Rw6G015390

Oxidation resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0001099
Physical Location & Seq
Forward (+)
29036358 .. 29041099
4742 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G015390.1

Sequence Viewer

Length: 789 bp
ATGTTGGGTATCTGTCTGACCCACACAATGGTCATTCCCAATCCGGTTAAGTCAGAAGCTGTGGATGTGTCGAAAGGCAGTCAAAATGGATCAATAATTGAAGAGAGTCCAGCTAATCTAGTTGATGGGCCTGACACTTCTTCATTTACTGCATTTCTCTACTCACTGTTTTCGTCATCAGAGTCGGGAGATAAGAGTAAAAGTTCAGATGAACAGGTTGATGACCAAATGGATAAGAGCAACGCATTGTCCGATTCTGCTGTGAAAGCAAACAGTAGGAAGAGAAGCTTGTTTTCTAAGGGGAAACACACGCTTAGTAAAGCTATGTACCAGGCAGCAAGATTTGGTGGGTATCGGAGTCCAGAGCGGAAGGGTAACCTTTGTAAAAGTACATGGAGGCATGGCATATCACTTTCAACCCTATACAGAAGAAGTATGCTTTGGCCTGGCCTCAGTTTGCTGGTTGTTCGAGACCACAAAGGTGCAATTTTTGGTGGCTTGGTGGAGACACCTCTAAGACCAACCAACAAGAAATGCCAACCGCTATTCACATTGTGCGGTACTGACTTTTTAGCTATTGGTGGGGGTCGTCGTTTTGCACTCTATTTCAATAGTGGTCTATTGAGTGGATCAAGTTCAGTTTCAGAAACCTATGCGAATCCATGTCTCGCAGACTCAGAAGACTTTGATGCGAAAGAAGTAGAGTTATGGGGTTTTGTGTATGCTACTAAGTATGAGGAAGTACTTGCTCAAAGCCATATGGAGGCACCTGGGATTTGCCGAAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TLD

Protein Analysis

262

Amino Acids

28.61

Weight (kDa)

8.46

Isoelectric Point (pI)

46.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TLD PF07534 127 - 178 3.8e-06 TLDc domain
TLD PF07534 179 - 239 2.5e-10 TLDc domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 766
AccB7I CCANNNNNTGG 1 cut(s) 28
AccBSI CCGCTC 1 cut(s) 367
AciI CCGC 3 cut(s) 367, 542, 558
AclWI GGATC 2 cut(s) 97, 637
AdeI CACNNNGTG 1 cut(s) 555
AfaI GTAC 4 cut(s) 329, 391, 562, 744
AfiI CCNNNNNNNGG 2 cut(s) 28, 763
AgsI TTSAA 3 cut(s) 101, 417, 610
AjnI CCWGG 3 cut(s) 330, 445, 769
AjuI GAANNNNNNNTTGG 2 cut(s) 424, 456
AleI CACNNNNGTG 1 cut(s) 480
AluBI AGCT 5 cut(s) 59, 113, 288, 323, 575
AluI AGCT 5 cut(s) 59, 113, 288, 323, 575
Alw26I GTCTC 3 cut(s) 465, 500, 671
AlwI GGATC 2 cut(s) 97, 637
AlwNI CAGNNNCTG 1 cut(s) 59
AoxI GGCC 3 cut(s) 128, 443, 448
ApeKI GCWGC 1 cut(s) 335
AspS9I GGNCC 1 cut(s) 128
BanI GGYRCC 1 cut(s) 766
BbsI GAAGAC 1 cut(s) 687
BbvI GCAGC 1 cut(s) 347
BccI CCATC 1 cut(s) 119
BciT130I CCWGG 3 cut(s) 332, 447, 771
BcoDI GTCTC 3 cut(s) 465, 500, 671
BfaI CTAG 1 cut(s) 119
BisI GCNGC 1 cut(s) 336
BlsI GCNGC 1 cut(s) 337
BmcAI AGTACT 1 cut(s) 744
Bme1390I CCNGG 3 cut(s) 332, 447, 771
BmgT120I GGNCC 1 cut(s) 128
BmiI GGNNCC 1 cut(s) 768
BmrFI CCNGG 3 cut(s) 332, 447, 771
BmsI GCATC 1 cut(s) 679
BpiI GAAGAC 1 cut(s) 687
BsaI GGTCTC 1 cut(s) 465
BsaJI CCNNGG 1 cut(s) 770
BsaWI WCCGGW 1 cut(s) 43
Bsc4I CCNNNNNNNGG 2 cut(s) 28, 763
BseBI CCWGG 3 cut(s) 332, 447, 771
BseDI CCNNGG 1 cut(s) 770
BseGI GGATG 1 cut(s) 70
BseLI CCNNNNNNNGG 2 cut(s) 28, 763
BseMII CTCAG 2 cut(s) 466, 690
BseXI GCAGC 1 cut(s) 347
BshFI GGCC 3 cut(s) 130, 445, 450
BshNI GGYRCC 1 cut(s) 766
BsiSI CCGG 1 cut(s) 44
BslI CCNNNNNNNGG 2 cut(s) 28, 763
BsmAI GTCTC 3 cut(s) 465, 500, 671
BsnI GGCC 3 cut(s) 130, 445, 450
Bso31I GGTCTC 1 cut(s) 465
Bsp143I GATC 2 cut(s) 89, 629
BspACI CCGC 3 cut(s) 367, 542, 558
BspANI GGCC 3 cut(s) 130, 445, 450
BspCNI CTCAG 2 cut(s) 465, 689
BspLI GGNNCC 1 cut(s) 768
BspPI GGATC 2 cut(s) 97, 637
BspT107I GGYRCC 1 cut(s) 766
BspTNI GGTCTC 1 cut(s) 465
BsrBI CCGCTC 1 cut(s) 367
BssECI CCNNGG 1 cut(s) 770
BssMI GATC 2 cut(s) 89, 629
Bst2UI CCWGG 3 cut(s) 332, 447, 771
Bst4CI ACNGT 2 cut(s) 168, 275
Bst6I CTCTTC 2 cut(s) 96, 275
BstDEI CTNAG 6 cut(s) 297, 314, 452, 515, 676, 729
BstEII GGTNACC 1 cut(s) 374
BstF5I GGATG 1 cut(s) 70
BstKTI GATC 2 cut(s) 92, 632
BstMAI GTCTC 3 cut(s) 465, 500, 671
BstMBI GATC 2 cut(s) 89, 629
BstMWI GCNNNNNNNGC 1 cut(s) 266
BstNI CCWGG 3 cut(s) 332, 447, 771
BstPI GGTNACC 1 cut(s) 374
BstSCI CCNGG 3 cut(s) 330, 445, 769
BstV1I GCAGC 1 cut(s) 347
BstV2I GAAGAC 1 cut(s) 687
BsuRI GGCC 3 cut(s) 130, 445, 450
BtsCI GGATG 1 cut(s) 70
BtsIMutI CAGTG 1 cut(s) 164
CaiI CAGNNNCTG 1 cut(s) 59
Cfr13I GGNCC 1 cut(s) 128
Csp6I GTAC 4 cut(s) 328, 390, 561, 743
CviAII CATG 3 cut(s) 393, 401, 663
CviQI GTAC 4 cut(s) 328, 390, 561, 743
DdeI CTNAG 6 cut(s) 297, 314, 452, 515, 676, 729
DpnI GATC 2 cut(s) 91, 631
DpnII GATC 2 cut(s) 89, 629
DraIII CACNNNGTG 1 cut(s) 555
Eam1104I CTCTTC 2 cut(s) 96, 275
EarI CTCTTC 2 cut(s) 96, 275
Eco31I GGTCTC 1 cut(s) 465
Eco91I GGTNACC 1 cut(s) 374
EcoO65I GGTNACC 1 cut(s) 374
EcoRII CCWGG 3 cut(s) 330, 445, 769
FaeI CATG 3 cut(s) 396, 404, 666
FalI AAGNNNNNCTT 2 cut(s) 272, 304
FatI CATG 3 cut(s) 392, 400, 662
FauNDI CATATG 1 cut(s) 759
Fnu4HI GCNGC 1 cut(s) 336
FokI GGATG 1 cut(s) 77
Fsp4HI GCNGC 1 cut(s) 336
FspBI CTAG 1 cut(s) 119
GluI GCNGC 1 cut(s) 336
HaeIII GGCC 3 cut(s) 130, 445, 450
HapII CCGG 1 cut(s) 44
Hin1II CATG 3 cut(s) 396, 404, 666
HindIII AAGCTT 1 cut(s) 286
HinfI GANTC 6 cut(s) 106, 182, 254, 358, 658, 674
HpaII CCGG 1 cut(s) 44
Hpy188I TCNGA 8 cut(s) 18, 55, 181, 208, 253, 357, 646, 679
Hpy188III TCNNGA 3 cut(s) 186, 362, 470
Hpy99I CGWCG 1 cut(s) 594
HpyAV CCTTC 2 cut(s) 364, 777
HpyCH4III ACNGT 2 cut(s) 168, 275
HpyCH4V TGCA 3 cut(s) 152, 485, 599
HpyF10VI GCNNNNNNNGC 1 cut(s) 266
HpyF3I CTNAG 6 cut(s) 297, 314, 452, 515, 676, 729
Hsp92II CATG 3 cut(s) 396, 404, 666
Kzo9I GATC 2 cut(s) 89, 629
Lsp1109I GCAGC 1 cut(s) 347
LweI GCATC 1 cut(s) 679
MaeI CTAG 1 cut(s) 119
MaeIII GTNAC 1 cut(s) 374
MalI GATC 2 cut(s) 91, 631
MbiI CCGCTC 1 cut(s) 367
MboI GATC 2 cut(s) 89, 629
MboII GAAGA 5 cut(s) 113, 132, 292, 441, 692
MluCI AATT 2 cut(s) 96, 486
MlyI GAGTC 4 cut(s) 115, 191, 367, 668
MnlI CCTC 5 cut(s) 390, 461, 522, 730, 757
MseI TTAA 1 cut(s) 48
MslI CAYNNNNRTG 1 cut(s) 480
MspI CCGG 1 cut(s) 44
MspR9I CCNGG 3 cut(s) 332, 447, 771
MvaI CCWGG 3 cut(s) 332, 447, 771
MwoI GCNNNNNNNGC 1 cut(s) 266
NdeI CATATG 1 cut(s) 759
NdeII GATC 2 cut(s) 89, 629
NlaIII CATG 3 cut(s) 396, 404, 666
NlaIV GGNNCC 1 cut(s) 768
OliI CACNNNNGTG 1 cut(s) 480
PcsI WCGNNNNNNNCGW 1 cut(s) 249
PfeI GAWTC 2 cut(s) 254, 658
PflMI CCANNNNNTGG 1 cut(s) 28
PkrI GCNGC 1 cut(s) 337
PleI GAGTC 4 cut(s) 114, 190, 366, 668
PpsI GAGTC 4 cut(s) 114, 190, 366, 668
Psp6I CCWGG 3 cut(s) 330, 445, 769
PspEI GGTNACC 1 cut(s) 374
PspGI CCWGG 3 cut(s) 330, 445, 769
PspN4I GGNNCC 1 cut(s) 768
PspPI GGNCC 1 cut(s) 128
PstNI CAGNNNCTG 1 cut(s) 59
RsaI GTAC 4 cut(s) 329, 391, 562, 744
RsaNI GTAC 4 cut(s) 328, 390, 561, 743
RseI CAYNNNNRTG 1 cut(s) 480
SaqAI TTAA 1 cut(s) 48
SatI GCNGC 1 cut(s) 336
Sau3AI GATC 2 cut(s) 89, 629
Sau96I GGNCC 1 cut(s) 128
ScaI AGTACT 1 cut(s) 744
SchI GAGTC 4 cut(s) 115, 191, 367, 668
ScrFI CCNGG 3 cut(s) 332, 447, 771
SfaNI GCATC 1 cut(s) 679
SmiMI CAYNNNNRTG 1 cut(s) 480
Sse9I AATT 2 cut(s) 96, 486
SsiI CCGC 3 cut(s) 367, 542, 558
SspMI CTAG 1 cut(s) 119
StyD4I CCNGG 3 cut(s) 330, 445, 769
TaaI ACNGT 2 cut(s) 168, 275
TaqI TCGA 2 cut(s) 71, 469
TasI AATT 2 cut(s) 96, 486
TatI WGTACW 2 cut(s) 389, 742
TfiI GAWTC 2 cut(s) 254, 658
Tru1I TTAA 1 cut(s) 48
Tru9I TTAA 1 cut(s) 48
TscAI CASTG 1 cut(s) 171
TseI GCWGC 1 cut(s) 335
TspDTI ATGAA 2 cut(s) 132, 225
TspRI CASTG 1 cut(s) 171
Van91I CCANNNNNTGG 1 cut(s) 28
XspI CTAG 1 cut(s) 119
ZrmI AGTACT 1 cut(s) 744
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.