Rh2DG250900

Oxidation resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0001099
Physical Location & Seq
Reverse (-)
25794734 .. 25795688
955 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG250900.1

Sequence Viewer

Length: 546 bp
ATGGATAAGAGCAACTCATTATCTGATTCTGCAGTGAAAGCAAACAGTGGGAAGAGAAGCTTGTTTTCCAAGGGGAAACACACGCTTAGTAAAGCTATGTACCAGGCTGCAAGATTTGGTGGGTATCGGAGTCAAGAGCGGAAGGGTAACCTTGATGTGAAAGGTGATGATGGACATGACTCTGAGTTTACTGGAGTTGAGATGAGGCATATGCATAAAGCACAGAAGCCTGTGGCTTTGGTTCATCTACCAGACATCTCCGAACCTTCTTTACTTCTTACTGAGAAAAATAGAATTGCTCTTTACAGTTCACTCCCAGCGCTAGTTCAGGGAAGACAATGGTTGTTACTATATAGTACATGGAGGCATGACATATCACTTTCAACCCTATACAGAAGAAGTATGCTTTGGCCTGGCCTCAGTTTGCTGGTTGTTGGAGACCGTAAAGGTGCAGTTTTTGGTGGCTTGGTGGAGGCACCTCTAAGACCAACCAACAAGAAGTATCAGGTCCTGCTGAAGCAAATACATCCTTATGAATCCATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TLD

Protein Analysis

181

Amino Acids

20.32

Weight (kDa)

9.91

Isoelectric Point (pI)

43.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TLD PF07534 87 - 169 1.9e-13 TLDc domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 475
AccBSI CCGCTC 1 cut(s) 139
AciI CCGC 1 cut(s) 139
AcuI CTGAAG 1 cut(s) 536
AfaI GTAC 2 cut(s) 101, 358
AfeI AGCGCT 1 cut(s) 321
AgsI TTSAA 1 cut(s) 384
AjnI CCWGG 2 cut(s) 102, 412
AjuI GAANNNNNNNTTGG 2 cut(s) 391, 423
AluBI AGCT 2 cut(s) 60, 95
AluI AGCT 2 cut(s) 60, 95
Alw26I GTCTC 1 cut(s) 432
AlwNI CAGNNNCTG 1 cut(s) 511
Aor51HI AGCGCT 1 cut(s) 321
AoxI GGCC 2 cut(s) 410, 415
ApeKI GCWGC 1 cut(s) 107
AspLEI GCGC 1 cut(s) 322
AspS9I GGNCC 1 cut(s) 508
AsuHPI GGTGA 1 cut(s) 176
AvaII GGWCC 1 cut(s) 508
BanI GGYRCC 1 cut(s) 475
BbsI GAAGAC 1 cut(s) 340
BbvI GCAGC 1 cut(s) 94
BccI CCATC 1 cut(s) 164
BciT130I CCWGG 2 cut(s) 104, 414
BcoDI GTCTC 1 cut(s) 432
BfaI CTAG 2 cut(s) 323, 544
BfmI CTRYAG 1 cut(s) 30
BfoI RGCGCY 1 cut(s) 323
BisI GCNGC 1 cut(s) 108
BlsI GCNGC 1 cut(s) 109
Bme1390I CCNGG 2 cut(s) 104, 414
Bme18I GGWCC 1 cut(s) 508
BmgT120I GGNCC 1 cut(s) 508
BmiI GGNNCC 1 cut(s) 477
BmrFI CCNGG 2 cut(s) 104, 414
BpiI GAAGAC 1 cut(s) 340
BpmI CTGGAG 1 cut(s) 213
BsaI GGTCTC 1 cut(s) 432
BsaJI CCNNGG 1 cut(s) 69
Bse1I ACTGG 1 cut(s) 196
BseBI CCWGG 2 cut(s) 104, 414
BseDI CCNNGG 1 cut(s) 69
BseGI GGATG 1 cut(s) 526
BseMII CTCAG 3 cut(s) 174, 273, 433
BseNI ACTGG 1 cut(s) 196
BseXI GCAGC 1 cut(s) 94
BseYI CCCAGC 1 cut(s) 316
BsgI GTGCAG 1 cut(s) 471
BshFI GGCC 2 cut(s) 412, 417
BshNI GGYRCC 1 cut(s) 475
BsmAI GTCTC 1 cut(s) 432
BsnI GGCC 2 cut(s) 412, 417
Bso31I GGTCTC 1 cut(s) 432
BspACI CCGC 1 cut(s) 139
BspANI GGCC 2 cut(s) 412, 417
BspCNI CTCAG 3 cut(s) 175, 274, 432
BspLI GGNNCC 1 cut(s) 477
BspMAI CTGCAG 1 cut(s) 34
BspT107I GGYRCC 1 cut(s) 475
BspTNI GGTCTC 1 cut(s) 432
BsrBI CCGCTC 1 cut(s) 139
BsrI ACTGG 1 cut(s) 196
BssECI CCNNGG 1 cut(s) 69
BssT1I CCWWGG 1 cut(s) 69
Bst2UI CCWGG 2 cut(s) 104, 414
Bst4CI ACNGT 3 cut(s) 47, 308, 443
Bst6I CTCTTC 1 cut(s) 47
BstDEI CTNAG 5 cut(s) 86, 183, 282, 419, 482
BstEII GGTNACC 1 cut(s) 146
BstF5I GGATG 1 cut(s) 526
BstH2I RGCGCY 1 cut(s) 323
BstHHI GCGC 1 cut(s) 322
BstMAI GTCTC 1 cut(s) 432
BstMWI GCNNNNNNNGC 1 cut(s) 38
BstNI CCWGG 2 cut(s) 104, 414
BstPI GGTNACC 1 cut(s) 146
BstSCI CCNGG 2 cut(s) 102, 412
BstSFI CTRYAG 1 cut(s) 30
BstV1I GCAGC 1 cut(s) 94
BstV2I GAAGAC 1 cut(s) 340
BsuRI GGCC 2 cut(s) 412, 417
BtsCI GGATG 1 cut(s) 526
BtsI GCAGTG 1 cut(s) 39
BtsIMutI CAGTG 2 cut(s) 39, 52
CaiI CAGNNNCTG 1 cut(s) 511
CfoI GCGC 1 cut(s) 322
Cfr13I GGNCC 1 cut(s) 508
Csp6I GTAC 2 cut(s) 100, 357
CviAII CATG 3 cut(s) 176, 360, 368
CviJI RGCY 8 cut(s) 60, 95, 107, 229, 236, 412, 417, 465
CviKI_1 RGCY 8 cut(s) 60, 95, 107, 229, 236, 412, 417, 465
CviQI GTAC 2 cut(s) 100, 357
DdeI CTNAG 5 cut(s) 86, 183, 282, 419, 482
Eam1104I CTCTTC 1 cut(s) 47
EarI CTCTTC 1 cut(s) 47
Eco130I CCWWGG 1 cut(s) 69
Eco31I GGTCTC 1 cut(s) 432
Eco47I GGWCC 1 cut(s) 508
Eco47III AGCGCT 1 cut(s) 321
Eco57I CTGAAG 1 cut(s) 536
Eco91I GGTNACC 1 cut(s) 146
EcoO109I RGGNCCY 1 cut(s) 508
EcoO65I GGTNACC 1 cut(s) 146
EcoRII CCWGG 2 cut(s) 102, 412
EcoT14I CCWWGG 1 cut(s) 69
EcoT22I ATGCAT 1 cut(s) 216
ErhI CCWWGG 1 cut(s) 69
FaeI CATG 3 cut(s) 179, 363, 371
FalI AAGNNNNNCTT 2 cut(s) 44, 76
FatI CATG 3 cut(s) 175, 359, 367
FauNDI CATATG 1 cut(s) 210
Fnu4HI GCNGC 1 cut(s) 108
FokI GGATG 1 cut(s) 513
Fsp4HI GCNGC 1 cut(s) 108
FspBI CTAG 2 cut(s) 323, 544
GlaI GCGC 1 cut(s) 321
GluI GCNGC 1 cut(s) 108
GsaI CCCAGC 1 cut(s) 320
GsuI CTGGAG 1 cut(s) 213
HaeII RGCGCY 1 cut(s) 323
HaeIII GGCC 2 cut(s) 412, 417
HhaI GCGC 1 cut(s) 322
Hin1II CATG 3 cut(s) 179, 363, 371
Hin6I GCGC 1 cut(s) 320
HinP1I GCGC 1 cut(s) 320
HindIII AAGCTT 1 cut(s) 58
HinfI GANTC 4 cut(s) 26, 130, 179, 536
HphI GGTGA 1 cut(s) 176
Hpy166II GTNNAC 2 cut(s) 189, 311
Hpy188I TCNGA 4 cut(s) 25, 129, 184, 262
Hpy188III TCNNGA 1 cut(s) 134
Hpy8I GTNNAC 2 cut(s) 189, 311
HpyAV CCTTC 2 cut(s) 136, 276
HpyCH4III ACNGT 3 cut(s) 47, 308, 443
HpyCH4V TGCA 4 cut(s) 32, 110, 214, 452
HpyF10VI GCNNNNNNNGC 1 cut(s) 38
HpyF3I CTNAG 5 cut(s) 86, 183, 282, 419, 482
Hsp92II CATG 3 cut(s) 179, 363, 371
HspAI GCGC 1 cut(s) 320
Lsp1109I GCAGC 1 cut(s) 94
MaeI CTAG 2 cut(s) 323, 544
MaeIII GTNAC 2 cut(s) 146, 345
MbiI CCGCTC 1 cut(s) 139
MboII GAAGA 3 cut(s) 64, 345, 408
MluCI AATT 1 cut(s) 294
MlyI GAGTC 2 cut(s) 139, 173
MmeI TCCRAC 1 cut(s) 415
MnlI CCTC 5 cut(s) 198, 357, 428, 466, 489
Mph1103I ATGCAT 1 cut(s) 216
MslI CAYNNNNRTG 1 cut(s) 531
MspR9I CCNGG 2 cut(s) 104, 414
MvaI CCWGG 2 cut(s) 104, 414
MwoI GCNNNNNNNGC 1 cut(s) 38
NdeI CATATG 1 cut(s) 210
NlaIII CATG 3 cut(s) 179, 363, 371
NlaIV GGNNCC 1 cut(s) 477
NsiI ATGCAT 1 cut(s) 216
PfeI GAWTC 2 cut(s) 26, 536
PkrI GCNGC 1 cut(s) 109
PleI GAGTC 2 cut(s) 138, 173
PpsI GAGTC 2 cut(s) 138, 173
PpuMI RGGWCCY 1 cut(s) 508
Psp5II RGGWCCY 1 cut(s) 508
Psp6I CCWGG 2 cut(s) 102, 412
PspEI GGTNACC 1 cut(s) 146
PspFI CCCAGC 1 cut(s) 316
PspGI CCWGG 2 cut(s) 102, 412
PspN4I GGNNCC 1 cut(s) 477
PspPI GGNCC 1 cut(s) 508
PspPPI RGGWCCY 1 cut(s) 508
PsrI GAACNNNNNNTAC 2 cut(s) 255, 287
PstI CTGCAG 1 cut(s) 34
PstNI CAGNNNCTG 1 cut(s) 511
RsaI GTAC 2 cut(s) 101, 358
RsaNI GTAC 2 cut(s) 100, 357
RseI CAYNNNNRTG 1 cut(s) 531
SatI GCNGC 1 cut(s) 108
Sau96I GGNCC 1 cut(s) 508
SchI GAGTC 2 cut(s) 139, 173
ScrFI CCNGG 2 cut(s) 104, 414
SetI ASST 8 cut(s) 62, 97, 153, 166, 268, 451, 481, 510
SfcI CTRYAG 1 cut(s) 30
SinI GGWCC 1 cut(s) 508
SmiMI CAYNNNNRTG 1 cut(s) 531
Sse9I AATT 1 cut(s) 294
SsiI CCGC 1 cut(s) 139
SspMI CTAG 2 cut(s) 323, 544
StyD4I CCNGG 2 cut(s) 102, 412
StyI CCWWGG 1 cut(s) 69
TaaI ACNGT 3 cut(s) 47, 308, 443
TasI AATT 1 cut(s) 294
TatI WGTACW 1 cut(s) 356
TfiI GAWTC 2 cut(s) 26, 536
TscAI CASTG 2 cut(s) 39, 52
TseI GCWGC 1 cut(s) 107
TspDTI ATGAA 1 cut(s) 233
TspRI CASTG 2 cut(s) 39, 52
VpaK11BI GGWCC 1 cut(s) 508
XspI CTAG 2 cut(s) 323, 544
Zsp2I ATGCAT 1 cut(s) 216
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.