MD15G1324300.v1.1

Oxidation resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0001099
Physical Location & Seq
Reverse (-)
34527727 .. 34531549
3823 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1324300.v1.1.491

Sequence Viewer

Length: 1137 bp
ATGTCAAAGGAACAGATGGGTAGGCCACGGTCGTTTCGGAGCAAGGCTGCTCACTTTGTATCTGATCTCACCACTGTCTTCCTCAACCCCATTTCTGACAAACCCTCCAAACCCTCTCCTCCTCCTCCTCTCTCTGAAGATGTGGATGACTCCAAAAGAAGTCAAAATGGATCAATCAGCGAAGAGAATCCCGCTAATGTTGTTGATGGGCCCGACACATCTTCCTTTAGTGCATTCCTCTACTCACTATTGTCGTCTTCAGAGTCTGGAGATACTAATAAAAATTCAGATGAGCAGATTGATGATCAGATGGATAGGAGCAACCCATCATCTGATTCCGCAATGAAAGGAAATGCTGGAAAGAAAAGTTTGCTTTCTAAGGGGAAACAGTCGCTTAGTAAAGTTATGTCCCAGGCTGCAAGATTTGGTGTGCATCGGAGTCAAGAACGCAAGGGTAACCCTGACATGAAAGTTGATGATGCAAATGATTCGAACTTCACTAGAGTTGAGATGAGGCCTATGCAGAAAGCCCCAACGCCTGTGCCTTTGGTTGATCACCCAGACATTTCTGAACCGTCTTTACTTCTTACAGAAATAACTAGAACTGCTCTTTACGCTTCAATGCCAGTGCTTGTTCAAGGACGGAAATGGTTGTTGCTGTATAGTACATGGAGGCATGGCATATCATTGTCAACCCTATACAGAAGAAGCATGCTTTGGCCGGGCCTCAGTTTGCTGGTTGTTGGAGACCGTAAAGATGCAGTTTTTGGCGGCTTGGTGGAGGCACCTCTTAGACCAACAAACAAGAAGTATCAGGGAACAAATGATACATTTGTTTTCACAAATACACCTGGCCATCCTGTTATATTTCGCCCTACAGGTGCAAATCGCTATTTCACATTGTGCTCCAATGACTTTTTAGCAATTGGCGGGGGTGGTCATTTTGCGCTATATTTGGACAGTGAGCTCTTGAGTGGATCAAGCTCATGCTCTGAAACCTATGGGAATCCTTGTCTTGCAAACTCAGAAGACTTTGAGGTGAAAGAAGTTGAGTTATGGGGCTTCGTATATGCTACCAAGTATGAGGAAGTACTTGCTCTAAGCCGTATGGAGTCACCTGGGATATGCCGTTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TLD

Protein Analysis

379

Amino Acids

41.66

Weight (kDa)

6.13

Isoelectric Point (pI)

47.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TLD PF07534 190 - 355 1.2e-39 TLDc domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 784
AciI CCGC 4 cut(s) 192, 339, 771, 930
AclWI GGATC 2 cut(s) 178, 985
AcoI YGGCCR 2 cut(s) 719, 853
AcsI RAATTY 1 cut(s) 283
AcuI CTGAAG 2 cut(s) 156, 243
AdeI CACNNNGTG 1 cut(s) 903
AfaI GTAC 2 cut(s) 667, 1092
AgsI TTSAA 2 cut(s) 621, 638
AjnI CCWGG 3 cut(s) 411, 850, 1117
AjuI GAANNNNNNNTTGG 2 cut(s) 700, 732
AluBI AGCT 2 cut(s) 967, 984
AluI AGCT 2 cut(s) 967, 984
Alw21I GWGCWC 2 cut(s) 908, 969
Alw26I GTCTC 1 cut(s) 741
AlwI GGATC 2 cut(s) 178, 985
AlwNI CAGNNNCTG 1 cut(s) 266
AoxI GGCC 6 cut(s) 23, 209, 515, 719, 724, 853
ApaI GGGCCC 1 cut(s) 213
ApeKI GCWGC 2 cut(s) 47, 416
ApoI RAATTY 1 cut(s) 283
AspLEI GCGC 1 cut(s) 949
AspS9I GGNCC 3 cut(s) 209, 210, 724
AsuC2I CCSGG 1 cut(s) 723
AsuHPI GGTGA 4 cut(s) 61, 548, 1051, 1107
AsuII TTCGAA 1 cut(s) 491
BaeGI GKGCMC 1 cut(s) 213
BaeI ACNNNNGTAYC 2 cut(s) 819, 852
BalI TGGCCA 1 cut(s) 855
BanI GGYRCC 1 cut(s) 784
BanII GRGCYC 2 cut(s) 213, 969
BbsI GAAGAC 3 cut(s) 70, 249, 1035
Bbv12I GWGCWC 2 cut(s) 908, 969
BbvI GCAGC 2 cut(s) 34, 403
BccI CCATC 5 cut(s) 10, 200, 304, 334, 864
BceAI ACGGC 2 cut(s) 1089, 1113
BcgI CGANNNNNNTGC 2 cut(s) 471, 505
BciT130I CCWGG 3 cut(s) 413, 852, 1119
BclI TGATCA 2 cut(s) 304, 553
BcnI CCSGG 1 cut(s) 723
BcoDI GTCTC 1 cut(s) 741
BfaI CTAG 2 cut(s) 501, 600
BfmI CTRYAG 1 cut(s) 876
BisI GCNGC 3 cut(s) 48, 417, 772
BlsI GCNGC 3 cut(s) 49, 418, 773
BmcAI AGTACT 1 cut(s) 1092
Bme1390I CCNGG 4 cut(s) 413, 723, 852, 1119
BmgT120I GGNCC 3 cut(s) 209, 210, 724
BmiI GGNNCC 2 cut(s) 211, 786
BmrFI CCNGG 4 cut(s) 413, 723, 852, 1119
BmsI GCATC 3 cut(s) 442, 469, 748
BpiI GAAGAC 3 cut(s) 70, 249, 1035
BpmI CTGGAG 1 cut(s) 288
Bpu14I TTCGAA 1 cut(s) 491
BpuEI CTTGAG 1 cut(s) 991
BpuMI CCSGG 1 cut(s) 723
BsaI GGTCTC 1 cut(s) 741
BsaJI CCNNGG 3 cut(s) 26, 411, 1118
BsaXI ACNNNNNCTCC 2 cut(s) 89, 119
Bse1I ACTGG 1 cut(s) 626
Bse3DI GCAATG 1 cut(s) 348
BseBI CCWGG 3 cut(s) 413, 852, 1119
BseDI CCNNGG 3 cut(s) 26, 411, 1118
BseGI GGATG 2 cut(s) 151, 856
BseMI GCAATG 1 cut(s) 348
BseMII CTCAG 2 cut(s) 742, 1038
BseNI ACTGG 1 cut(s) 626
BseRI GAGGAG 4 cut(s) 108, 111, 114, 117
BseSI GKGCMC 1 cut(s) 213
BseXI GCAGC 2 cut(s) 34, 403
Bsh1285I CGRYCG 1 cut(s) 32
BshFI GGCC 6 cut(s) 25, 211, 517, 721, 726, 855
BshNI GGYRCC 1 cut(s) 784
BsiEI CGRYCG 1 cut(s) 32
BsiHKAI GWGCWC 2 cut(s) 908, 969
BsiSI CCGG 1 cut(s) 722
BslFI GGGAC 1 cut(s) 394
BsmAI GTCTC 1 cut(s) 741
BsmFI GGGAC 1 cut(s) 394
BsmI GAATGC 1 cut(s) 233
BsnI GGCC 6 cut(s) 25, 211, 517, 721, 726, 855
Bso31I GGTCTC 1 cut(s) 741
Bsp119I TTCGAA 1 cut(s) 491
Bsp120I GGGCCC 1 cut(s) 209
Bsp1286I GDGCHC 3 cut(s) 213, 908, 969
Bsp143I GATC 5 cut(s) 64, 170, 304, 553, 977
BspACI CCGC 4 cut(s) 192, 339, 771, 930
BspANI GGCC 6 cut(s) 25, 211, 517, 721, 726, 855
BspCNI CTCAG 2 cut(s) 741, 1037
BspLI GGNNCC 2 cut(s) 211, 786
BspPI GGATC 2 cut(s) 178, 985
BspT104I TTCGAA 1 cut(s) 491
BspT107I GGYRCC 1 cut(s) 784
BspTNI GGTCTC 1 cut(s) 741
BsrDI GCAATG 1 cut(s) 348
BsrI ACTGG 1 cut(s) 626
BssECI CCNNGG 3 cut(s) 26, 411, 1118
BssMI GATC 5 cut(s) 64, 170, 304, 553, 977
Bst2UI CCWGG 3 cut(s) 413, 852, 1119
Bst4CI ACNGT 6 cut(s) 30, 76, 390, 576, 752, 962
Bst6I CTCTTC 1 cut(s) 177
BstBI TTCGAA 1 cut(s) 491
BstC8I GCNNGC 1 cut(s) 713
BstDEI CTNAG 6 cut(s) 378, 395, 728, 791, 1024, 1100
BstDSI CCRYGG 1 cut(s) 26
BstEII GGTNACC 1 cut(s) 455
BstF5I GGATG 2 cut(s) 151, 856
BstHHI GCGC 1 cut(s) 949
BstKTI GATC 5 cut(s) 67, 173, 307, 556, 980
BstMAI GTCTC 1 cut(s) 741
BstMBI GATC 5 cut(s) 64, 170, 304, 553, 977
BstMCI CGRYCG 1 cut(s) 32
BstMWI GCNNNNNNNGC 1 cut(s) 614
BstNI CCWGG 3 cut(s) 413, 852, 1119
BstNSI RCATGY 1 cut(s) 715
BstPI GGTNACC 1 cut(s) 455
BstSCI CCNGG 4 cut(s) 411, 721, 850, 1117
BstSFI CTRYAG 1 cut(s) 876
BstSLI GKGCMC 1 cut(s) 213
BstV1I GCAGC 2 cut(s) 34, 403
BstV2I GAAGAC 3 cut(s) 70, 249, 1035
BsuRI GGCC 6 cut(s) 25, 211, 517, 721, 726, 855
BtgI CCRYGG 1 cut(s) 26
BtsCI GGATG 2 cut(s) 151, 856
BtsIMutI CAGTG 3 cut(s) 72, 633, 967
Cac8I GCNNGC 1 cut(s) 713
CaiI CAGNNNCTG 1 cut(s) 266
CfoI GCGC 1 cut(s) 949
Cfr13I GGNCC 3 cut(s) 209, 210, 724
Csp6I GTAC 2 cut(s) 666, 1091
CviAII CATG 5 cut(s) 466, 669, 677, 712, 987
CviQI GTAC 2 cut(s) 666, 1091
DdeI CTNAG 6 cut(s) 378, 395, 728, 791, 1024, 1100
DpnI GATC 5 cut(s) 66, 172, 306, 555, 979
DpnII GATC 5 cut(s) 64, 170, 304, 553, 977
DraIII CACNNNGTG 1 cut(s) 903
EaeI YGGCCR 2 cut(s) 719, 853
Eam1104I CTCTTC 1 cut(s) 177
EarI CTCTTC 1 cut(s) 177
Ecl136II GAGCTC 1 cut(s) 967
Eco147I AGGCCT 1 cut(s) 517
Eco24I GRGCYC 2 cut(s) 213, 969
Eco31I GGTCTC 1 cut(s) 741
Eco53kI GAGCTC 1 cut(s) 967
Eco57I CTGAAG 2 cut(s) 156, 243
Eco91I GGTNACC 1 cut(s) 455
EcoICRI GAGCTC 1 cut(s) 967
EcoO65I GGTNACC 1 cut(s) 455
EcoRII CCWGG 3 cut(s) 411, 850, 1117
EcoT38I GRGCYC 2 cut(s) 213, 969
FaeI CATG 5 cut(s) 469, 672, 680, 715, 990
FaqI GGGAC 1 cut(s) 394
FatI CATG 5 cut(s) 465, 668, 676, 711, 986
FauI CCCGC 2 cut(s) 199, 923
FbaI TGATCA 2 cut(s) 304, 553
Fnu4HI GCNGC 3 cut(s) 48, 417, 772
FokI GGATG 2 cut(s) 158, 843
FriOI GRGCYC 2 cut(s) 213, 969
Fsp4HI GCNGC 3 cut(s) 48, 417, 772
FspBI CTAG 2 cut(s) 501, 600
GlaI GCGC 1 cut(s) 948
GluI GCNGC 3 cut(s) 48, 417, 772
GsuI CTGGAG 1 cut(s) 288
HaeIII GGCC 6 cut(s) 25, 211, 517, 721, 726, 855
HapII CCGG 1 cut(s) 722
HhaI GCGC 1 cut(s) 949
Hin1II CATG 5 cut(s) 469, 672, 680, 715, 990
Hin6I GCGC 1 cut(s) 947
HinP1I GCGC 1 cut(s) 947
HincII GTYRAC 1 cut(s) 693
HindII GTYRAC 1 cut(s) 693
HinfI GANTC 8 cut(s) 149, 187, 263, 335, 439, 488, 1006, 1112
HpaII CCGG 1 cut(s) 722
HphI GGTGA 4 cut(s) 61, 548, 1051, 1107
Hpy166II GTNNAC 1 cut(s) 693
Hpy188III TCNNGA 3 cut(s) 267, 443, 970
Hpy8I GTNNAC 1 cut(s) 693
HpyCH4III ACNGT 6 cut(s) 30, 76, 390, 576, 752, 962
HpyCH4V TGCA 8 cut(s) 233, 419, 433, 482, 523, 761, 884, 1019
HpyF10VI GCNNNNNNNGC 1 cut(s) 614
HpyF3I CTNAG 6 cut(s) 378, 395, 728, 791, 1024, 1100
Hsp92II CATG 5 cut(s) 469, 672, 680, 715, 990
HspAI GCGC 1 cut(s) 947
Ksp22I TGATCA 2 cut(s) 304, 553
Kzo9I GATC 5 cut(s) 64, 170, 304, 553, 977
LmnI GCTCC 3 cut(s) 39, 318, 911
Lsp1109I GCAGC 2 cut(s) 34, 403
LweI GCATC 3 cut(s) 442, 469, 748
MaeI CTAG 2 cut(s) 501, 600
MaeIII GTNAC 2 cut(s) 455, 1113
MalI GATC 5 cut(s) 66, 172, 306, 555, 979
MboI GATC 5 cut(s) 64, 170, 304, 553, 977
MboII GAAGA 7 cut(s) 70, 149, 194, 213, 249, 717, 1040
MfeI CAATTG 1 cut(s) 924
MhlI GDGCHC 3 cut(s) 213, 908, 969
MlsI TGGCCA 1 cut(s) 855
MluCI AATT 2 cut(s) 283, 924
MluNI TGGCCA 1 cut(s) 855
MlyI GAGTC 4 cut(s) 143, 272, 448, 1121
MmeI TCCRAC 1 cut(s) 724
Mox20I TGGCCA 1 cut(s) 855
MscI TGGCCA 1 cut(s) 855
Msp20I TGGCCA 1 cut(s) 855
MspI CCGG 1 cut(s) 722
MspR9I CCNGG 4 cut(s) 413, 723, 852, 1119
MunI CAATTG 1 cut(s) 924
Mva1269I GAATGC 1 cut(s) 233
MvaI CCWGG 3 cut(s) 413, 852, 1119
MwoI GCNNNNNNNGC 1 cut(s) 614
NciI CCSGG 1 cut(s) 723
NdeII GATC 5 cut(s) 64, 170, 304, 553, 977
NlaIII CATG 5 cut(s) 469, 672, 680, 715, 990
NlaIV GGNNCC 2 cut(s) 211, 786
NmuCI GTSAC 1 cut(s) 1113
NspI RCATGY 1 cut(s) 715
NspV TTCGAA 1 cut(s) 491
PaeI GCATGC 1 cut(s) 715
PceI AGGCCT 1 cut(s) 517
PctI GAATGC 1 cut(s) 233
PfeI GAWTC 4 cut(s) 187, 335, 488, 1006
PkrI GCNGC 3 cut(s) 49, 418, 773
PleI GAGTC 4 cut(s) 143, 271, 447, 1120
PpsI GAGTC 4 cut(s) 143, 271, 447, 1120
Psp124BI GAGCTC 1 cut(s) 969
Psp6I CCWGG 3 cut(s) 411, 850, 1117
PspEI GGTNACC 1 cut(s) 455
PspGI CCWGG 3 cut(s) 411, 850, 1117
PspN4I GGNNCC 2 cut(s) 211, 786
PspOMI GGGCCC 1 cut(s) 209
PspPI GGNCC 3 cut(s) 209, 210, 724
PsrI GAACNNNNNNTAC 4 cut(s) 564, 596, 811, 843
PstNI CAGNNNCTG 1 cut(s) 266
RsaI GTAC 2 cut(s) 667, 1092
RsaNI GTAC 2 cut(s) 666, 1091
SacI GAGCTC 1 cut(s) 969
SatI GCNGC 3 cut(s) 48, 417, 772
Sau3AI GATC 5 cut(s) 64, 170, 304, 553, 977
Sau96I GGNCC 3 cut(s) 209, 210, 724
ScaI AGTACT 1 cut(s) 1092
SchI GAGTC 4 cut(s) 143, 272, 448, 1121
ScrFI CCNGG 4 cut(s) 413, 723, 852, 1119
SduI GDGCHC 3 cut(s) 213, 908, 969
SetI ASST 8 cut(s) 790, 853, 883, 969, 986, 1001, 1041, 1120
SfaNI GCATC 3 cut(s) 442, 469, 748
SfcI CTRYAG 1 cut(s) 876
SfuI TTCGAA 1 cut(s) 491
SmlI CTYRAG 1 cut(s) 970
SmoI CTYRAG 1 cut(s) 970
SphI GCATGC 1 cut(s) 715
Sse9I AATT 2 cut(s) 283, 924
SseBI AGGCCT 1 cut(s) 517
SsiI CCGC 4 cut(s) 192, 339, 771, 930
SspMI CTAG 2 cut(s) 501, 600
SstI GAGCTC 1 cut(s) 969
StuI AGGCCT 1 cut(s) 517
StyD4I CCNGG 4 cut(s) 411, 721, 850, 1117
TaaI ACNGT 6 cut(s) 30, 76, 390, 576, 752, 962
TaqI TCGA 1 cut(s) 491
TasI AATT 2 cut(s) 283, 924
TatI WGTACW 2 cut(s) 665, 1090
TauI GCSGC 1 cut(s) 774
TfiI GAWTC 4 cut(s) 187, 335, 488, 1006
TscAI CASTG 3 cut(s) 79, 633, 967
TseFI GTSAC 1 cut(s) 1113
TseI GCWGC 2 cut(s) 47, 416
Tsp45I GTSAC 1 cut(s) 1113
TspDTI ATGAA 2 cut(s) 359, 482
TspGWI ACGGA 1 cut(s) 658
TspRI CASTG 3 cut(s) 79, 633, 967
XapI RAATTY 1 cut(s) 283
XceI RCATGY 1 cut(s) 715
XspI CTAG 2 cut(s) 501, 600
ZrmI AGTACT 1 cut(s) 1092
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.