RchiOBHm_Chr2g0114361

Oxidation resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0001099
Physical Location & Seq
Reverse (-)
26329259 .. 26331158
1900 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ48759

Sequence Viewer

Length: 678 bp
ATGGGTAGGCCAAGGAGTCTTCGCAGCAAAGCGGCCCACTTTGTAACTGATATCACTACTGGATTGCTCAACCCCATTTCTGACAAACCCTCCAAACCCTCTCCCTTCTCCTCTTCCTATGAAGAAGATGTGGATGGGTCCAGAGGAAGTCAAAATGGAACAATGAGTGAAGAGAGTCCAGCTAATCCAGTTGATGGGCCTGACACTTCTTCATTTACTGCATTTCTCTACTCACTGTTATCGTCATCCGGGTCGGGAGATAAGAGCAAAAGTTCGGATGAACAGGTTGATGACCAAATGGATAAGAGCAACTCATTATCTGATTCTGCAGTGAAAGCAAACAGTGGGAAGAGAAGCTTATTTTCCAAGGGGGAACACACGCTTAGTAAGGCTATGTACCAGGCTGCAAGATTTGGTTGGTATCGGAGTCAAGAGCGGAAGGGTAACTTTGACGTGAAAGGTGATGATGGGAATGATTCTGAGTTTACTAGAGTTGAGATGAGGCATATGCATAAAGCACAGAAGCCTGTGGCTTTGGTTCATCTACCAGACGTCTCCGTACCTTCTTTACTTAATGAGAAAAATAGAATTGCTCTTTACAGTTCACTCCCAGCGCTAGTTCAGGGAAGTCAATGGTTGTTACTATATAGGTGGGGAAACTTGGAGTTTCATAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TLD

Protein Analysis

225

Amino Acids

24.74

Weight (kDa)

6.6

Isoelectric Point (pI)

48.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 555
AccB7I CCANNNNNTGG 1 cut(s) 194
AccBSI CCGCTC 1 cut(s) 436
AciI CCGC 2 cut(s) 32, 436
AcyI GRCGYC 1 cut(s) 552
AfaI GTAC 2 cut(s) 398, 561
AfeI AGCGCT 1 cut(s) 615
AfiI CCNNNNNNNGG 1 cut(s) 194
AjiI CACGTC 1 cut(s) 454
AjnI CCWGG 1 cut(s) 399
AluBI AGCT 2 cut(s) 182, 357
AluI AGCT 2 cut(s) 182, 357
Alw26I GTCTC 1 cut(s) 559
Aor51HI AGCGCT 1 cut(s) 615
AoxI GGCC 3 cut(s) 8, 33, 197
ApeKI GCWGC 2 cut(s) 24, 404
AspLEI GCGC 1 cut(s) 616
AspS9I GGNCC 3 cut(s) 34, 138, 197
AsuC2I CCSGG 1 cut(s) 250
AsuHPI GGTGA 1 cut(s) 473
AvaII GGWCC 1 cut(s) 138
BbsI GAAGAC 1 cut(s) 11
BbvI GCAGC 2 cut(s) 36, 391
BccI CCATC 3 cut(s) 128, 188, 461
BciT130I CCWGG 1 cut(s) 401
BcnI CCSGG 1 cut(s) 250
BcoDI GTCTC 1 cut(s) 559
BfaI CTAG 2 cut(s) 489, 617
BfmI CTRYAG 1 cut(s) 327
BfoI RGCGCY 1 cut(s) 617
BisI GCNGC 3 cut(s) 25, 33, 405
BlsI GCNGC 3 cut(s) 26, 34, 406
Bme1390I CCNGG 2 cut(s) 250, 401
Bme18I GGWCC 1 cut(s) 138
BmgBI CACGTC 1 cut(s) 454
BmgT120I GGNCC 3 cut(s) 34, 138, 197
BmiI GGNNCC 1 cut(s) 139
BmrFI CCNGG 2 cut(s) 250, 401
BpiI GAAGAC 1 cut(s) 11
BpuMI CCSGG 1 cut(s) 250
BsaHI GRCGYC 1 cut(s) 552
BsaJI CCNNGG 2 cut(s) 11, 366
BsaXI ACNNNNNCTCC 2 cut(s) 74, 104
Bsc4I CCNNNNNNNGG 1 cut(s) 194
Bse1I ACTGG 2 cut(s) 64, 188
BseBI CCWGG 1 cut(s) 401
BseDI CCNNGG 2 cut(s) 11, 366
BseGI GGATG 3 cut(s) 139, 245, 283
BseLI CCNNNNNNNGG 1 cut(s) 194
BseMII CTCAG 1 cut(s) 471
BseNI ACTGG 2 cut(s) 64, 188
BseRI GAGGAG 1 cut(s) 100
BseXI GCAGC 2 cut(s) 36, 391
BseYI CCCAGC 1 cut(s) 610
BshFI GGCC 3 cut(s) 10, 35, 199
BsiSI CCGG 1 cut(s) 249
BslI CCNNNNNNNGG 1 cut(s) 194
BsmAI GTCTC 1 cut(s) 559
BsmBI CGTCTC 1 cut(s) 559
BsnI GGCC 3 cut(s) 10, 35, 199
BspACI CCGC 2 cut(s) 32, 436
BspANI GGCC 3 cut(s) 10, 35, 199
BspCNI CTCAG 1 cut(s) 472
BspLI GGNNCC 1 cut(s) 139
BspMAI CTGCAG 1 cut(s) 331
BsrBI CCGCTC 1 cut(s) 436
BsrI ACTGG 2 cut(s) 64, 188
BssECI CCNNGG 2 cut(s) 11, 366
BssNI GRCGYC 1 cut(s) 552
BssT1I CCWWGG 2 cut(s) 11, 366
Bst2UI CCWGG 1 cut(s) 401
Bst4CI ACNGT 3 cut(s) 237, 344, 602
Bst6I CTCTTC 3 cut(s) 118, 165, 344
BstACI GRCGYC 1 cut(s) 552
BstDEI CTNAG 2 cut(s) 383, 480
BstF5I GGATG 3 cut(s) 139, 245, 283
BstH2I RGCGCY 1 cut(s) 617
BstHHI GCGC 1 cut(s) 616
BstMAI GTCTC 1 cut(s) 559
BstMWI GCNNNNNNNGC 1 cut(s) 335
BstNI CCWGG 1 cut(s) 401
BstSCI CCNGG 2 cut(s) 248, 399
BstSFI CTRYAG 1 cut(s) 327
BstV1I GCAGC 2 cut(s) 36, 391
BstV2I GAAGAC 1 cut(s) 11
BsuRI GGCC 3 cut(s) 10, 35, 199
BtrI CACGTC 1 cut(s) 454
BtsCI GGATG 3 cut(s) 139, 245, 283
BtsI GCAGTG 1 cut(s) 336
BtsIMutI CAGTG 3 cut(s) 233, 336, 349
CfoI GCGC 1 cut(s) 616
Cfr13I GGNCC 3 cut(s) 34, 138, 197
Csp6I GTAC 2 cut(s) 397, 560
CviJI RGCY 9 cut(s) 10, 35, 182, 199, 357, 392, 404, 526, 533
CviKI_1 RGCY 9 cut(s) 10, 35, 182, 199, 357, 392, 404, 526, 533
CviQI GTAC 2 cut(s) 397, 560
DdeI CTNAG 2 cut(s) 383, 480
Eam1104I CTCTTC 3 cut(s) 118, 165, 344
EarI CTCTTC 3 cut(s) 118, 165, 344
Eco130I CCWWGG 2 cut(s) 11, 366
Eco32I GATATC 1 cut(s) 52
Eco47I GGWCC 1 cut(s) 138
Eco47III AGCGCT 1 cut(s) 615
EcoRII CCWGG 1 cut(s) 399
EcoRV GATATC 1 cut(s) 52
EcoT14I CCWWGG 2 cut(s) 11, 366
EcoT22I ATGCAT 1 cut(s) 513
ErhI CCWWGG 2 cut(s) 11, 366
Esp3I CGTCTC 1 cut(s) 559
FaiI YATR 8 cut(s) 120, 395, 507, 509, 513, 646, 648, 672
FalI AAGNNNNNCTT 4 cut(s) 341, 373, 431, 463
FauNDI CATATG 1 cut(s) 507
Fnu4HI GCNGC 3 cut(s) 25, 33, 405
FokI GGATG 3 cut(s) 146, 232, 290
Fsp4HI GCNGC 3 cut(s) 25, 33, 405
FspBI CTAG 2 cut(s) 489, 617
GlaI GCGC 1 cut(s) 615
GluI GCNGC 3 cut(s) 25, 33, 405
GsaI CCCAGC 1 cut(s) 614
HaeII RGCGCY 1 cut(s) 617
HaeIII GGCC 3 cut(s) 10, 35, 199
HapII CCGG 1 cut(s) 249
HhaI GCGC 1 cut(s) 616
Hin1I GRCGYC 1 cut(s) 552
Hin6I GCGC 1 cut(s) 614
HinP1I GCGC 1 cut(s) 614
HindIII AAGCTT 1 cut(s) 355
HinfI GANTC 5 cut(s) 16, 175, 323, 427, 476
HpaII CCGG 1 cut(s) 249
HphI GGTGA 1 cut(s) 473
Hpy166II GTNNAC 2 cut(s) 486, 605
Hpy188I TCNGA 5 cut(s) 82, 277, 322, 426, 481
Hpy188III TCNNGA 3 cut(s) 141, 255, 431
Hpy8I GTNNAC 2 cut(s) 486, 605
HpyAV CCTTC 3 cut(s) 115, 433, 573
HpyCH4III ACNGT 3 cut(s) 237, 344, 602
HpyCH4IV ACGT 2 cut(s) 453, 552
HpyCH4V TGCA 4 cut(s) 221, 329, 407, 511
HpyF10VI GCNNNNNNNGC 1 cut(s) 335
HpyF3I CTNAG 2 cut(s) 383, 480
HpySE526I ACGT 2 cut(s) 453, 552
Hsp92I GRCGYC 1 cut(s) 552
HspAI GCGC 1 cut(s) 614
Lsp1109I GCAGC 2 cut(s) 36, 391
MaeI CTAG 2 cut(s) 489, 617
MaeII ACGT 2 cut(s) 453, 552
MaeIII GTNAC 3 cut(s) 43, 443, 639
MbiI CCGCTC 1 cut(s) 436
MboII GAAGA 7 cut(s) 11, 105, 134, 137, 182, 201, 361
MluCI AATT 1 cut(s) 588
MlyI GAGTC 3 cut(s) 25, 184, 436
MnlI CCTC 5 cut(s) 100, 109, 121, 137, 495
Mph1103I ATGCAT 1 cut(s) 513
MseI TTAA 1 cut(s) 573
MspI CCGG 1 cut(s) 249
MspR9I CCNGG 2 cut(s) 250, 401
MvaI CCWGG 1 cut(s) 401
MwoI GCNNNNNNNGC 1 cut(s) 335
NciI CCSGG 1 cut(s) 250
NdeI CATATG 1 cut(s) 507
NlaIV GGNNCC 1 cut(s) 139
NsiI ATGCAT 1 cut(s) 513
PfeI GAWTC 2 cut(s) 323, 476
PflMI CCANNNNNTGG 1 cut(s) 194
PkrI GCNGC 3 cut(s) 26, 34, 406
PleI GAGTC 3 cut(s) 24, 183, 435
PpsI GAGTC 3 cut(s) 24, 183, 435
Psp6I CCWGG 1 cut(s) 399
PspFI CCCAGC 1 cut(s) 610
PspGI CCWGG 1 cut(s) 399
PspN4I GGNNCC 1 cut(s) 139
PspPI GGNCC 3 cut(s) 34, 138, 197
PstI CTGCAG 1 cut(s) 331
RsaI GTAC 2 cut(s) 398, 561
RsaNI GTAC 2 cut(s) 397, 560
SaqAI TTAA 1 cut(s) 573
SatI GCNGC 3 cut(s) 25, 33, 405
Sau96I GGNCC 3 cut(s) 34, 138, 197
SchI GAGTC 3 cut(s) 25, 184, 436
ScrFI CCNGG 2 cut(s) 250, 401
SetI ASST 8 cut(s) 184, 288, 359, 456, 463, 555, 565, 653
SfcI CTRYAG 1 cut(s) 327
SinI GGWCC 1 cut(s) 138
Sse9I AATT 1 cut(s) 588
SsiI CCGC 2 cut(s) 32, 436
SspMI CTAG 2 cut(s) 489, 617
StyD4I CCNGG 2 cut(s) 248, 399
StyI CCWWGG 2 cut(s) 11, 366
TaaI ACNGT 3 cut(s) 237, 344, 602
TaiI ACGT 2 cut(s) 456, 555
TasI AATT 1 cut(s) 588
TauI GCSGC 1 cut(s) 35
TfiI GAWTC 2 cut(s) 323, 476
Tru1I TTAA 1 cut(s) 573
Tru9I TTAA 1 cut(s) 573
TscAI CASTG 3 cut(s) 240, 336, 349
TseI GCWGC 2 cut(s) 24, 404
TspDTI ATGAA 5 cut(s) 135, 201, 294, 530, 659
TspGWI ACGGA 1 cut(s) 547
TspRI CASTG 3 cut(s) 240, 336, 349
Van91I CCANNNNNTGG 1 cut(s) 194
VpaK11BI GGWCC 1 cut(s) 138
XspI CTAG 2 cut(s) 489, 617
ZraI GACGTC 1 cut(s) 553
Zsp2I ATGCAT 1 cut(s) 513
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.