Rh2DG254000

Oxidation resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0001099
Physical Location & Seq
Reverse (-)
26613825 .. 26636199
22375 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG254000.1

Sequence Viewer

Length: 779 bp
ATGCGATGCGAAGATGTGGACGGGTCCAAAGGAAGTCAAAATGGAACAATGAGTGAAGAGAGTCCAGCTAATCCAGAGTCGGGAGATAAGAGCAAAAGTTCGGATGAACAGGTTGATGACCAAATGGATAAGAGCAACTCATTGTCTGATTCTGCAGTGAAAGCAAACAGTGGGAAGAGAAGCTTATTTTCCAAGGGGAAACACACGCTTAGTAAAGCTATGTACCAGGCTGCAAGATTTGGTGGGTATCGGAGTCAAGAGCGGAAGGAAGCCTGTGGCTTTGGTTCATCTACCAGACGTCTCCGTACCTCTTTACTTCTTACTGAGAAAAATAGAATTGCTCTTTACAGTTCACTCCCAGCGCTAGTTCAGGGAAGTCAATGGTTGTTACTATCTAGTACATGGAGGCATGGCATATCACTTTCAACCCTATACAGAAGAAGTATGCTTTGGCCTGGCCTCAGTTTGCTGGTTGTTGGAGACCGTAAAGGTGCAGTTTTTGATGGCTTGGTGGAGGCACCTCTAAGACCAACCAACAAGAAGTATCAGGGAACAAATAATACATTTGTTTTCACAAATACACCTGACCATCCTGTTATAGATCACCCTACAGGTGGAAGCTTTTTGCCTGCCTTGAAATGGTTTTCATATATGTACGAGATAGTGAAAGCAATTTGGATATCTTCTGCTTACTTATGCTTGCAAAAGGCTAGCTGCACCTTGAAACACCTCTTCAACTCTTTTCCGTTACAAAAGGAGCACAGCGGCCATATCTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TLD

Protein Analysis

259

Amino Acids

28.71

Weight (kDa)

9.4

Isoelectric Point (pI)

49.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TLD PF07534 103 - 200 1.2e-15 TLDc domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 301
AccB1I GGYRCC 1 cut(s) 517
AccBSI CCGCTC 1 cut(s) 262
AciI CCGC 2 cut(s) 262, 765
AcoI YGGCCR 1 cut(s) 766
AcyI GRCGYC 1 cut(s) 298
AfaI GTAC 4 cut(s) 224, 307, 400, 656
AfeI AGCGCT 1 cut(s) 363
AfiI CCNNNNNNNGG 3 cut(s) 80, 614, 639
AgsI TTSAA 4 cut(s) 426, 637, 724, 736
AjnI CCWGG 2 cut(s) 225, 454
AjuI GAANNNNNNNTTGG 2 cut(s) 433, 465
AluBI AGCT 5 cut(s) 68, 183, 218, 621, 714
AluI AGCT 5 cut(s) 68, 183, 218, 621, 714
Alw21I GWGCWC 1 cut(s) 762
Alw26I GTCTC 2 cut(s) 305, 474
Aor51HI AGCGCT 1 cut(s) 363
AoxI GGCC 3 cut(s) 452, 457, 766
ApeKI GCWGC 2 cut(s) 230, 714
AspLEI GCGC 1 cut(s) 364
AspS9I GGNCC 1 cut(s) 24
AsuHPI GGTGA 1 cut(s) 596
AsuNHI GCTAGC 1 cut(s) 710
AvaII GGWCC 1 cut(s) 24
BanI GGYRCC 1 cut(s) 517
Bbv12I GWGCWC 1 cut(s) 762
BbvI GCAGC 2 cut(s) 217, 701
BccI CCATC 2 cut(s) 497, 597
BciT130I CCWGG 2 cut(s) 227, 456
BcoDI GTCTC 2 cut(s) 305, 474
BfaI CTAG 3 cut(s) 365, 396, 711
BfmI CTRYAG 3 cut(s) 153, 609, 775
BfoI RGCGCY 1 cut(s) 365
BisI GCNGC 3 cut(s) 231, 715, 766
BlsI GCNGC 3 cut(s) 232, 716, 767
Bme1390I CCNGG 2 cut(s) 227, 456
Bme18I GGWCC 1 cut(s) 24
BmgT120I GGNCC 1 cut(s) 24
BmiI GGNNCC 2 cut(s) 25, 519
BmrFI CCNGG 2 cut(s) 227, 456
BmtI GCTAGC 1 cut(s) 714
BsaHI GRCGYC 1 cut(s) 298
BsaI GGTCTC 1 cut(s) 474
BsaJI CCNNGG 1 cut(s) 192
Bsc4I CCNNNNNNNGG 3 cut(s) 80, 614, 639
BseBI CCWGG 2 cut(s) 227, 456
BseDI CCNNGG 1 cut(s) 192
BseGI GGATG 2 cut(s) 109, 589
BseLI CCNNNNNNNGG 3 cut(s) 80, 614, 639
BseMII CTCAG 2 cut(s) 315, 475
BseXI GCAGC 2 cut(s) 217, 701
BseYI CCCAGC 1 cut(s) 358
BsgI GTGCAG 2 cut(s) 513, 700
BshFI GGCC 3 cut(s) 454, 459, 768
BshNI GGYRCC 1 cut(s) 517
BsiHKAI GWGCWC 1 cut(s) 762
BslI CCNNNNNNNGG 3 cut(s) 80, 614, 639
BsmAI GTCTC 2 cut(s) 305, 474
BsmBI CGTCTC 1 cut(s) 305
BsnI GGCC 3 cut(s) 454, 459, 768
Bso31I GGTCTC 1 cut(s) 474
Bsp1286I GDGCHC 1 cut(s) 762
Bsp143I GATC 1 cut(s) 601
BspACI CCGC 2 cut(s) 262, 765
BspANI GGCC 3 cut(s) 454, 459, 768
BspCNI CTCAG 2 cut(s) 316, 474
BspLI GGNNCC 2 cut(s) 25, 519
BspMAI CTGCAG 1 cut(s) 157
BspOI GCTAGC 1 cut(s) 714
BspT107I GGYRCC 1 cut(s) 517
BspTNI GGTCTC 1 cut(s) 474
BsrBI CCGCTC 1 cut(s) 262
BssECI CCNNGG 1 cut(s) 192
BssMI GATC 1 cut(s) 601
BssNI GRCGYC 1 cut(s) 298
BssT1I CCWWGG 1 cut(s) 192
Bst2UI CCWGG 2 cut(s) 227, 456
Bst4CI ACNGT 3 cut(s) 170, 350, 485
Bst6I CTCTTC 3 cut(s) 51, 170, 737
BstACI GRCGYC 1 cut(s) 298
BstC8I GCNNGC 3 cut(s) 630, 701, 712
BstDEI CTNAG 4 cut(s) 209, 324, 461, 524
BstF5I GGATG 2 cut(s) 109, 589
BstH2I RGCGCY 1 cut(s) 365
BstHHI GCGC 1 cut(s) 364
BstKTI GATC 1 cut(s) 604
BstMAI GTCTC 2 cut(s) 305, 474
BstMBI GATC 1 cut(s) 601
BstMWI GCNNNNNNNGC 1 cut(s) 161
BstNI CCWGG 2 cut(s) 227, 456
BstSCI CCNGG 2 cut(s) 225, 454
BstSFI CTRYAG 3 cut(s) 153, 609, 775
BstV1I GCAGC 2 cut(s) 217, 701
BsuRI GGCC 3 cut(s) 454, 459, 768
BtgZI GCGATG 1 cut(s) 19
BtsCI GGATG 2 cut(s) 109, 589
BtsI GCAGTG 1 cut(s) 162
BtsIMutI CAGTG 2 cut(s) 162, 175
Cac8I GCNNGC 3 cut(s) 630, 701, 712
CfoI GCGC 1 cut(s) 364
Cfr13I GGNCC 1 cut(s) 24
Csp6I GTAC 4 cut(s) 223, 306, 399, 655
CviAII CATG 2 cut(s) 402, 410
CviQI GTAC 4 cut(s) 223, 306, 399, 655
DdeI CTNAG 4 cut(s) 209, 324, 461, 524
DpnI GATC 1 cut(s) 603
DpnII GATC 1 cut(s) 601
EaeI YGGCCR 1 cut(s) 766
Eam1104I CTCTTC 3 cut(s) 51, 170, 737
EarI CTCTTC 3 cut(s) 51, 170, 737
Eco130I CCWWGG 1 cut(s) 192
Eco31I GGTCTC 1 cut(s) 474
Eco32I GATATC 1 cut(s) 681
Eco47I GGWCC 1 cut(s) 24
Eco47III AGCGCT 1 cut(s) 363
EcoRII CCWGG 2 cut(s) 225, 454
EcoRV GATATC 1 cut(s) 681
EcoT14I CCWWGG 1 cut(s) 192
ErhI CCWWGG 1 cut(s) 192
Esp3I CGTCTC 1 cut(s) 305
FaeI CATG 2 cut(s) 405, 413
FalI AAGNNNNNCTT 2 cut(s) 167, 199
FatI CATG 2 cut(s) 401, 409
Fnu4HI GCNGC 3 cut(s) 231, 715, 766
FokI GGATG 2 cut(s) 116, 576
Fsp4HI GCNGC 3 cut(s) 231, 715, 766
FspBI CTAG 3 cut(s) 365, 396, 711
GlaI GCGC 1 cut(s) 363
GluI GCNGC 3 cut(s) 231, 715, 766
GsaI CCCAGC 1 cut(s) 362
HaeII RGCGCY 1 cut(s) 365
HaeIII GGCC 3 cut(s) 454, 459, 768
HhaI GCGC 1 cut(s) 364
Hin1I GRCGYC 1 cut(s) 298
Hin1II CATG 2 cut(s) 405, 413
Hin6I GCGC 1 cut(s) 362
HinP1I GCGC 1 cut(s) 362
HindIII AAGCTT 2 cut(s) 181, 619
HinfI GANTC 4 cut(s) 61, 77, 149, 253
HphI GGTGA 1 cut(s) 596
Hpy166II GTNNAC 2 cut(s) 19, 353
Hpy188I TCNGA 3 cut(s) 103, 148, 252
Hpy188III TCNNGA 3 cut(s) 74, 81, 257
Hpy8I GTNNAC 2 cut(s) 19, 353
HpyAV CCTTC 1 cut(s) 259
HpyCH4III ACNGT 3 cut(s) 170, 350, 485
HpyCH4IV ACGT 1 cut(s) 298
HpyCH4V TGCA 5 cut(s) 155, 233, 494, 703, 717
HpyF10VI GCNNNNNNNGC 1 cut(s) 161
HpyF3I CTNAG 4 cut(s) 209, 324, 461, 524
HpySE526I ACGT 1 cut(s) 298
Hsp92I GRCGYC 1 cut(s) 298
Hsp92II CATG 2 cut(s) 405, 413
HspAI GCGC 1 cut(s) 362
Kzo9I GATC 1 cut(s) 601
LmnI GCTCC 1 cut(s) 757
Lsp1109I GCAGC 2 cut(s) 217, 701
MaeI CTAG 3 cut(s) 365, 396, 711
MaeII ACGT 1 cut(s) 298
MaeIII GTNAC 2 cut(s) 387, 747
MalI GATC 1 cut(s) 603
MbiI CCGCTC 1 cut(s) 262
MboI GATC 1 cut(s) 601
MboII GAAGA 6 cut(s) 23, 68, 187, 450, 675, 724
MhlI GDGCHC 1 cut(s) 762
MluCI AATT 2 cut(s) 336, 672
MlyI GAGTC 3 cut(s) 70, 86, 262
MmeI TCCRAC 1 cut(s) 457
MnlI CCTC 6 cut(s) 319, 399, 470, 508, 531, 740
MspA1I CMGCKG 1 cut(s) 765
MspR9I CCNGG 2 cut(s) 227, 456
MvaI CCWGG 2 cut(s) 227, 456
MwoI GCNNNNNNNGC 1 cut(s) 161
NdeII GATC 1 cut(s) 601
NheI GCTAGC 1 cut(s) 710
NlaIII CATG 2 cut(s) 405, 413
NlaIV GGNNCC 2 cut(s) 25, 519
PfeI GAWTC 1 cut(s) 149
PkrI GCNGC 3 cut(s) 232, 716, 767
PleI GAGTC 3 cut(s) 69, 85, 261
PpsI GAGTC 3 cut(s) 69, 85, 261
Psp6I CCWGG 2 cut(s) 225, 454
PspFI CCCAGC 1 cut(s) 358
PspGI CCWGG 2 cut(s) 225, 454
PspN4I GGNNCC 2 cut(s) 25, 519
PspPI GGNCC 1 cut(s) 24
PsrI GAACNNNNNNTAC 2 cut(s) 544, 576
PstI CTGCAG 1 cut(s) 157
RsaI GTAC 4 cut(s) 224, 307, 400, 656
RsaNI GTAC 4 cut(s) 223, 306, 399, 655
SatI GCNGC 3 cut(s) 231, 715, 766
Sau3AI GATC 1 cut(s) 601
Sau96I GGNCC 1 cut(s) 24
SchI GAGTC 3 cut(s) 70, 86, 262
ScrFI CCNGG 2 cut(s) 227, 456
SduI GDGCHC 1 cut(s) 762
SfcI CTRYAG 3 cut(s) 153, 609, 775
SinI GGWCC 1 cut(s) 24
Sse9I AATT 2 cut(s) 336, 672
SsiI CCGC 2 cut(s) 262, 765
SspMI CTAG 3 cut(s) 365, 396, 711
StyD4I CCNGG 2 cut(s) 225, 454
StyI CCWWGG 1 cut(s) 192
TaaI ACNGT 3 cut(s) 170, 350, 485
TaiI ACGT 1 cut(s) 301
TasI AATT 2 cut(s) 336, 672
TatI WGTACW 1 cut(s) 398
TauI GCSGC 1 cut(s) 768
TfiI GAWTC 1 cut(s) 149
TscAI CASTG 2 cut(s) 162, 175
TseI GCWGC 2 cut(s) 230, 714
TspDTI ATGAA 3 cut(s) 120, 276, 636
TspGWI ACGGA 2 cut(s) 293, 735
TspRI CASTG 2 cut(s) 162, 175
VpaK11BI GGWCC 1 cut(s) 24
XspI CTAG 3 cut(s) 365, 396, 711
ZraI GACGTC 1 cut(s) 299
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.