Rh2DG251800

Oxidation resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0001099
Physical Location & Seq
Reverse (-)
26078910 .. 26079173
264 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG251800.1

Sequence Viewer

Length: 264 bp
ATGGATAAGCCCGACTCGTTGTCTGATTCTGCAGTGAAAGCAAACAGTGGGAAGAGAAGCTTGTTTTCCAGGGGGAAACACACGCTTAGTAAAGCTATATACCAGCCTGCAAGATTTGGTGGGTATCGGAGTCAAGAGCGGAAGGGTAACCTTGATGTGAAAGGTGATGATGGGAATGACTCTGAGTTTACTGGAGTTGGGATGAGGCATATGCATAAAGCACAGAAGCCTGTGGCCTTGGTTCATTTGCCAGACATCTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TLD

Protein Analysis

87

Amino Acids

9.53

Weight (kDa)

9.75

Isoelectric Point (pI)

42.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 139
AciI CCGC 1 cut(s) 139
AhdI GACNNNNNGTC 1 cut(s) 19
AjnI CCWGG 1 cut(s) 68
AluBI AGCT 2 cut(s) 60, 95
AluI AGCT 2 cut(s) 60, 95
AoxI GGCC 1 cut(s) 234
AsuHPI GGTGA 1 cut(s) 176
BccI CCATC 1 cut(s) 164
BciT130I CCWGG 1 cut(s) 70
BfmI CTRYAG 1 cut(s) 30
Bme1390I CCNGG 1 cut(s) 70
BmeRI GACNNNNNGTC 1 cut(s) 19
BmrFI CCNGG 1 cut(s) 70
BpmI CTGGAG 1 cut(s) 213
BsaJI CCNNGG 2 cut(s) 69, 237
Bse1I ACTGG 1 cut(s) 196
BseBI CCWGG 1 cut(s) 70
BseDI CCNNGG 2 cut(s) 69, 237
BseGI GGATG 1 cut(s) 207
BseMII CTCAG 1 cut(s) 174
BseNI ACTGG 1 cut(s) 196
BshFI GGCC 1 cut(s) 236
BsnI GGCC 1 cut(s) 236
BspACI CCGC 1 cut(s) 139
BspANI GGCC 1 cut(s) 236
BspCNI CTCAG 1 cut(s) 175
BspMAI CTGCAG 1 cut(s) 34
BsrBI CCGCTC 1 cut(s) 139
BsrI ACTGG 1 cut(s) 196
BssECI CCNNGG 2 cut(s) 69, 237
BssT1I CCWWGG 1 cut(s) 237
Bst2UI CCWGG 1 cut(s) 70
Bst4CI ACNGT 1 cut(s) 47
Bst6I CTCTTC 1 cut(s) 47
BstC8I GCNNGC 1 cut(s) 108
BstDEI CTNAG 2 cut(s) 86, 183
BstEII GGTNACC 1 cut(s) 146
BstF5I GGATG 1 cut(s) 207
BstMWI GCNNNNNNNGC 1 cut(s) 38
BstNI CCWGG 1 cut(s) 70
BstPI GGTNACC 1 cut(s) 146
BstSCI CCNGG 1 cut(s) 68
BstSFI CTRYAG 1 cut(s) 30
BsuRI GGCC 1 cut(s) 236
BtsCI GGATG 1 cut(s) 207
BtsI GCAGTG 1 cut(s) 39
BtsIMutI CAGTG 2 cut(s) 39, 52
Cac8I GCNNGC 1 cut(s) 108
CviJI RGCY 6 cut(s) 10, 60, 95, 106, 229, 236
CviKI_1 RGCY 6 cut(s) 10, 60, 95, 106, 229, 236
DdeI CTNAG 2 cut(s) 86, 183
DriI GACNNNNNGTC 1 cut(s) 19
Eam1104I CTCTTC 1 cut(s) 47
Eam1105I GACNNNNNGTC 1 cut(s) 19
EarI CTCTTC 1 cut(s) 47
Eco130I CCWWGG 1 cut(s) 237
Eco91I GGTNACC 1 cut(s) 146
EcoO65I GGTNACC 1 cut(s) 146
EcoRII CCWGG 1 cut(s) 68
EcoT14I CCWWGG 1 cut(s) 237
EcoT22I ATGCAT 1 cut(s) 216
ErhI CCWWGG 1 cut(s) 237
FaiI YATR 5 cut(s) 98, 100, 210, 212, 216
FalI AAGNNNNNCTT 2 cut(s) 44, 76
FauNDI CATATG 1 cut(s) 210
FokI GGATG 1 cut(s) 214
GsuI CTGGAG 1 cut(s) 213
HaeIII GGCC 1 cut(s) 236
HindIII AAGCTT 1 cut(s) 58
HinfI GANTC 4 cut(s) 14, 26, 130, 179
HphI GGTGA 1 cut(s) 176
Hpy166II GTNNAC 1 cut(s) 189
Hpy188I TCNGA 3 cut(s) 25, 129, 184
Hpy188III TCNNGA 1 cut(s) 134
Hpy8I GTNNAC 1 cut(s) 189
HpyAV CCTTC 1 cut(s) 136
HpyCH4III ACNGT 1 cut(s) 47
HpyCH4V TGCA 3 cut(s) 32, 110, 214
HpyF10VI GCNNNNNNNGC 1 cut(s) 38
HpyF3I CTNAG 2 cut(s) 86, 183
LpnPI CCDG 6 cut(s) 55, 82, 116, 120, 177, 243
MaeIII GTNAC 1 cut(s) 146
MbiI CCGCTC 1 cut(s) 139
MboII GAAGA 1 cut(s) 64
MlyI GAGTC 3 cut(s) 8, 139, 173
MnlI CCTC 1 cut(s) 198
Mph1103I ATGCAT 1 cut(s) 216
MseI TTAA 1 cut(s) 262
MspR9I CCNGG 1 cut(s) 70
MvaI CCWGG 1 cut(s) 70
MwoI GCNNNNNNNGC 1 cut(s) 38
NdeI CATATG 1 cut(s) 210
NsiI ATGCAT 1 cut(s) 216
PfeI GAWTC 1 cut(s) 26
PleI GAGTC 3 cut(s) 8, 138, 173
PpsI GAGTC 3 cut(s) 8, 138, 173
Psp6I CCWGG 1 cut(s) 68
PspEI GGTNACC 1 cut(s) 146
PspGI CCWGG 1 cut(s) 68
PstI CTGCAG 1 cut(s) 34
SaqAI TTAA 1 cut(s) 262
SchI GAGTC 3 cut(s) 8, 139, 173
ScrFI CCNGG 1 cut(s) 70
SetI ASST 4 cut(s) 62, 97, 153, 166
SfcI CTRYAG 1 cut(s) 30
SsiI CCGC 1 cut(s) 139
StyD4I CCNGG 1 cut(s) 68
StyI CCWWGG 1 cut(s) 237
TaaI ACNGT 1 cut(s) 47
TfiI GAWTC 1 cut(s) 26
Tru1I TTAA 1 cut(s) 262
Tru9I TTAA 1 cut(s) 262
TscAI CASTG 2 cut(s) 39, 52
TspDTI ATGAA 1 cut(s) 233
TspRI CASTG 2 cut(s) 39, 52
Zsp2I ATGCAT 1 cut(s) 216
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.