RchiOBHm_Chr2g0113781

Oxidation resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0001099
Physical Location & Seq
Reverse (-)
25901763 .. 25904116
2354 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ48709

Sequence Viewer

Length: 414 bp
ATGCTTTGGCCTGGCCTCAGTTTGCTGGTTGTTGGAGACCGTAAAGGTGCAGTTTTTGGTGGCTTGGTGGAGGCACCTCTAAGACCAACCAACAAGAAGTATCAGGGAACAAATGATACATTTGTTTTCTCAAATACACCTGACCATCCAGTAATATCTCGCCCTACAGGTGCCAACCGCTATTTCACATTGTGCGCTACTGACTTTTTAGCTATTGGTGGGTGGTCATTTTGCACTCTATTTGAACAATTGAGTGGATCAAGTTCAGTTTCAGAAACCTATGGGAATCCATGTCTTGCAAACTCAGAAGACTTTGATGTGAAAGAAGTAGAGTTATGGGGTTTTGTTTATGCTACTAAGTATGAGGAAGTACTTGCTCAAAGCCGTATGGAGTCACCTGGGATTTGCCGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TLD

Protein Analysis

137

Amino Acids

15.07

Weight (kDa)

4.91

Isoelectric Point (pI)

38.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TLD PF07534 6 - 115 1.1e-21 TLDc domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 73, 170
AciI CCGC 1 cut(s) 178
AclWI GGATC 1 cut(s) 265
AdeI CACNNNGTG 1 cut(s) 192
AfaI GTAC 1 cut(s) 372
AgsI TTSAA 1 cut(s) 245
AjnI CCWGG 2 cut(s) 10, 397
AjuI GAANNNNNNNTTGG 2 cut(s) 167, 199
AluBI AGCT 1 cut(s) 212
AluI AGCT 1 cut(s) 212
Alw26I GTCTC 1 cut(s) 30
AlwI GGATC 1 cut(s) 265
AoxI GGCC 2 cut(s) 8, 13
AspLEI GCGC 1 cut(s) 197
AsuHPI GGTGA 1 cut(s) 387
BaeI ACNNNNGTAYC 2 cut(s) 108, 141
BanI GGYRCC 2 cut(s) 73, 170
BbsI GAAGAC 1 cut(s) 315
BccI CCATC 1 cut(s) 153
BceAI ACGGC 1 cut(s) 369
BciT130I CCWGG 2 cut(s) 12, 399
BcoDI GTCTC 1 cut(s) 30
BfmI CTRYAG 1 cut(s) 165
BmcAI AGTACT 1 cut(s) 372
Bme1390I CCNGG 2 cut(s) 12, 399
BmiI GGNNCC 2 cut(s) 75, 172
BmrFI CCNGG 2 cut(s) 12, 399
BpiI GAAGAC 1 cut(s) 315
BsaI GGTCTC 1 cut(s) 30
BsaJI CCNNGG 1 cut(s) 398
Bse1I ACTGG 1 cut(s) 149
BseBI CCWGG 2 cut(s) 12, 399
BseDI CCNNGG 1 cut(s) 398
BseGI GGATG 1 cut(s) 145
BseMII CTCAG 2 cut(s) 31, 318
BseNI ACTGG 1 cut(s) 149
BsgI GTGCAG 1 cut(s) 69
BshFI GGCC 2 cut(s) 10, 15
BshNI GGYRCC 2 cut(s) 73, 170
BsmAI GTCTC 1 cut(s) 30
BsnI GGCC 2 cut(s) 10, 15
Bso31I GGTCTC 1 cut(s) 30
Bsp143I GATC 1 cut(s) 257
BspACI CCGC 1 cut(s) 178
BspANI GGCC 2 cut(s) 10, 15
BspCNI CTCAG 2 cut(s) 30, 317
BspLI GGNNCC 2 cut(s) 75, 172
BspPI GGATC 1 cut(s) 265
BspT107I GGYRCC 2 cut(s) 73, 170
BspTNI GGTCTC 1 cut(s) 30
BsrI ACTGG 1 cut(s) 149
BssECI CCNNGG 1 cut(s) 398
BssMI GATC 1 cut(s) 257
Bst2UI CCWGG 2 cut(s) 12, 399
Bst4CI ACNGT 1 cut(s) 41
BstDEI CTNAG 4 cut(s) 17, 80, 304, 357
BstF5I GGATG 1 cut(s) 145
BstHHI GCGC 1 cut(s) 197
BstKTI GATC 1 cut(s) 260
BstMAI GTCTC 1 cut(s) 30
BstMBI GATC 1 cut(s) 257
BstNI CCWGG 2 cut(s) 12, 399
BstSCI CCNGG 2 cut(s) 10, 397
BstSFI CTRYAG 1 cut(s) 165
BstV2I GAAGAC 1 cut(s) 315
BsuRI GGCC 2 cut(s) 10, 15
BtsCI GGATG 1 cut(s) 145
CfoI GCGC 1 cut(s) 197
Csp6I GTAC 1 cut(s) 371
CviAII CATG 1 cut(s) 291
CviJI RGCY 5 cut(s) 10, 15, 63, 212, 384
CviKI_1 RGCY 5 cut(s) 10, 15, 63, 212, 384
CviQI GTAC 1 cut(s) 371
DdeI CTNAG 4 cut(s) 17, 80, 304, 357
DpnI GATC 1 cut(s) 259
DpnII GATC 1 cut(s) 257
DraIII CACNNNGTG 1 cut(s) 192
Eco31I GGTCTC 1 cut(s) 30
EcoRII CCWGG 2 cut(s) 10, 397
FaeI CATG 1 cut(s) 294
FaiI YATR 6 cut(s) 282, 292, 337, 351, 363, 389
FatI CATG 1 cut(s) 290
FokI GGATG 1 cut(s) 132
GlaI GCGC 1 cut(s) 196
HaeIII GGCC 2 cut(s) 10, 15
HhaI GCGC 1 cut(s) 197
Hin1II CATG 1 cut(s) 294
Hin6I GCGC 1 cut(s) 195
HinP1I GCGC 1 cut(s) 195
HinfI GANTC 2 cut(s) 286, 392
HphI GGTGA 1 cut(s) 387
Hpy188I TCNGA 2 cut(s) 274, 307
HpyCH4III ACNGT 1 cut(s) 41
HpyCH4V TGCA 3 cut(s) 50, 234, 299
HpyF3I CTNAG 4 cut(s) 17, 80, 304, 357
Hsp92II CATG 1 cut(s) 294
HspAI GCGC 1 cut(s) 195
Kzo9I GATC 1 cut(s) 257
LpnPI CCDG 7 cut(s) 11, 24, 89, 153, 153, 162, 384
MaeIII GTNAC 1 cut(s) 393
MalI GATC 1 cut(s) 259
MboI GATC 1 cut(s) 257
MboII GAAGA 1 cut(s) 320
MfeI CAATTG 1 cut(s) 248
MluCI AATT 1 cut(s) 248
MlyI GAGTC 1 cut(s) 401
MmeI TCCRAC 1 cut(s) 13
MnlI CCTC 4 cut(s) 26, 64, 87, 358
MspR9I CCNGG 2 cut(s) 12, 399
MunI CAATTG 1 cut(s) 248
MvaI CCWGG 2 cut(s) 12, 399
NdeII GATC 1 cut(s) 257
NlaIII CATG 1 cut(s) 294
NlaIV GGNNCC 2 cut(s) 75, 172
NmuCI GTSAC 1 cut(s) 393
PfeI GAWTC 1 cut(s) 286
PleI GAGTC 1 cut(s) 400
PpsI GAGTC 1 cut(s) 400
Psp6I CCWGG 2 cut(s) 10, 397
PspGI CCWGG 2 cut(s) 10, 397
PspN4I GGNNCC 2 cut(s) 75, 172
PsrI GAACNNNNNNTAC 2 cut(s) 100, 132
RsaI GTAC 1 cut(s) 372
RsaNI GTAC 1 cut(s) 371
Sau3AI GATC 1 cut(s) 257
ScaI AGTACT 1 cut(s) 372
SchI GAGTC 1 cut(s) 401
ScrFI CCNGG 2 cut(s) 12, 399
SetI ASST 7 cut(s) 49, 79, 142, 172, 214, 281, 400
SfcI CTRYAG 1 cut(s) 165
Sse9I AATT 1 cut(s) 248
SsiI CCGC 1 cut(s) 178
StyD4I CCNGG 2 cut(s) 10, 397
TaaI ACNGT 1 cut(s) 41
TasI AATT 1 cut(s) 248
TatI WGTACW 1 cut(s) 370
TfiI GAWTC 1 cut(s) 286
TseFI GTSAC 1 cut(s) 393
Tsp45I GTSAC 1 cut(s) 393
ZrmI AGTACT 1 cut(s) 372
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.