Rh2CG248700

Oxidation resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0001099
Physical Location & Seq
Reverse (-)
26233663 .. 26234317
655 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG248700.1

Sequence Viewer

Length: 549 bp
ATGAGTGAAGAGAGTCCAGCTAATCCGGTTGACGGGCCTGACGCTTCTTCATTTACTGCATTTCTCTACTCACTGTTATCGTCGTCAGAGTCGGGAGATAAGAGCAAAAGTTCGGATCAACAGGTTGATGACCAAATGGATAAGCCCGACTCGTTGTCTGATTCTGCAGTGAAAGCAAACAGTGGGAAGAGAAGCTTGTTTTCCAAGGGGAAACACACGCTTAGTAAAGCTATGTACCAGGCTGCAAGATTTGGTGGGTATCGGAGTCAAGAGCGGAAGGGTAACCTTGATGTGAAAGGTGATGATGCGAATGACTCTGAGTTTACTGGAGTTGAGATGAGGCATATGCATAAAGCACAGAAGCCTGTGGCCTCGGTTCATTTGCCAGACATCTCTGAACCGTCTTTACTTCTTACTGAGAAAACTAGAATTGTTCTTTACAGTTCACTCCCGGCGCTAGTTCAGGGAAGACAATGGTTGTTACTATATAGTACATGGAGGCATGGCATATCACTTTCAACCCTATACAGAAGAAGTATGCTTTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TLD

Protein Analysis

182

Amino Acids

20.17

Weight (kDa)

7.92

Isoelectric Point (pI)

52.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TLD PF07534 132 - 178 1.8e-06 TLDc domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 274
AciI CCGC 1 cut(s) 274
AclWI GGATC 1 cut(s) 123
AfaI GTAC 2 cut(s) 236, 493
AfiI CCNNNNNNNGG 1 cut(s) 32
AgsI TTSAA 1 cut(s) 519
AhdI GACNNNNNGTC 1 cut(s) 154
AjnI CCWGG 1 cut(s) 237
AluBI AGCT 3 cut(s) 20, 195, 230
AluI AGCT 3 cut(s) 20, 195, 230
AlwI GGATC 1 cut(s) 123
AoxI GGCC 2 cut(s) 35, 369
ApeKI GCWGC 1 cut(s) 242
AspLEI GCGC 1 cut(s) 457
AspS9I GGNCC 1 cut(s) 35
AsuC2I CCSGG 1 cut(s) 452
AsuHPI GGTGA 1 cut(s) 311
BbsI GAAGAC 1 cut(s) 475
BbvI GCAGC 1 cut(s) 229
BciT130I CCWGG 1 cut(s) 239
BcnI CCSGG 1 cut(s) 452
BfaI CTAG 2 cut(s) 426, 458
BfmI CTRYAG 1 cut(s) 165
BfoI RGCGCY 1 cut(s) 458
BisI GCNGC 1 cut(s) 243
BlsI GCNGC 1 cut(s) 244
Bme1390I CCNGG 2 cut(s) 239, 452
BmeRI GACNNNNNGTC 1 cut(s) 154
BmgT120I GGNCC 1 cut(s) 35
BmrFI CCNGG 2 cut(s) 239, 452
BmsI GCATC 1 cut(s) 295
BpiI GAAGAC 1 cut(s) 475
BpmI CTGGAG 1 cut(s) 348
BpuMI CCSGG 1 cut(s) 452
BsaJI CCNNGG 2 cut(s) 204, 372
BsaWI WCCGGW 1 cut(s) 25
Bsc4I CCNNNNNNNGG 1 cut(s) 32
Bse1I ACTGG 1 cut(s) 331
BseBI CCWGG 1 cut(s) 239
BseDI CCNNGG 2 cut(s) 204, 372
BseLI CCNNNNNNNGG 1 cut(s) 32
BseMII CTCAG 2 cut(s) 309, 408
BseNI ACTGG 1 cut(s) 331
BseXI GCAGC 1 cut(s) 229
BshFI GGCC 2 cut(s) 37, 371
BsiSI CCGG 2 cut(s) 26, 452
BslI CCNNNNNNNGG 1 cut(s) 32
BsnI GGCC 2 cut(s) 37, 371
Bsp143I GATC 1 cut(s) 115
BspACI CCGC 1 cut(s) 274
BspANI GGCC 2 cut(s) 37, 371
BspCNI CTCAG 2 cut(s) 310, 409
BspMAI CTGCAG 1 cut(s) 169
BspPI GGATC 1 cut(s) 123
BsrBI CCGCTC 1 cut(s) 274
BsrI ACTGG 1 cut(s) 331
BssECI CCNNGG 2 cut(s) 204, 372
BssMI GATC 1 cut(s) 115
BssT1I CCWWGG 1 cut(s) 204
Bst2UI CCWGG 1 cut(s) 239
Bst4CI ACNGT 4 cut(s) 75, 182, 402, 443
Bst6I CTCTTC 2 cut(s) 3, 182
BstDEI CTNAG 3 cut(s) 221, 318, 417
BstEII GGTNACC 1 cut(s) 281
BstH2I RGCGCY 1 cut(s) 458
BstHHI GCGC 1 cut(s) 457
BstKTI GATC 1 cut(s) 118
BstMBI GATC 1 cut(s) 115
BstMWI GCNNNNNNNGC 1 cut(s) 173
BstNI CCWGG 1 cut(s) 239
BstPI GGTNACC 1 cut(s) 281
BstSCI CCNGG 2 cut(s) 237, 450
BstSFI CTRYAG 1 cut(s) 165
BstV1I GCAGC 1 cut(s) 229
BstV2I GAAGAC 1 cut(s) 475
BsuRI GGCC 2 cut(s) 37, 371
BtsI GCAGTG 1 cut(s) 174
BtsIMutI CAGTG 3 cut(s) 71, 174, 187
CfoI GCGC 1 cut(s) 457
Cfr13I GGNCC 1 cut(s) 35
CseI GACGC 1 cut(s) 50
Csp6I GTAC 2 cut(s) 235, 492
CviAII CATG 2 cut(s) 495, 503
CviJI RGCY 8 cut(s) 20, 37, 145, 195, 230, 242, 364, 371
CviKI_1 RGCY 8 cut(s) 20, 37, 145, 195, 230, 242, 364, 371
CviQI GTAC 2 cut(s) 235, 492
DdeI CTNAG 3 cut(s) 221, 318, 417
DpnI GATC 1 cut(s) 117
DpnII GATC 1 cut(s) 115
DriI GACNNNNNGTC 1 cut(s) 154
Eam1104I CTCTTC 2 cut(s) 3, 182
Eam1105I GACNNNNNGTC 1 cut(s) 154
EarI CTCTTC 2 cut(s) 3, 182
Eco130I CCWWGG 1 cut(s) 204
Eco91I GGTNACC 1 cut(s) 281
EcoO65I GGTNACC 1 cut(s) 281
EcoRII CCWGG 1 cut(s) 237
EcoT14I CCWWGG 1 cut(s) 204
EcoT22I ATGCAT 1 cut(s) 351
ErhI CCWWGG 1 cut(s) 204
FaeI CATG 2 cut(s) 498, 506
FalI AAGNNNNNCTT 2 cut(s) 179, 211
FatI CATG 2 cut(s) 494, 502
FauNDI CATATG 1 cut(s) 345
Fnu4HI GCNGC 1 cut(s) 243
Fsp4HI GCNGC 1 cut(s) 243
FspBI CTAG 2 cut(s) 426, 458
GlaI GCGC 1 cut(s) 456
GluI GCNGC 1 cut(s) 243
GsuI CTGGAG 1 cut(s) 348
HaeII RGCGCY 1 cut(s) 458
HaeIII GGCC 2 cut(s) 37, 371
HapII CCGG 2 cut(s) 26, 452
HgaI GACGC 1 cut(s) 50
HhaI GCGC 1 cut(s) 457
Hin1II CATG 2 cut(s) 498, 506
Hin6I GCGC 1 cut(s) 455
HinP1I GCGC 1 cut(s) 455
HincII GTYRAC 1 cut(s) 31
HindII GTYRAC 1 cut(s) 31
HindIII AAGCTT 1 cut(s) 193
HinfI GANTC 6 cut(s) 13, 89, 149, 161, 265, 314
HpaII CCGG 2 cut(s) 26, 452
HphI GGTGA 1 cut(s) 311
Hpy166II GTNNAC 3 cut(s) 31, 324, 446
Hpy188I TCNGA 6 cut(s) 88, 115, 160, 264, 319, 397
Hpy188III TCNNGA 2 cut(s) 93, 269
Hpy8I GTNNAC 3 cut(s) 31, 324, 446
Hpy99I CGWCG 1 cut(s) 85
HpyAV CCTTC 1 cut(s) 271
HpyCH4III ACNGT 4 cut(s) 75, 182, 402, 443
HpyCH4V TGCA 4 cut(s) 59, 167, 245, 349
HpyF10VI GCNNNNNNNGC 1 cut(s) 173
HpyF3I CTNAG 3 cut(s) 221, 318, 417
Hsp92II CATG 2 cut(s) 498, 506
HspAI GCGC 1 cut(s) 455
Kzo9I GATC 1 cut(s) 115
Lsp1109I GCAGC 1 cut(s) 229
LweI GCATC 1 cut(s) 295
MaeI CTAG 2 cut(s) 426, 458
MaeIII GTNAC 2 cut(s) 281, 480
MalI GATC 1 cut(s) 117
MbiI CCGCTC 1 cut(s) 274
MboI GATC 1 cut(s) 115
MboII GAAGA 5 cut(s) 20, 39, 199, 480, 543
MluCI AATT 1 cut(s) 429
MlyI GAGTC 5 cut(s) 22, 98, 143, 274, 308
MnlI CCTC 3 cut(s) 333, 382, 492
Mph1103I ATGCAT 1 cut(s) 351
MspI CCGG 2 cut(s) 26, 452
MspR9I CCNGG 2 cut(s) 239, 452
MvaI CCWGG 1 cut(s) 239
MwoI GCNNNNNNNGC 1 cut(s) 173
NciI CCSGG 1 cut(s) 452
NdeI CATATG 1 cut(s) 345
NdeII GATC 1 cut(s) 115
NlaIII CATG 2 cut(s) 498, 506
NsiI ATGCAT 1 cut(s) 351
PfeI GAWTC 1 cut(s) 161
PkrI GCNGC 1 cut(s) 244
PleI GAGTC 5 cut(s) 21, 97, 143, 273, 308
PpsI GAGTC 5 cut(s) 21, 97, 143, 273, 308
Psp6I CCWGG 1 cut(s) 237
PspEI GGTNACC 1 cut(s) 281
PspGI CCWGG 1 cut(s) 237
PspPI GGNCC 1 cut(s) 35
PsrI GAACNNNNNNTAC 2 cut(s) 390, 422
PstI CTGCAG 1 cut(s) 169
RsaI GTAC 2 cut(s) 236, 493
RsaNI GTAC 2 cut(s) 235, 492
SatI GCNGC 1 cut(s) 243
Sau3AI GATC 1 cut(s) 115
Sau96I GGNCC 1 cut(s) 35
SchI GAGTC 5 cut(s) 22, 98, 143, 274, 308
ScrFI CCNGG 2 cut(s) 239, 452
SetI ASST 6 cut(s) 22, 126, 197, 232, 288, 301
SfaNI GCATC 1 cut(s) 295
SfcI CTRYAG 1 cut(s) 165
Sse9I AATT 1 cut(s) 429
SsiI CCGC 1 cut(s) 274
SspMI CTAG 2 cut(s) 426, 458
StyD4I CCNGG 2 cut(s) 237, 450
StyI CCWWGG 1 cut(s) 204
TaaI ACNGT 4 cut(s) 75, 182, 402, 443
TasI AATT 1 cut(s) 429
TatI WGTACW 1 cut(s) 491
TfiI GAWTC 1 cut(s) 161
TscAI CASTG 3 cut(s) 78, 174, 187
TseI GCWGC 1 cut(s) 242
TspDTI ATGAA 2 cut(s) 39, 368
TspRI CASTG 3 cut(s) 78, 174, 187
XspI CTAG 2 cut(s) 426, 458
Zsp2I ATGCAT 1 cut(s) 351
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.