Rroxscaffold_2G00130120

Oxidation resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0001099
Physical Location & Seq
Reverse (-)
66257884 .. 66261746
3863 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00130120.1

Sequence Viewer

Length: 1128 bp
ATGGGTAGGCCAAGGAGTCTTCGCAGCAAAGCGGCCCACTTTGTGACTGATATCACTACTGGATTGCTCAACCCCATTTCTGACAAACCCTCCAAACCCTCTTCTTCTCCTCCTCCTCAGGAAGATGTGGACGGGTCCAGAGGAAGTCAAAATGGAACAATGAGTGAAGAGAGTCCAGCTAATCCAGTTGATGGGCCTGACACTTCTTCATTTACTGCATTTCTCTACTCACTGTTATCGTCATCAGAGTCGGGAGATAAGAGCAAAAGTTCGGATGAACAGGTTGATGACCAAATGGATAAGAGCAACTCATTATCTGATTCTGCAGTGAAAGCAAACTGTGGGAAGAGAAGCTTGTTTTCCAAGGGGAAACACACGCTTAGTAAAGCTATGTACCAGGCTGCAAGATTTGGTGGGTATCGGAGTCAAGAGCGGAAGGGTAACCTTGATGTGAAAGGTGATGATGGGAATGACTCTGAGTTTACTGGAGTTGAGATGAGGCATATGCATAAAGCACAGAAGCCTGTGGCTCTGGTTCATCTACCAGACGTCTCCGAACCTTCTTTACTTCTTACTGAGAAAAATAGAATTGCTCTTTACAGTTCACTCCCAGCGCTATACATGGAGGCATGGCATATCACTTTCAACCCTATACAGAAGAAGTATGCTTTGGCCTGGCCTCAGTTTGCTGGTAATAGCTCAGAAACTGTTGTTGGAGACCGTAAAGGTGCAGTTTTTGGTGGCTTGGTGGAGGCACCTCTAAGACCAACCAACAAGAAGTATCAGGGAACAAATGATACATTTGTTTTCACAAATACACCTGACCATCCTGTTATATATCGCCCTACAGGTGAAAATTTGATTGTATCCTGTGCCAACCGCTATTTCACATTGTGCGCTACTGACTTTTTAGCTATTGGTGGGGGTGGTCATTTTGCACTCTATTTGAACAGTGATCTATTGAGTGGATCAAGTTCAGTTTCAGAAACCTATGGGAATCCATGTCTTGCAAACTCAGAAGACTTTGATGTGAAAGAAGTAGAGTTATGGGGTTTTGTTTATGCTACTAAGTATGAGGAAGTACTTGCTCAAAGCCGTATGGAGGCACCTGGGATTTGCCGATGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TLD

Protein Analysis

375

Amino Acids

40.9

Weight (kDa)

5.81

Isoelectric Point (pI)

47.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TLD PF07534 185 - 352 3.9e-26 TLDc domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 552
AccB1I GGYRCC 2 cut(s) 754, 1105
AccB7I CCANNNNNTGG 1 cut(s) 191
AccBSI CCGCTC 1 cut(s) 433
AciI CCGC 3 cut(s) 32, 433, 880
AclWI GGATC 1 cut(s) 976
AcsI RAATTY 1 cut(s) 856
AcyI GRCGYC 1 cut(s) 549
AdeI CACNNNGTG 2 cut(s) 43, 894
AfaI GTAC 2 cut(s) 395, 1083
AfeI AGCGCT 1 cut(s) 615
AfiI CCNNNNNNNGG 2 cut(s) 191, 1102
AgsI TTSAA 2 cut(s) 646, 949
AjnI CCWGG 3 cut(s) 396, 674, 1108
AjuI GAANNNNNNNTTGG 6 cut(s) 653, 685, 696, 728, 869, 901
AluBI AGCT 5 cut(s) 179, 354, 389, 699, 914
AluI AGCT 5 cut(s) 179, 354, 389, 699, 914
Alw26I GTCTC 2 cut(s) 556, 711
AlwI GGATC 1 cut(s) 976
AlwNI CAGNNNCTG 1 cut(s) 707
Aor51HI AGCGCT 1 cut(s) 615
AoxI GGCC 5 cut(s) 8, 33, 194, 672, 677
ApeKI GCWGC 2 cut(s) 24, 401
ApoI RAATTY 1 cut(s) 856
AspLEI GCGC 2 cut(s) 616, 899
AspS9I GGNCC 3 cut(s) 34, 135, 194
AsuHPI GGTGA 2 cut(s) 470, 863
AvaII GGWCC 1 cut(s) 135
AxyI CCTNAGG 1 cut(s) 117
BaeI ACNNNNGTAYC 2 cut(s) 789, 822
BanI GGYRCC 2 cut(s) 754, 1105
BbsI GAAGAC 2 cut(s) 11, 1026
BbvI GCAGC 2 cut(s) 36, 388
BccI CCATC 4 cut(s) 185, 458, 834, 1116
BceAI ACGGC 1 cut(s) 1080
BciT130I CCWGG 3 cut(s) 398, 676, 1110
BciVI GTATCC 1 cut(s) 877
BcoDI GTCTC 2 cut(s) 556, 711
BfmI CTRYAG 2 cut(s) 324, 846
BfoI RGCGCY 1 cut(s) 617
BfuI GTATCC 1 cut(s) 877
BisI GCNGC 3 cut(s) 25, 33, 402
BlsI GCNGC 3 cut(s) 26, 34, 403
BmcAI AGTACT 1 cut(s) 1083
Bme1390I CCNGG 3 cut(s) 398, 676, 1110
Bme18I GGWCC 1 cut(s) 135
BmgT120I GGNCC 3 cut(s) 34, 135, 194
BmiI GGNNCC 3 cut(s) 136, 756, 1107
BmrFI CCNGG 3 cut(s) 398, 676, 1110
BpiI GAAGAC 2 cut(s) 11, 1026
BpmI CTGGAG 1 cut(s) 507
BsaHI GRCGYC 1 cut(s) 549
BsaI GGTCTC 1 cut(s) 711
BsaJI CCNNGG 3 cut(s) 11, 363, 1109
BsaXI ACNNNNNCTCC 2 cut(s) 74, 104
Bsc4I CCNNNNNNNGG 2 cut(s) 191, 1102
Bse1I ACTGG 3 cut(s) 64, 185, 490
Bse21I CCTNAGG 1 cut(s) 117
BseBI CCWGG 3 cut(s) 398, 676, 1110
BseDI CCNNGG 3 cut(s) 11, 363, 1109
BseGI GGATG 2 cut(s) 280, 826
BseLI CCNNNNNNNGG 2 cut(s) 191, 1102
BseMII CTCAG 6 cut(s) 131, 468, 567, 695, 714, 1029
BseNI ACTGG 3 cut(s) 64, 185, 490
BseRI GAGGAG 3 cut(s) 99, 102, 105
BseXI GCAGC 2 cut(s) 36, 388
BseYI CCCAGC 1 cut(s) 610
BsgI GTGCAG 1 cut(s) 750
BshFI GGCC 5 cut(s) 10, 35, 196, 674, 679
BshNI GGYRCC 2 cut(s) 754, 1105
BslI CCNNNNNNNGG 2 cut(s) 191, 1102
BsmAI GTCTC 2 cut(s) 556, 711
BsmBI CGTCTC 1 cut(s) 556
BsnI GGCC 5 cut(s) 10, 35, 196, 674, 679
Bso31I GGTCTC 1 cut(s) 711
Bsp143I GATC 2 cut(s) 955, 968
BspACI CCGC 3 cut(s) 32, 433, 880
BspANI GGCC 5 cut(s) 10, 35, 196, 674, 679
BspCNI CTCAG 6 cut(s) 130, 469, 568, 694, 713, 1028
BspLI GGNNCC 3 cut(s) 136, 756, 1107
BspMAI CTGCAG 1 cut(s) 328
BspPI GGATC 1 cut(s) 976
BspT107I GGYRCC 2 cut(s) 754, 1105
BspTNI GGTCTC 1 cut(s) 711
BsrBI CCGCTC 1 cut(s) 433
BsrI ACTGG 3 cut(s) 64, 185, 490
BssECI CCNNGG 3 cut(s) 11, 363, 1109
BssMI GATC 2 cut(s) 955, 968
BssNI GRCGYC 1 cut(s) 549
BssT1I CCWWGG 2 cut(s) 11, 363
Bst2UI CCWGG 3 cut(s) 398, 676, 1110
Bst4CI ACNGT 6 cut(s) 234, 341, 602, 709, 722, 953
Bst6I CTCTTC 3 cut(s) 106, 162, 341
BstACI GRCGYC 1 cut(s) 549
BstDEI CTNAG 9 cut(s) 117, 380, 477, 576, 681, 700, 761, 1015, 1068
BstEII GGTNACC 1 cut(s) 440
BstF5I GGATG 2 cut(s) 280, 826
BstH2I RGCGCY 1 cut(s) 617
BstHHI GCGC 2 cut(s) 616, 899
BstKTI GATC 2 cut(s) 958, 971
BstMAI GTCTC 2 cut(s) 556, 711
BstMBI GATC 2 cut(s) 955, 968
BstMWI GCNNNNNNNGC 1 cut(s) 332
BstNI CCWGG 3 cut(s) 398, 676, 1110
BstPI GGTNACC 1 cut(s) 440
BstSCI CCNGG 3 cut(s) 396, 674, 1108
BstSFI CTRYAG 2 cut(s) 324, 846
BstV1I GCAGC 2 cut(s) 36, 388
BstV2I GAAGAC 2 cut(s) 11, 1026
Bsu36I CCTNAGG 1 cut(s) 117
BsuI GTATCC 1 cut(s) 877
BsuRI GGCC 5 cut(s) 10, 35, 196, 674, 679
BtsCI GGATG 2 cut(s) 280, 826
BtsI GCAGTG 1 cut(s) 333
BtsIMutI CAGTG 3 cut(s) 230, 333, 958
CaiI CAGNNNCTG 1 cut(s) 707
CfoI GCGC 2 cut(s) 616, 899
Cfr13I GGNCC 3 cut(s) 34, 135, 194
Csp6I GTAC 2 cut(s) 394, 1082
CviAII CATG 3 cut(s) 622, 630, 1002
CviQI GTAC 2 cut(s) 394, 1082
DdeI CTNAG 9 cut(s) 117, 380, 477, 576, 681, 700, 761, 1015, 1068
DpnI GATC 2 cut(s) 957, 970
DpnII GATC 2 cut(s) 955, 968
DraIII CACNNNGTG 2 cut(s) 43, 894
Eam1104I CTCTTC 3 cut(s) 106, 162, 341
EarI CTCTTC 3 cut(s) 106, 162, 341
Eco130I CCWWGG 2 cut(s) 11, 363
Eco31I GGTCTC 1 cut(s) 711
Eco32I GATATC 1 cut(s) 52
Eco47I GGWCC 1 cut(s) 135
Eco47III AGCGCT 1 cut(s) 615
Eco81I CCTNAGG 1 cut(s) 117
Eco91I GGTNACC 1 cut(s) 440
EcoO65I GGTNACC 1 cut(s) 440
EcoRII CCWGG 3 cut(s) 396, 674, 1108
EcoRV GATATC 1 cut(s) 52
EcoT14I CCWWGG 2 cut(s) 11, 363
EcoT22I ATGCAT 1 cut(s) 510
ErhI CCWWGG 2 cut(s) 11, 363
Esp3I CGTCTC 1 cut(s) 556
FaeI CATG 3 cut(s) 625, 633, 1005
FalI AAGNNNNNCTT 2 cut(s) 338, 370
FatI CATG 3 cut(s) 621, 629, 1001
FauNDI CATATG 1 cut(s) 504
Fnu4HI GCNGC 3 cut(s) 25, 33, 402
FokI GGATG 2 cut(s) 287, 813
Fsp4HI GCNGC 3 cut(s) 25, 33, 402
GlaI GCGC 2 cut(s) 615, 898
GluI GCNGC 3 cut(s) 25, 33, 402
GsaI CCCAGC 1 cut(s) 614
GsuI CTGGAG 1 cut(s) 507
HaeII RGCGCY 1 cut(s) 617
HaeIII GGCC 5 cut(s) 10, 35, 196, 674, 679
HhaI GCGC 2 cut(s) 616, 899
Hin1I GRCGYC 1 cut(s) 549
Hin1II CATG 3 cut(s) 625, 633, 1005
Hin6I GCGC 2 cut(s) 614, 897
HinP1I GCGC 2 cut(s) 614, 897
HindIII AAGCTT 1 cut(s) 352
HinfI GANTC 7 cut(s) 16, 172, 248, 320, 424, 473, 997
HphI GGTGA 2 cut(s) 470, 863
Hpy166II GTNNAC 3 cut(s) 130, 483, 605
Hpy188III TCNNGA 4 cut(s) 119, 138, 252, 428
Hpy8I GTNNAC 3 cut(s) 130, 483, 605
HpyAV CCTTC 2 cut(s) 430, 570
HpyCH4III ACNGT 6 cut(s) 234, 341, 602, 709, 722, 953
HpyCH4IV ACGT 1 cut(s) 549
HpyCH4V TGCA 7 cut(s) 218, 326, 404, 508, 731, 938, 1010
HpyF10VI GCNNNNNNNGC 1 cut(s) 332
HpyF3I CTNAG 9 cut(s) 117, 380, 477, 576, 681, 700, 761, 1015, 1068
HpySE526I ACGT 1 cut(s) 549
Hsp92I GRCGYC 1 cut(s) 549
Hsp92II CATG 3 cut(s) 625, 633, 1005
HspAI GCGC 2 cut(s) 614, 897
Kzo9I GATC 2 cut(s) 955, 968
Lsp1109I GCAGC 2 cut(s) 36, 388
MaeII ACGT 1 cut(s) 549
MaeIII GTNAC 2 cut(s) 43, 440
MalI GATC 2 cut(s) 957, 970
MbiI CCGCTC 1 cut(s) 433
MboI GATC 2 cut(s) 955, 968
MboII GAAGA 9 cut(s) 11, 93, 96, 134, 179, 198, 358, 670, 1031
MluCI AATT 2 cut(s) 588, 856
MlyI GAGTC 5 cut(s) 25, 181, 257, 433, 467
MmeI TCCRAC 1 cut(s) 694
Mph1103I ATGCAT 1 cut(s) 510
MspR9I CCNGG 3 cut(s) 398, 676, 1110
MvaI CCWGG 3 cut(s) 398, 676, 1110
MwoI GCNNNNNNNGC 1 cut(s) 332
NdeI CATATG 1 cut(s) 504
NdeII GATC 2 cut(s) 955, 968
NlaIII CATG 3 cut(s) 625, 633, 1005
NlaIV GGNNCC 3 cut(s) 136, 756, 1107
NmuCI GTSAC 1 cut(s) 43
NsiI ATGCAT 1 cut(s) 510
PfeI GAWTC 2 cut(s) 320, 997
PflMI CCANNNNNTGG 1 cut(s) 191
PkrI GCNGC 3 cut(s) 26, 34, 403
PleI GAGTC 5 cut(s) 24, 180, 256, 432, 467
PpsI GAGTC 5 cut(s) 24, 180, 256, 432, 467
Psp6I CCWGG 3 cut(s) 396, 674, 1108
PspEI GGTNACC 1 cut(s) 440
PspFI CCCAGC 1 cut(s) 610
PspGI CCWGG 3 cut(s) 396, 674, 1108
PspN4I GGNNCC 3 cut(s) 136, 756, 1107
PspPI GGNCC 3 cut(s) 34, 135, 194
PsrI GAACNNNNNNTAC 4 cut(s) 549, 581, 781, 813
PstI CTGCAG 1 cut(s) 328
PstNI CAGNNNCTG 1 cut(s) 707
RsaI GTAC 2 cut(s) 395, 1083
RsaNI GTAC 2 cut(s) 394, 1082
SatI GCNGC 3 cut(s) 25, 33, 402
Sau3AI GATC 2 cut(s) 955, 968
Sau96I GGNCC 3 cut(s) 34, 135, 194
ScaI AGTACT 1 cut(s) 1083
SchI GAGTC 5 cut(s) 25, 181, 257, 433, 467
ScrFI CCNGG 3 cut(s) 398, 676, 1110
SfcI CTRYAG 2 cut(s) 324, 846
SinI GGWCC 1 cut(s) 135
Sse9I AATT 2 cut(s) 588, 856
SsiI CCGC 3 cut(s) 32, 433, 880
StyD4I CCNGG 3 cut(s) 396, 674, 1108
StyI CCWWGG 2 cut(s) 11, 363
TaaI ACNGT 6 cut(s) 234, 341, 602, 709, 722, 953
TaiI ACGT 1 cut(s) 552
TasI AATT 2 cut(s) 588, 856
TatI WGTACW 1 cut(s) 1081
TauI GCSGC 1 cut(s) 35
TfiI GAWTC 2 cut(s) 320, 997
TscAI CASTG 3 cut(s) 237, 333, 958
TseFI GTSAC 1 cut(s) 43
TseI GCWGC 2 cut(s) 24, 401
Tsp45I GTSAC 1 cut(s) 43
TspDTI ATGAA 3 cut(s) 198, 291, 527
TspRI CASTG 3 cut(s) 237, 333, 958
Van91I CCANNNNNTGG 1 cut(s) 191
VpaK11BI GGWCC 1 cut(s) 135
XapI RAATTY 1 cut(s) 856
ZraI GACGTC 1 cut(s) 550
ZrmI AGTACT 1 cut(s) 1083
Zsp2I ATGCAT 1 cut(s) 510
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.