Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0001099

Physical Location & Seq

Genomic Coordinates Reverse (-)

26221416 .. 26222491

Gene Structure 1076 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG252700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

ATGAGTGAAGAGAGTCCAGCTAATCCAGTTGATGGGCCTGACACTTCTTCATTTACTGCATTTCTCTACTCACTGTTATCATCATCAGAGTCGGGAGATAAGAGCAAAAGTTCTGATGAACAGGTTGATGACCAAATAGATAAGAGCAACACATTGTCTGATTCTGCAGTGAAAGCAAACAGTGGGAAGAGAAGTTTGTTTTCTAAGGGGAAACACACGCGTAGTAAAGCTATGTACCAGGCTGCAAGATTTGGTGGGTATCGGAGTCAAGAGCGGAAGGGTAACCTTGATGTAAAAGGTGATGATGGGAATGACTCTGAGTTCACTGGAGTTGAGATGAGGCATATGCAGAAACCACAAAAGCCTGTGGCCTTGGTTCATTTGACAGACATCTCTGAACCGTCTTTACTTCTTACTGAGAAAACTAGAATTGCTCTTTACAGTTCACTCCCGGCACTAGTACAGGGAAGACGATGTACATGGAGGCATGGCATATCACTTTCAACCCTATACAGAAGAAGTATGCTTTGGCCTGGCCTGAGTTTGCTGGTTGTTGGAGACCGTAAAGGTGCAGTTTTTGGTGGCTTGGTGGAGGCACCTCTAAGACCAACCAACAAGAAGTATCAGGTCCTGCTGAAGCAAATACATCCTTGTGAATCCATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TLD

Protein Analysis

221

Amino Acids

24.33

Weight (kDa)

9.28

Isoelectric Point (pI)

48.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TLD	PF07534	132 - 209	2.5e-06	TLDc domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0001099)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39870 AT4G39870
fragaria_vesca	FvH4_1g20920 FvH4_1g20920 FvH4_1g20920 FvH4_1g20920 FvH4_1g20920 FvH4_1g20920 FvH4_1g20920
malus_domestica	MD15G1324300.v1.1
prunus_persica	Prupe.6G186700_v2.0.a1 Prupe.6G186700_v2.0.a1 Prupe.6G186700_v2.0.a1
pyrus_communis	pycom15g28620
rosa_chinensis	RchiOBHm_Chr2g0113781 RchiOBHm_Chr2g0113881 RchiOBHm_Chr2g0113891 RchiOBHm_Chr2g0113971 RchiOBHm_Chr2g0114361 RchiOBHm_Chr2g0114391
rosa_laevigata	RLG00000018083 RLG00000018090 RLG00000018093 RLG00000018098
rosa_multiflora	Rmu_sc0000431.1_g000017 Rmu_sc0000431.1_g000031 Rmu_sc0000881.1_g000009 Rmu_sc0009639.1_g000003 Rmu_sc0010543.1_g000005 Rmu_sc0016457.1_g000001
rosa_roxburghii	Rroxscaffold_2G00128310 Rroxscaffold_2G00130120
rosa_rugosa	Rorug02G0188800 Rorug02G0189600 Rorug02G0190200
rosa_samantha	Rh1BG230200 Rh2CG248400 Rh2CG248700 Rh2CG249200 Rh2CG250600 Rh2CG250800 Rh2DG250900 Rh2DG251100 Rh2DG251600 Rh2DG251700 Rh2DG251800 Rh2DG252300 Rh2DG252700 Rh2DG253900 Rh2DG254000 Rh2DG254500 Rh2DG255100
rosa_wichuraiana	Rw2G018480 Rw2G019000 Rw2G019070 Rw2G019140 Rw2G019170 Rw2G019210 Rw6G015390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	595
AccB7I	CCANNNNNTGG	1 cut(s)	32
AccBSI	CCGCTC	1 cut(s)	274
AccII	CGCG	1 cut(s)	220
AciI	CCGC	1 cut(s)	274
AcuI	CTGAAG	1 cut(s)	656
AfaI	GTAC	3 cut(s)	236, 462, 478
AfiI	CCNNNNNNNGG	1 cut(s)	32
AflIII	ACRYGT	1 cut(s)	218
AgsI	TTSAA	1 cut(s)	504
AhlI	ACTAGT	1 cut(s)	457
AjnI	CCWGG	2 cut(s)	237, 532
AjuI	GAANNNNNNNTTGG	2 cut(s)	511, 543
AluBI	AGCT	2 cut(s)	20, 230
AluI	AGCT	2 cut(s)	20, 230
Alw26I	GTCTC	1 cut(s)	552
AlwNI	CAGNNNCTG	1 cut(s)	631
AoxI	GGCC	4 cut(s)	35, 369, 530, 535
ApeKI	GCWGC	1 cut(s)	242
AspS9I	GGNCC	2 cut(s)	35, 628
AsuC2I	CCSGG	1 cut(s)	452
AsuHPI	GGTGA	1 cut(s)	311
AvaII	GGWCC	1 cut(s)	628
BanI	GGYRCC	1 cut(s)	595
BarI	GAAGNNNNNNTAC	2 cut(s)	460, 492
BbsI	GAAGAC	1 cut(s)	475
BbvI	GCAGC	1 cut(s)	229
BccI	CCATC	2 cut(s)	26, 299
BciT130I	CCWGG	2 cut(s)	239, 534
BcnI	CCSGG	1 cut(s)	452
BcoDI	GTCTC	1 cut(s)	552
BcuI	ACTAGT	1 cut(s)	457
BfaI	CTAG	3 cut(s)	426, 458, 664
BfmI	CTRYAG	1 cut(s)	165
BisI	GCNGC	1 cut(s)	243
BlsI	GCNGC	1 cut(s)	244
Bme1390I	CCNGG	3 cut(s)	239, 452, 534
Bme18I	GGWCC	1 cut(s)	628
BmgT120I	GGNCC	2 cut(s)	35, 628
BmiI	GGNNCC	1 cut(s)	597
BmrFI	CCNGG	3 cut(s)	239, 452, 534
BpiI	GAAGAC	1 cut(s)	475
BpmI	CTGGAG	1 cut(s)	348
BpuMI	CCSGG	1 cut(s)	452
BsaI	GGTCTC	1 cut(s)	552
BsaJI	CCNNGG	1 cut(s)	372
Bsc4I	CCNNNNNNNGG	1 cut(s)	32
Bse1I	ACTGG	2 cut(s)	26, 331
BseBI	CCWGG	2 cut(s)	239, 534
BseDI	CCNNGG	1 cut(s)	372
BseGI	GGATG	1 cut(s)	646
BseLI	CCNNNNNNNGG	1 cut(s)	32
BseMII	CTCAG	3 cut(s)	309, 408, 530
BseNI	ACTGG	2 cut(s)	26, 331
BseXI	GCAGC	1 cut(s)	229
BsgI	GTGCAG	1 cut(s)	591
Bsh1236I	CGCG	1 cut(s)	220
BshFI	GGCC	4 cut(s)	37, 371, 532, 537
BshNI	GGYRCC	1 cut(s)	595
BsiSI	CCGG	1 cut(s)	452
BslI	CCNNNNNNNGG	1 cut(s)	32
BsmAI	GTCTC	1 cut(s)	552
BsnI	GGCC	4 cut(s)	37, 371, 532, 537
Bso31I	GGTCTC	1 cut(s)	552
Bsp1407I	TGTACA	1 cut(s)	476
BspACI	CCGC	1 cut(s)	274
BspANI	GGCC	4 cut(s)	37, 371, 532, 537
BspCNI	CTCAG	3 cut(s)	310, 409, 531
BspFNI	CGCG	1 cut(s)	220
BspLI	GGNNCC	1 cut(s)	597
BspMAI	CTGCAG	1 cut(s)	169
BspT107I	GGYRCC	1 cut(s)	595
BspTNI	GGTCTC	1 cut(s)	552
BsrBI	CCGCTC	1 cut(s)	274
BsrGI	TGTACA	1 cut(s)	476
BsrI	ACTGG	2 cut(s)	26, 331
BssECI	CCNNGG	1 cut(s)	372
BssT1I	CCWWGG	1 cut(s)	372
Bst2UI	CCWGG	2 cut(s)	239, 534
Bst4CI	ACNGT	5 cut(s)	75, 182, 402, 443, 563
Bst6I	CTCTTC	2 cut(s)	3, 182
BstAUI	TGTACA	1 cut(s)	476
BstDEI	CTNAG	5 cut(s)	204, 318, 417, 539, 602
BstEII	GGTNACC	1 cut(s)	281
BstF5I	GGATG	1 cut(s)	646
BstFNI	CGCG	1 cut(s)	220
BstMAI	GTCTC	1 cut(s)	552
BstMWI	GCNNNNNNNGC	1 cut(s)	173
BstNI	CCWGG	2 cut(s)	239, 534
BstPI	GGTNACC	1 cut(s)	281
BstSCI	CCNGG	3 cut(s)	237, 450, 532
BstSFI	CTRYAG	1 cut(s)	165
BstUI	CGCG	1 cut(s)	220
BstV1I	GCAGC	1 cut(s)	229
BstV2I	GAAGAC	1 cut(s)	475
BsuRI	GGCC	4 cut(s)	37, 371, 532, 537
BtsCI	GGATG	1 cut(s)	646
BtsI	GCAGTG	1 cut(s)	174
BtsIMutI	CAGTG	4 cut(s)	71, 174, 187, 324
CaiI	CAGNNNCTG	1 cut(s)	631
Cfr13I	GGNCC	2 cut(s)	35, 628
Csp6I	GTAC	3 cut(s)	235, 461, 477
CviAII	CATG	2 cut(s)	480, 488
CviJI	RGCY	9 cut(s)	20, 37, 230, 242, 364, 371, 532, 537, 585
CviKI_1	RGCY	9 cut(s)	20, 37, 230, 242, 364, 371, 532, 537, 585
CviQI	GTAC	3 cut(s)	235, 461, 477
DdeI	CTNAG	5 cut(s)	204, 318, 417, 539, 602
Eam1104I	CTCTTC	2 cut(s)	3, 182
EarI	CTCTTC	2 cut(s)	3, 182
Eco130I	CCWWGG	1 cut(s)	372
Eco31I	GGTCTC	1 cut(s)	552
Eco47I	GGWCC	1 cut(s)	628
Eco57I	CTGAAG	1 cut(s)	656
Eco91I	GGTNACC	1 cut(s)	281
EcoO109I	RGGNCCY	1 cut(s)	628
EcoO65I	GGTNACC	1 cut(s)	281
EcoRII	CCWGG	2 cut(s)	237, 532
EcoT14I	CCWWGG	1 cut(s)	372
ErhI	CCWWGG	1 cut(s)	372
FaeI	CATG	2 cut(s)	483, 491
FaiI	YATR	8 cut(s)	233, 345, 347, 481, 489, 494, 511, 524
FatI	CATG	2 cut(s)	479, 487
FauNDI	CATATG	1 cut(s)	345
Fnu4HI	GCNGC	1 cut(s)	243
FokI	GGATG	1 cut(s)	633
Fsp4HI	GCNGC	1 cut(s)	243
FspBI	CTAG	3 cut(s)	426, 458, 664
GluI	GCNGC	1 cut(s)	243
GsuI	CTGGAG	1 cut(s)	348
HaeIII	GGCC	4 cut(s)	37, 371, 532, 537
HapII	CCGG	1 cut(s)	452
Hin1II	CATG	2 cut(s)	483, 491
HinfI	GANTC	6 cut(s)	13, 89, 161, 265, 314, 656
HpaII	CCGG	1 cut(s)	452
HphI	GGTGA	1 cut(s)	311
Hpy166II	GTNNAC	2 cut(s)	324, 446
Hpy188I	TCNGA	6 cut(s)	88, 115, 160, 264, 319, 397
Hpy188III	TCNNGA	2 cut(s)	93, 269
Hpy8I	GTNNAC	2 cut(s)	324, 446
HpyAV	CCTTC	1 cut(s)	271
HpyCH4III	ACNGT	5 cut(s)	75, 182, 402, 443, 563
HpyCH4V	TGCA	5 cut(s)	59, 167, 245, 349, 572
HpyF10VI	GCNNNNNNNGC	1 cut(s)	173
HpyF3I	CTNAG	5 cut(s)	204, 318, 417, 539, 602
Hsp92II	CATG	2 cut(s)	483, 491
Lsp1109I	GCAGC	1 cut(s)	229
MaeI	CTAG	3 cut(s)	426, 458, 664
MaeIII	GTNAC	1 cut(s)	281
MbiI	CCGCTC	1 cut(s)	274
MboII	GAAGA	5 cut(s)	20, 39, 199, 480, 528
MluCI	AATT	1 cut(s)	429
MluI	ACGCGT	1 cut(s)	218
MlyI	GAGTC	4 cut(s)	22, 98, 274, 308
MmeI	TCCRAC	1 cut(s)	535
MnlI	CCTC	4 cut(s)	333, 477, 586, 609
MslI	CAYNNNNRTG	1 cut(s)	651
MspI	CCGG	1 cut(s)	452
MspR9I	CCNGG	3 cut(s)	239, 452, 534
MvaI	CCWGG	2 cut(s)	239, 534
MvnI	CGCG	1 cut(s)	220
MwoI	GCNNNNNNNGC	1 cut(s)	173
NciI	CCSGG	1 cut(s)	452
NdeI	CATATG	1 cut(s)	345
NlaIII	CATG	2 cut(s)	483, 491
NlaIV	GGNNCC	1 cut(s)	597
PfeI	GAWTC	2 cut(s)	161, 656
PflMI	CCANNNNNTGG	1 cut(s)	32
PkrI	GCNGC	1 cut(s)	244
PleI	GAGTC	4 cut(s)	21, 97, 273, 308
PpsI	GAGTC	4 cut(s)	21, 97, 273, 308
PpuMI	RGGWCCY	1 cut(s)	628
Psp5II	RGGWCCY	1 cut(s)	628
Psp6I	CCWGG	2 cut(s)	237, 532
PspEI	GGTNACC	1 cut(s)	281
PspGI	CCWGG	2 cut(s)	237, 532
PspN4I	GGNNCC	1 cut(s)	597
PspPI	GGNCC	2 cut(s)	35, 628
PspPPI	RGGWCCY	1 cut(s)	628
PsrI	GAACNNNNNNTAC	2 cut(s)	390, 422
PstI	CTGCAG	1 cut(s)	169
PstNI	CAGNNNCTG	1 cut(s)	631
RsaI	GTAC	3 cut(s)	236, 462, 478
RsaNI	GTAC	3 cut(s)	235, 461, 477
RseI	CAYNNNNRTG	1 cut(s)	651
SatI	GCNGC	1 cut(s)	243
Sau96I	GGNCC	2 cut(s)	35, 628
SchI	GAGTC	4 cut(s)	22, 98, 274, 308
ScrFI	CCNGG	3 cut(s)	239, 452, 534
SetI	ASST	8 cut(s)	22, 126, 232, 288, 301, 571, 601, 630
SfcI	CTRYAG	1 cut(s)	165
SinI	GGWCC	1 cut(s)	628
SmiMI	CAYNNNNRTG	1 cut(s)	651
SpeI	ACTAGT	1 cut(s)	457
Sse9I	AATT	1 cut(s)	429
SsiI	CCGC	1 cut(s)	274
SspMI	CTAG	3 cut(s)	426, 458, 664
StyD4I	CCNGG	3 cut(s)	237, 450, 532
StyI	CCWWGG	1 cut(s)	372
TaaI	ACNGT	5 cut(s)	75, 182, 402, 443, 563
TasI	AATT	1 cut(s)	429
TatI	WGTACW	2 cut(s)	460, 476
TfiI	GAWTC	2 cut(s)	161, 656
TscAI	CASTG	4 cut(s)	78, 174, 187, 331
TseI	GCWGC	1 cut(s)	242
TspDTI	ATGAA	3 cut(s)	39, 132, 368
TspRI	CASTG	4 cut(s)	78, 174, 187, 331
Van91I	CCANNNNNTGG	1 cut(s)	32
VpaK11BI	GGWCC	1 cut(s)	628
XspI	CTAG	3 cut(s)	426, 458, 664

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.