3 cut(s) 421, 711, 873
CviAII CATG 3 cut(s) 714, 722, 1182
CviQI GTAC 3 cut(s) 421, 711, 873
DdeI CTNAG 8 cut(s) 138, 177, 318, 535, 773, 1016, 1036, 1071
DpnI GATC 5 cut(s) 51, 246, 267, 273, 1024
DpnII GATC 5 cut(s) 49, 244, 265, 271, 1022
EaeI YGGCCR 1 cut(s) 764
Eam1104I CTCTTC 2 cut(s) 120, 398
EarI CTCTTC 2 cut(s) 120, 398
Eco130I CCWWGG 2 cut(s) 223, 954
Eco47III AGCGCT 1 cut(s) 1030
Eco57I CTGAAG 1 cut(s) 225
Eco81I CCTNAGG 1 cut(s) 177
Eco88I CYCGRG 1 cut(s) 464
EcoRI GAATTC 1 cut(s) 959
EcoRII CCWGG 3 cut(s) 447, 766, 1162
EcoT14I CCWWGG 2 cut(s) 223, 954
ErhI CCWWGG 2 cut(s) 223, 954
Esp3I CGTCTC 1 cut(s) 1034
FaeI CATG 3 cut(s) 717, 725, 1185
FaqI GGGAC 1 cut(s) 903
FatI CATG 3 cut(s) 713, 721, 1181
FblI GTMKAC 1 cut(s) 158
Fnu4HI GCNGC 3 cut(s) 173, 396, 1013
FokI GGATG 2 cut(s) 87, 134
Fsp4HI GCNGC 3 cut(s) 173, 396, 1013
FspBI CTAG 7 cut(s) 152, 363, 384, 645, 965, 1001, 1139
GlaI GCGC 3 cut(s) 675, 928, 1030
GluI GCNGC 3 cut(s) 173, 396, 1013
HaeII RGCGCY 1 cut(s) 1032
HaeIII GGCC 1 cut(s) 766
HapII CCGG 2 cut(s) 119, 465
HgaI GACGC 1 cut(s) 657
HhaI GCGC 3 cut(s) 676, 929, 1031
Hin1II CATG 3 cut(s) 717, 725, 1185
Hin6I GCGC 3 cut(s) 674, 927, 1029
HinP1I GCGC 3 cut(s) 674, 927, 1029
HincII GTYRAC 1 cut(s) 190
HindII GTYRAC 1 cut(s) 190
HinfI GANTC 5 cut(s) 134, 155, 314, 1067, 1135
HpaII CCGG 2 cut(s) 119, 465
HphI GGTGA 2 cut(s) 37, 46
Hpy166II GTNNAC 5 cut(s) 37, 159, 190, 230, 983
Hpy188I TCNGA 8 cut(s) 23, 82, 244, 319, 493, 616, 637, 1039
Hpy188III TCNNGA 8 cut(s) 119, 269, 275, 645, 897, 1001, 1073, 1182
Hpy8I GTNNAC 5 cut(s) 37, 159, 190, 230, 983
HpyAV CCTTC 3 cut(s) 256, 367, 767
HpyCH4III ACNGT 6 cut(s) 234, 583, 872, 917, 987, 1007
HpyCH4IV ACGT 1 cut(s) 1043
HpyCH4V TGCA 7 cut(s) 37, 167, 218, 398, 553, 592, 1173
HpyF10VI GCNNNNNNNGC 1 cut(s) 1026
HpyF3I CTNAG 8 cut(s) 138, 177, 318, 535, 773, 1016, 1036, 1071
HpySE526I ACGT 1 cut(s) 1043
Hsp92II CATG 3 cut(s) 717, 725, 1185
HspAI GCGC 3 cut(s) 674, 927, 1029
Kpn2I TCCGGA 1 cut(s) 118
Kzo9I GATC 5 cut(s) 49, 244, 265, 271, 1022
LmnI GCTCC 6 cut(s) 475, 637, 656, 956, 1096, 1159
Lsp1109I GCAGC 3 cut(s) 184, 382, 999
LweI GCATC 1 cut(s) 540
MaeI CTAG 7 cut(s) 152, 363, 384, 645, 965, 1001, 1139
MaeII ACGT 1 cut(s) 1043
MaeIII GTNAC 2 cut(s) 43, 577
MalI GATC 5 cut(s) 51, 246, 267, 273, 1024
MbiI CCGCTC 1 cut(s) 98
MboI GATC 5 cut(s) 49, 244, 265, 271, 1022
MflI RGATCY 2 cut(s) 244, 271
MhlI GDGCHC 1 cut(s) 39
MlsI TGGCCA 1 cut(s) 766
MluCI AATT 5 cut(s) 439, 487, 597, 609, 959
MluNI TGGCCA 1 cut(s) 766
MlyI GAGTC 3 cut(s) 143, 164, 1061
MmeI TCCRAC 1 cut(s) 769
Mox20I TGGCCA 1 cut(s) 766
MroI TCCGGA 1 cut(s) 118
MroXI GAANNNNTTC 1 cut(s) 802
MscI TGGCCA 1 cut(s) 766
MseI TTAA 3 cut(s) 69, 456, 1086
Msp20I TGGCCA 1 cut(s) 766
MspA1I CMGCKG 1 cut(s) 59
MspI CCGG 2 cut(s) 119, 465
MspR9I CCNGG 5 cut(s) 449, 465, 466, 768, 1164
Mva1269I GAATGC 1 cut(s) 218
MvaI CCWGG 3 cut(s) 449, 768, 1164
MwoI GCNNNNNNNGC 1 cut(s) 1026
NciI CCSGG 2 cut(s) 465, 466
NdeII GATC 5 cut(s) 49, 244, 265, 271, 1022
NlaIII CATG 3 cut(s) 717, 725, 1185
NlaIV GGNNCC 4 cut(s) 273, 831, 865, 1161
NmuCI GTSAC 2 cut(s) 43, 577
PagI TCATGA 1 cut(s) 1181
PcsI WCGNNNNNNNCGW 1 cut(s) 288
PctI GAATGC 1 cut(s) 218
PdmI GAANNNNTTC 1 cut(s) 802
PfeI GAWTC 2 cut(s) 314, 1135
PkrI GCNGC 3 cut(s) 174, 397, 1014
PleI GAGTC 3 cut(s) 142, 163, 1061
PpsI GAGTC 3 cut(s) 142, 163, 1061
Psp6I CCWGG 3 cut(s) 447, 766, 1162
PspGI CCWGG 3 cut(s) 447, 766, 1162
PspN4I GGNNCC 4 cut(s) 273, 831, 865, 1161
PsrI GAACNNNNNNTAC 2 cut(s) 856, 888
PstI CTGCAG 1 cut(s) 169
PsuI RGATCY 2 cut(s) 244, 271
RsaI GTAC 3 cut(s) 422, 712, 874
RsaNI GTAC 3 cut(s) 421, 711, 873
SaqAI TTAA 3 cut(s) 69, 456, 1086
SatI GCNGC 3 cut(s) 173, 396, 1013
Sau3AI GATC 5 cut(s) 49, 244, 265, 271, 1022
SchI GAGTC 3 cut(s) 143, 164, 1061
ScrFI CCNGG 5 cut(s) 449, 465, 466, 768, 1164
SduI GDGCHC 1 cut(s) 39
SfaNI GCATC 1 cut(s) 540
SfcI CTRYAG 1 cut(s) 165
SmaI CCCGGG 1 cut(s) 466
SpeI ACTAGT 1 cut(s) 383
Sse9I AATT 5 cut(s) 439, 487, 597, 609, 959
SsiI CCGC 4 cut(s) 57, 96, 975, 1020
SspI AATATT 1 cut(s) 524
SspMI CTAG 7 cut(s) 152, 363, 384, 645, 965, 1001, 1139
StyD4I CCNGG 5 cut(s) 447, 463, 464, 766, 1162
StyI CCWWGG 2 cut(s) 223, 954
TaaI ACNGT 6 cut(s) 234, 583, 872, 917, 987, 1007
TaiI ACGT 1 cut(s) 1046
TaqI TCGA 1 cut(s) 1025
TasI AATT 5 cut(s) 439, 487, 597, 609, 959
TatI WGTACW 2 cut(s) 420, 710
TfiI GAWTC 2 cut(s) 314, 1135
Tru1I TTAA 3 cut(s) 69, 456, 1086
Tru9I TTAA 3 cut(s) 69, 456, 1086
TscAI CASTG 3 cut(s) 39, 237, 1012
TseFI GTSAC 2 cut(s) 43, 577
TseI GCWGC 3 cut(s) 172, 395, 1012
Tsp45I GTSAC 2 cut(s) 43, 577
TspDTI ATGAA 2 cut(s) 386, 557
TspMI CCCGGG 1 cut(s) 464
TspRI CASTG 3 cut(s) 39, 237, 1012
VneI GTGCAC 1 cut(s) 35
XapI RAATTY 4 cut(s) 439, 487, 609, 959
XbaI TCTAGA 2 cut(s) 644, 1000
XmaI CCCGGG 1 cut(s) 464
XmiI GTMKAC 1 cut(s) 158
XmnI GAANNNNTTC 1 cut(s) 802
XspI CTAG 7 cut(s) 152, 363, 384, 645, 965, 1001, 1139
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.