Rw2G019170

Oxidation resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0001099
Physical Location & Seq
Reverse (-)
25173330 .. 25176589
3260 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G019170.1

Sequence Viewer

Length: 1050 bp
ATGGGTAGGCCAAGGAGTCTTCGCAACAAATCGGCCCACTTTGTGACTGATATCACTACTGGATTGCTCAACCCCATTTCTGACAAACCCTCCAAACCCTCTCCTTCTCCTCCTCCTGAAGATGTGGATGGGTCCAAAGGAAGTCAAAATGGAACAATGAGTGAAGAGAGTCCAGCTAATCCAGTTGATGGGCCTGACACTTCATTTACTGCATTTCTCTACTCACTGTTATCGTCATCAGAGTCGGGAGATAAGAGCAAAAGTTCGGATGAACAGGTTGATGACCAAATGGATAAGAGCAACTCATTATCTGATTCTGCGGTGAAAGCAAACAGTGGGAAGAGAAGCTTGTTTTCCAAGGGGGAACACACGCTTAGTAAAGCTATGTACCAGGCTGCAAGATATGGTTGGCATCGGAGTCAAGAGCGGAAGGGTAACCTTGACGTGAAAGACGTCTCCGTACCTTCTTTACTTCTTACTGAGAAAAATAGAATTGCTCTTTACAGTTCACTCCCAGCGCTAGTTCAGGGAAGTCAATGGTTGTTACTATCTAGTACATGGAGGCATGGCATATCACATTCAACCCTATACAGAAGAAGTGTGCTTTGGCCTGGCCTCAGTTTGTTGGTTGTTGGAGACTGTAAAGGTGCAGTTTTTGGTGGCTTGGTGGAGGCACCTCTAAGACCAACCAACAAGAAGTATCGGGGAACAAATGATACATTTGTTTTCACAAATACACCTGACCATCCTGTTATATATCGGCATATCGCCCTACAGGTACAGATTTATCCTCTTTGTGCCAACCTCTATTTTACATTGTGTGCTACTGACTTTTTAGCTATTGGTGGGGGTGGTCATTTTGCACTCTATTTGAACAGTGATCTATTGAGTGGATCAAGTTCAGTTTCAGAAACCTATGGGAATCCATGTCTTGCAAACTCAGAAGACTTTGATGTGAAAGAAGTAGAGTTATGGGGTTTTGTTTATGCTACTATGTATGAGGAAGTACTTGCTCAAAGCTGTATGGAGGCACCTGGGATTTGCCGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TLD

Protein Analysis

349

Amino Acids

38.05

Weight (kDa)

6.08

Isoelectric Point (pI)

46.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TLD PF07534 154 - 327 3.9e-32 TLDc domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 456
AccB1I GGYRCC 2 cut(s) 673, 1030
AccB7I CCANNNNNTGG 1 cut(s) 188
AccBSI CCGCTC 1 cut(s) 427
AciI CCGC 2 cut(s) 320, 427
AclWI GGATC 1 cut(s) 901
AcuI CTGAAG 1 cut(s) 138
AcyI GRCGYC 1 cut(s) 453
AdeI CACNNNGTG 1 cut(s) 43
AfaI GTAC 5 cut(s) 389, 462, 556, 780, 1008
AfeI AGCGCT 1 cut(s) 519
AfiI CCNNNNNNNGG 1 cut(s) 188
AgsI TTSAA 2 cut(s) 582, 874
AjiI CACGTC 1 cut(s) 445
AjnI CCWGG 3 cut(s) 390, 610, 1033
AjuI GAANNNNNNNTTGG 2 cut(s) 589, 621
AluBI AGCT 5 cut(s) 176, 348, 383, 839, 1020
AluI AGCT 5 cut(s) 176, 348, 383, 839, 1020
Alw26I GTCTC 2 cut(s) 460, 630
AlwI GGATC 1 cut(s) 901
Aor51HI AGCGCT 1 cut(s) 519
AoxI GGCC 5 cut(s) 8, 33, 191, 608, 613
ApeKI GCWGC 1 cut(s) 395
AspLEI GCGC 1 cut(s) 520
AspS9I GGNCC 3 cut(s) 34, 132, 191
AsuHPI GGTGA 1 cut(s) 334
AvaII GGWCC 1 cut(s) 132
BaeI ACNNNNGTAYC 2 cut(s) 708, 741
BanI GGYRCC 2 cut(s) 673, 1030
BbsI GAAGAC 2 cut(s) 11, 951
BbvI GCAGC 1 cut(s) 382
BccI CCATC 3 cut(s) 122, 182, 753
BciT130I CCWGG 3 cut(s) 392, 612, 1035
BcoDI GTCTC 2 cut(s) 460, 630
BfaI CTAG 2 cut(s) 521, 552
BfmI CTRYAG 1 cut(s) 773
BfoI RGCGCY 1 cut(s) 521
BisI GCNGC 1 cut(s) 396
BlsI GCNGC 1 cut(s) 397
BmcAI AGTACT 1 cut(s) 1008
Bme1390I CCNGG 3 cut(s) 392, 612, 1035
Bme18I GGWCC 1 cut(s) 132
BmgBI CACGTC 1 cut(s) 445
BmgT120I GGNCC 3 cut(s) 34, 132, 191
BmiI GGNNCC 3 cut(s) 133, 675, 1032
BmrFI CCNGG 3 cut(s) 392, 612, 1035
BmsI GCATC 1 cut(s) 421
BpiI GAAGAC 2 cut(s) 11, 951
BsaHI GRCGYC 1 cut(s) 453
BsaJI CCNNGG 3 cut(s) 11, 357, 1034
BsaXI ACNNNNNCTCC 2 cut(s) 74, 104
Bsc4I CCNNNNNNNGG 1 cut(s) 188
Bse1I ACTGG 2 cut(s) 64, 182
BseBI CCWGG 3 cut(s) 392, 612, 1035
BseDI CCNNGG 3 cut(s) 11, 357, 1034
BseGI GGATG 3 cut(s) 133, 274, 745
BseLI CCNNNNNNNGG 1 cut(s) 188
BseMII CTCAG 3 cut(s) 471, 631, 954
BseNI ACTGG 2 cut(s) 64, 182
BseRI GAGGAG 2 cut(s) 99, 102
BseXI GCAGC 1 cut(s) 382
BseYI CCCAGC 1 cut(s) 514
BsgI GTGCAG 1 cut(s) 669
BshFI GGCC 5 cut(s) 10, 35, 193, 610, 615
BshNI GGYRCC 2 cut(s) 673, 1030
BslI CCNNNNNNNGG 1 cut(s) 188
BsmAI GTCTC 2 cut(s) 460, 630
BsmBI CGTCTC 1 cut(s) 460
BsnI GGCC 5 cut(s) 10, 35, 193, 610, 615
Bsp143I GATC 2 cut(s) 880, 893
BspACI CCGC 2 cut(s) 320, 427
BspANI GGCC 5 cut(s) 10, 35, 193, 610, 615
BspCNI CTCAG 3 cut(s) 472, 630, 953
BspLI GGNNCC 3 cut(s) 133, 675, 1032
BspPI GGATC 1 cut(s) 901
BspT107I GGYRCC 2 cut(s) 673, 1030
BsrBI CCGCTC 1 cut(s) 427
BsrI ACTGG 2 cut(s) 64, 182
BssECI CCNNGG 3 cut(s) 11, 357, 1034
BssMI GATC 2 cut(s) 880, 893
BssNI GRCGYC 1 cut(s) 453
BssT1I CCWWGG 2 cut(s) 11, 357
Bst2UI CCWGG 3 cut(s) 392, 612, 1035
Bst4CI ACNGT 5 cut(s) 228, 335, 506, 641, 878
Bst6I CTCTTC 2 cut(s) 159, 335
BstACI GRCGYC 1 cut(s) 453
BstDEI CTNAG 5 cut(s) 374, 480, 617, 680, 940
BstEII GGTNACC 1 cut(s) 434
BstF5I GGATG 3 cut(s) 133, 274, 745
BstH2I RGCGCY 1 cut(s) 521
BstHHI GCGC 1 cut(s) 520
BstKTI GATC 2 cut(s) 883, 896
BstMAI GTCTC 2 cut(s) 460, 630
BstMBI GATC 2 cut(s) 880, 893
BstMWI GCNNNNNNNGC 1 cut(s) 326
BstNI CCWGG 3 cut(s) 392, 612, 1035
BstPI GGTNACC 1 cut(s) 434
BstSCI CCNGG 3 cut(s) 390, 610, 1033
BstSFI CTRYAG 1 cut(s) 773
BstV1I GCAGC 1 cut(s) 382
BstV2I GAAGAC 2 cut(s) 11, 951
BsuRI GGCC 5 cut(s) 10, 35, 193, 610, 615
BtrI CACGTC 1 cut(s) 445
BtsCI GGATG 3 cut(s) 133, 274, 745
BtsIMutI CAGTG 3 cut(s) 224, 340, 883
CfoI GCGC 1 cut(s) 520
Cfr13I GGNCC 3 cut(s) 34, 132, 191
Csp6I GTAC 5 cut(s) 388, 461, 555, 779, 1007
CviAII CATG 3 cut(s) 558, 566, 927
CviQI GTAC 5 cut(s) 388, 461, 555, 779, 1007
DdeI CTNAG 5 cut(s) 374, 480, 617, 680, 940
DpnI GATC 2 cut(s) 882, 895
DpnII GATC 2 cut(s) 880, 893
DraIII CACNNNGTG 1 cut(s) 43
Eam1104I CTCTTC 2 cut(s) 159, 335
EarI CTCTTC 2 cut(s) 159, 335
Eco130I CCWWGG 2 cut(s) 11, 357
Eco32I GATATC 1 cut(s) 52
Eco47I GGWCC 1 cut(s) 132
Eco47III AGCGCT 1 cut(s) 519
Eco57I CTGAAG 1 cut(s) 138
Eco91I GGTNACC 1 cut(s) 434
EcoO65I GGTNACC 1 cut(s) 434
EcoRII CCWGG 3 cut(s) 390, 610, 1033
EcoRV GATATC 1 cut(s) 52
EcoT14I CCWWGG 2 cut(s) 11, 357
ErhI CCWWGG 2 cut(s) 11, 357
Esp3I CGTCTC 1 cut(s) 460
FaeI CATG 3 cut(s) 561, 569, 930
FalI AAGNNNNNCTT 2 cut(s) 332, 364
FatI CATG 3 cut(s) 557, 565, 926
Fnu4HI GCNGC 1 cut(s) 396
FokI GGATG 3 cut(s) 140, 281, 732
Fsp4HI GCNGC 1 cut(s) 396
FspBI CTAG 2 cut(s) 521, 552
GlaI GCGC 1 cut(s) 519
GluI GCNGC 1 cut(s) 396
GsaI CCCAGC 1 cut(s) 518
HaeII RGCGCY 1 cut(s) 521
HaeIII GGCC 5 cut(s) 10, 35, 193, 610, 615
HhaI GCGC 1 cut(s) 520
Hin1I GRCGYC 1 cut(s) 453
Hin1II CATG 3 cut(s) 561, 569, 930
Hin6I GCGC 1 cut(s) 518
HinP1I GCGC 1 cut(s) 518
HindIII AAGCTT 1 cut(s) 346
HinfI GANTC 6 cut(s) 16, 169, 242, 314, 418, 922
HphI GGTGA 1 cut(s) 334
Hpy166II GTNNAC 1 cut(s) 509
Hpy188I TCNGA 7 cut(s) 82, 241, 268, 313, 417, 910, 943
Hpy188III TCNNGA 3 cut(s) 116, 246, 422
Hpy8I GTNNAC 1 cut(s) 509
HpyAV CCTTC 3 cut(s) 114, 424, 474
HpyCH4III ACNGT 5 cut(s) 228, 335, 506, 641, 878
HpyCH4IV ACGT 2 cut(s) 444, 453
HpyCH4V TGCA 5 cut(s) 212, 398, 650, 863, 935
HpyF10VI GCNNNNNNNGC 1 cut(s) 326
HpyF3I CTNAG 5 cut(s) 374, 480, 617, 680, 940
HpySE526I ACGT 2 cut(s) 444, 453
Hsp92I GRCGYC 1 cut(s) 453
Hsp92II CATG 3 cut(s) 561, 569, 930
HspAI GCGC 1 cut(s) 518
Kzo9I GATC 2 cut(s) 880, 893
Lsp1109I GCAGC 1 cut(s) 382
LweI GCATC 1 cut(s) 421
MaeI CTAG 2 cut(s) 521, 552
MaeII ACGT 2 cut(s) 444, 453
MaeIII GTNAC 3 cut(s) 43, 434, 543
MalI GATC 2 cut(s) 882, 895
MbiI CCGCTC 1 cut(s) 427
MboI GATC 2 cut(s) 880, 893
MboII GAAGA 6 cut(s) 11, 131, 176, 352, 606, 956
MluCI AATT 1 cut(s) 492
MlyI GAGTC 4 cut(s) 25, 178, 251, 427
MmeI TCCRAC 1 cut(s) 613
MspR9I CCNGG 3 cut(s) 392, 612, 1035
MvaI CCWGG 3 cut(s) 392, 612, 1035
MwoI GCNNNNNNNGC 1 cut(s) 326
NdeII GATC 2 cut(s) 880, 893
NlaIII CATG 3 cut(s) 561, 569, 930
NlaIV GGNNCC 3 cut(s) 133, 675, 1032
NmuCI GTSAC 1 cut(s) 43
PcsI WCGNNNNNNNCGW 1 cut(s) 450
PfeI GAWTC 2 cut(s) 314, 922
PflMI CCANNNNNTGG 1 cut(s) 188
PkrI GCNGC 1 cut(s) 397
PleI GAGTC 4 cut(s) 24, 177, 250, 426
PpsI GAGTC 4 cut(s) 24, 177, 250, 426
Psp6I CCWGG 3 cut(s) 390, 610, 1033
PspEI GGTNACC 1 cut(s) 434
PspFI CCCAGC 1 cut(s) 514
PspGI CCWGG 3 cut(s) 390, 610, 1033
PspN4I GGNNCC 3 cut(s) 133, 675, 1032
PspPI GGNCC 3 cut(s) 34, 132, 191
PsrI GAACNNNNNNTAC 2 cut(s) 700, 732
RsaI GTAC 5 cut(s) 389, 462, 556, 780, 1008
RsaNI GTAC 5 cut(s) 388, 461, 555, 779, 1007
SatI GCNGC 1 cut(s) 396
Sau3AI GATC 2 cut(s) 880, 893
Sau96I GGNCC 3 cut(s) 34, 132, 191
ScaI AGTACT 1 cut(s) 1008
SchI GAGTC 4 cut(s) 25, 178, 251, 427
ScrFI CCNGG 3 cut(s) 392, 612, 1035
SfaNI GCATC 1 cut(s) 421
SfcI CTRYAG 1 cut(s) 773
SinI GGWCC 1 cut(s) 132
Sse9I AATT 1 cut(s) 492
SsiI CCGC 2 cut(s) 320, 427
SspMI CTAG 2 cut(s) 521, 552
StyD4I CCNGG 3 cut(s) 390, 610, 1033
StyI CCWWGG 2 cut(s) 11, 357
TaaI ACNGT 5 cut(s) 228, 335, 506, 641, 878
TaiI ACGT 2 cut(s) 447, 456
TasI AATT 1 cut(s) 492
TatI WGTACW 2 cut(s) 554, 1006
TfiI GAWTC 2 cut(s) 314, 922
TscAI CASTG 3 cut(s) 231, 340, 883
TseFI GTSAC 1 cut(s) 43
TseI GCWGC 1 cut(s) 395
Tsp45I GTSAC 1 cut(s) 43
TspDTI ATGAA 2 cut(s) 192, 285
TspGWI ACGGA 1 cut(s) 448
TspRI CASTG 3 cut(s) 231, 340, 883
Van91I CCANNNNNTGG 1 cut(s) 188
VpaK11BI GGWCC 1 cut(s) 132
XspI CTAG 2 cut(s) 521, 552
ZraI GACGTC 1 cut(s) 454
ZrmI AGTACT 1 cut(s) 1008
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.