Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0001099

Physical Location & Seq

Genomic Coordinates Forward (+)

64003091 .. 64007311

Gene Structure 4221 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00128310.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGAGTGAAGAGAGTCCGGCTAATCCGGTTGATGGGCCTAACACTTCTTCATTTACCGCATTTCTCTACTCATCGTTACCGTCATCAAAGTCGGGAGATAAGAGTAAAAGTTCTAATGAACAAGTTGATGAGCAAATGGATAAGAACAACTCATCGTCCGATTCTCGCATTGAAAGTTGTTGGAGAGACCATAAAGGTGCAGTGTTTGGTGGCTTAGTGGAGGCATCTTTAAGATCAACCAACAAGAAGTATCAGCTAGTGAGCCTTGTGCTTCCGATACTTGTGCACGAGAGGTATCTATACCAACAAGTCCCCCAAGTCCCCGGTCAAGAGTTCTCTTGGGTGGGGAGTTTGTCCATGGTAAAAGTATCGGAAGTGTGTAAGATGAGTATCCTTGACACGTGGCTTCCGTACAACCATTACCCCCCCCCCAAGTCCCCGGCTAAGAGGAGTCTTGCCGGGCTGGTGATTTCATTTTCCAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TLD

Protein Analysis

161

Amino Acids

17.82

Weight (kDa)

7.75

Isoelectric Point (pI)

72.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001099)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39870 AT4G39870
fragaria_vesca	FvH4_1g20920 FvH4_1g20920 FvH4_1g20920 FvH4_1g20920 FvH4_1g20920 FvH4_1g20920 FvH4_1g20920
malus_domestica	MD15G1324300.v1.1
prunus_persica	Prupe.6G186700_v2.0.a1 Prupe.6G186700_v2.0.a1 Prupe.6G186700_v2.0.a1
pyrus_communis	pycom15g28620
rosa_chinensis	RchiOBHm_Chr2g0113781 RchiOBHm_Chr2g0113881 RchiOBHm_Chr2g0113891 RchiOBHm_Chr2g0113971 RchiOBHm_Chr2g0114361 RchiOBHm_Chr2g0114391
rosa_laevigata	RLG00000018083 RLG00000018090 RLG00000018093 RLG00000018098
rosa_multiflora	Rmu_sc0000431.1_g000017 Rmu_sc0000431.1_g000031 Rmu_sc0000881.1_g000009 Rmu_sc0009639.1_g000003 Rmu_sc0010543.1_g000005 Rmu_sc0016457.1_g000001
rosa_roxburghii	Rroxscaffold_2G00128310 Rroxscaffold_2G00130120
rosa_rugosa	Rorug02G0188800 Rorug02G0189600 Rorug02G0190200
rosa_samantha	Rh1BG230200 Rh2CG248400 Rh2CG248700 Rh2CG249200 Rh2CG250600 Rh2CG250800 Rh2DG250900 Rh2DG251100 Rh2DG251600 Rh2DG251700 Rh2DG251800 Rh2DG252300 Rh2DG252700 Rh2DG253900 Rh2DG254000 Rh2DG254500 Rh2DG255100
rosa_wichuraiana	Rw2G018480 Rw2G019000 Rw2G019070 Rw2G019140 Rw2G019170 Rw2G019210 Rw6G015390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	57
AcvI	CACGTG	1 cut(s)	402
AfaI	GTAC	1 cut(s)	413
AfiI	CCNNNNNNNGG	1 cut(s)	32
AflIII	ACRYGT	1 cut(s)	399
AgsI	TTSAA	1 cut(s)	173
AluBI	AGCT	1 cut(s)	256
AluI	AGCT	1 cut(s)	256
Alw21I	GWGCWC	1 cut(s)	288
Alw26I	GTCTC	1 cut(s)	180
Alw44I	GTGCAC	1 cut(s)	284
AoxI	GGCC	1 cut(s)	35
ApaLI	GTGCAC	1 cut(s)	284
AspS9I	GGNCC	1 cut(s)	35
AsuC2I	CCSGG	3 cut(s)	324, 440, 460
AsuHPI	GGTGA	1 cut(s)	478
BaeGI	GKGCMC	1 cut(s)	288
BauI	CACGAG	1 cut(s)	287
BbrPI	CACGTG	1 cut(s)	402
Bbv12I	GWGCWC	1 cut(s)	288
BccI	CCATC	1 cut(s)	26
BcgI	CGANNNNNNTGC	2 cut(s)	265, 299
BciVI	GTATCC	1 cut(s)	401
BcnI	CCSGG	3 cut(s)	324, 440, 460
BcoDI	GTCTC	1 cut(s)	180
BfaI	CTAG	1 cut(s)	257
BfuI	GTATCC	1 cut(s)	401
Bme1390I	CCNGG	3 cut(s)	324, 440, 460
BmgT120I	GGNCC	1 cut(s)	35
BmrFI	CCNGG	3 cut(s)	324, 440, 460
BmsI	GCATC	1 cut(s)	233
BpuMI	CCSGG	3 cut(s)	324, 440, 460
BsaAI	YACGTR	1 cut(s)	402
BsaBI	GATNNNNATC	1 cut(s)	389
BsaI	GGTCTC	1 cut(s)	180
BsaJI	CCNNGG	3 cut(s)	322, 357, 438
BsaWI	WCCGGW	1 cut(s)	25
Bsc4I	CCNNNNNNNGG	1 cut(s)	32
Bse8I	GATNNNNATC	1 cut(s)	389
BseDI	CCNNGG	3 cut(s)	322, 357, 438
BseJI	GATNNNNATC	1 cut(s)	389
BseLI	CCNNNNNNNGG	1 cut(s)	32
BseRI	GAGGAG	1 cut(s)	463
BseSI	GKGCMC	1 cut(s)	288
BsgI	GTGCAG	1 cut(s)	219
BshFI	GGCC	1 cut(s)	37
BsiHKAI	GWGCWC	1 cut(s)	288
BsiSI	CCGG	5 cut(s)	17, 26, 324, 440, 459
BslFI	GGGAC	3 cut(s)	296, 305, 421
BslI	CCNNNNNNNGG	1 cut(s)	32
BsmAI	GTCTC	1 cut(s)	180
BsmFI	GGGAC	3 cut(s)	296, 305, 421
BsnI	GGCC	1 cut(s)	37
Bso31I	GGTCTC	1 cut(s)	180
Bsp1286I	GDGCHC	1 cut(s)	288
Bsp143I	GATC	1 cut(s)	233
Bsp19I	CCATGG	1 cut(s)	357
BspACI	CCGC	1 cut(s)	57
BspANI	GGCC	1 cut(s)	37
BspTNI	GGTCTC	1 cut(s)	180
BssECI	CCNNGG	3 cut(s)	322, 357, 438
BssMI	GATC	1 cut(s)	233
BssSI	CACGAG	1 cut(s)	287
BssT1I	CCWWGG	1 cut(s)	357
Bst2BI	CACGAG	1 cut(s)	287
Bst4CI	ACNGT	1 cut(s)	81
Bst6I	CTCTTC	1 cut(s)	3
BstBAI	YACGTR	1 cut(s)	402
BstDEI	CTNAG	2 cut(s)	214, 444
BstDSI	CCRYGG	1 cut(s)	357
BstKTI	GATC	1 cut(s)	236
BstMAI	GTCTC	1 cut(s)	180
BstMBI	GATC	1 cut(s)	233
BstSCI	CCNGG	3 cut(s)	322, 438, 458
BstSLI	GKGCMC	1 cut(s)	288
BsuI	GTATCC	1 cut(s)	401
BsuRI	GGCC	1 cut(s)	37
BtgI	CCRYGG	1 cut(s)	357
BtsI	GCAGTG	1 cut(s)	207
BtsIMutI	CAGTG	1 cut(s)	207
Cfr13I	GGNCC	1 cut(s)	35
Csp6I	GTAC	1 cut(s)	412
CviAII	CATG	1 cut(s)	358
CviJI	RGCY	8 cut(s)	20, 37, 213, 256, 264, 406, 443, 463
CviKI_1	RGCY	8 cut(s)	20, 37, 213, 256, 264, 406, 443, 463
CviQI	GTAC	1 cut(s)	412
DdeI	CTNAG	2 cut(s)	214, 444
DpnI	GATC	1 cut(s)	235
DpnII	GATC	1 cut(s)	233
Eam1104I	CTCTTC	1 cut(s)	3
EarI	CTCTTC	1 cut(s)	3
Eco130I	CCWWGG	1 cut(s)	357
Eco31I	GGTCTC	1 cut(s)	180
Eco72I	CACGTG	1 cut(s)	402
EcoT14I	CCWWGG	1 cut(s)	357
ErhI	CCWWGG	1 cut(s)	357
FaeI	CATG	1 cut(s)	361
FaiI	YATR	3 cut(s)	192, 301, 359
FaqI	GGGAC	3 cut(s)	296, 305, 421
FatI	CATG	1 cut(s)	357
FspBI	CTAG	1 cut(s)	257
HaeIII	GGCC	1 cut(s)	37
HapII	CCGG	5 cut(s)	17, 26, 324, 440, 459
Hin1II	CATG	1 cut(s)	361
HinfI	GANTC	3 cut(s)	13, 161, 451
HpaII	CCGG	5 cut(s)	17, 26, 324, 440, 459
HphI	GGTGA	1 cut(s)	478
Hpy166II	GTNNAC	1 cut(s)	286
Hpy188I	TCNGA	3 cut(s)	160, 276, 373
Hpy188III	TCNNGA	2 cut(s)	93, 329
Hpy8I	GTNNAC	1 cut(s)	286
HpyCH4III	ACNGT	1 cut(s)	81
HpyCH4IV	ACGT	1 cut(s)	401
HpyCH4V	TGCA	2 cut(s)	200, 286
HpyF3I	CTNAG	2 cut(s)	214, 444
HpySE526I	ACGT	1 cut(s)	401
Hsp92II	CATG	1 cut(s)	361
Kzo9I	GATC	1 cut(s)	233
LpnPI	CCDG	6 cut(s)	30, 39, 337, 449, 453, 472
LweI	GCATC	1 cut(s)	233
MaeI	CTAG	1 cut(s)	257
MaeII	ACGT	1 cut(s)	401
MaeIII	GTNAC	1 cut(s)	75
MalI	GATC	1 cut(s)	235
MboI	GATC	1 cut(s)	233
MboII	GAAGA	2 cut(s)	20, 39
MhlI	GDGCHC	1 cut(s)	288
MlyI	GAGTC	2 cut(s)	22, 460
MmeI	TCCRAC	1 cut(s)	161
MnlI	CCTC	3 cut(s)	214, 285, 441
MseI	TTAA	1 cut(s)	230
MslI	CAYNNNNRTG	1 cut(s)	195
MspI	CCGG	5 cut(s)	17, 26, 324, 440, 459
MspR9I	CCNGG	3 cut(s)	324, 440, 460
NciI	CCSGG	3 cut(s)	324, 440, 460
NcoI	CCATGG	1 cut(s)	357
NdeII	GATC	1 cut(s)	233
NlaIII	CATG	1 cut(s)	361
PcsI	WCGNNNNNNNCGW	1 cut(s)	407
PfeI	GAWTC	1 cut(s)	161
PleI	GAGTC	2 cut(s)	21, 459
PmaCI	CACGTG	1 cut(s)	402
PmlI	CACGTG	1 cut(s)	402
PpsI	GAGTC	2 cut(s)	21, 459
Ppu21I	YACGTR	1 cut(s)	402
PspCI	CACGTG	1 cut(s)	402
PspPI	GGNCC	1 cut(s)	35
RsaI	GTAC	1 cut(s)	413
RsaNI	GTAC	1 cut(s)	412
RseI	CAYNNNNRTG	1 cut(s)	195
SaqAI	TTAA	1 cut(s)	230
Sau3AI	GATC	1 cut(s)	233
Sau96I	GGNCC	1 cut(s)	35
SchI	GAGTC	2 cut(s)	22, 460
ScrFI	CCNGG	3 cut(s)	324, 440, 460
SduI	GDGCHC	1 cut(s)	288
SetI	ASST	4 cut(s)	199, 258, 296, 404
SfaNI	GCATC	1 cut(s)	233
SmiMI	CAYNNNNRTG	1 cut(s)	195
SsiI	CCGC	1 cut(s)	57
SspMI	CTAG	1 cut(s)	257
StyD4I	CCNGG	3 cut(s)	322, 438, 458
StyI	CCWWGG	1 cut(s)	357
TaaI	ACNGT	1 cut(s)	81
TaiI	ACGT	1 cut(s)	404
TfiI	GAWTC	1 cut(s)	161
Tru1I	TTAA	1 cut(s)	230
Tru9I	TTAA	1 cut(s)	230
TscAI	CASTG	1 cut(s)	207
TspDTI	ATGAA	3 cut(s)	39, 132, 462
TspGWI	ACGGA	1 cut(s)	399
TspRI	CASTG	1 cut(s)	207
VneI	GTGCAC	1 cut(s)	284
XspI	CTAG	1 cut(s)	257

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.