Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001099

Physical Location & Seq

Genomic Coordinates Reverse (-)

26066662 .. 26069639

Gene Structure 2978 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ48726

Sequence Viewer

CDS Protein Promoter (2k)

Length: 828 bp

ATGGATAAGAGCAACTCATTGTCTGATTCTGCAGTGAAAGCAAACAGTGGGAAGAGAAGCTTGTTTTCCAAGGGGAAACACACGCTTAGTAAAGCTATGTACCAGGCTGCAAGATTTGGTGGGTATCGGAGTCAAGAGCGGAAGGGTAACCTTGATGTAAAAGGTGATGATGGGAATGACTCTGAGTTCGCTGGAGTTGAGATGAGGCATATGCAGAAACCACAAAAGCCTGTGGCCTTGGTTCATTTGACAGACATCTCCGAACTGTCTTTACTTCTTACTGAGAAAACTAGAATTGCTCTTTACAGTTCACTCCCGGCGCTAGTACAGGGAAGACGATGGTTGTTACTATATAGTACATGGAGGCATGGCATATCACTTTCAACCCTATACAGAAGAAGTATGCTTTGGCCTGGCCTCAGTTTGCTGGTTGTTGGAGACCGTAAAGGTGCAGTTTTTGATGGCTTGGTGGAGGCACCTCTAAGACCAATCAACAAGAAGTATCAGGGAACAAATGATACATTTGTTTTCACAAATACACCTGACCATCCTGTTATATATCACCCTACAGGTGCCAACCGCTATTTCACATTGTGCGCTACTGACTTTTTAGCTATTGGTGGGGGTGGTCATTTTGCACTCTACTTGAACAGTGATCTATTGAGTGGATCAAGTTCAGTTTCAGAAACCTATGGGAATCCATGTCTTGCAAACTCAGAAGACTTTGATGTGAAAGAAGTAGAGTTATGGGGTTTTGTTTATGCTACTAAGTATGAGGAAGTACTTGCTCAAAGCCGTATGGAGGCACCTGGGGTTTGCCGATGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TLD

Protein Analysis

275

Amino Acids

30.54

Weight (kDa)

8.84

Isoelectric Point (pI)

39.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TLD	PF07534	89 - 252	1.9e-38	TLDc domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001099)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39870 AT4G39870
fragaria_vesca	FvH4_1g20920 FvH4_1g20920 FvH4_1g20920 FvH4_1g20920 FvH4_1g20920 FvH4_1g20920 FvH4_1g20920
malus_domestica	MD15G1324300.v1.1
prunus_persica	Prupe.6G186700_v2.0.a1 Prupe.6G186700_v2.0.a1 Prupe.6G186700_v2.0.a1
pyrus_communis	pycom15g28620
rosa_chinensis	RchiOBHm_Chr2g0113781 RchiOBHm_Chr2g0113881 RchiOBHm_Chr2g0113891 RchiOBHm_Chr2g0113971 RchiOBHm_Chr2g0114361 RchiOBHm_Chr2g0114391
rosa_laevigata	RLG00000018083 RLG00000018090 RLG00000018093 RLG00000018098
rosa_multiflora	Rmu_sc0000431.1_g000017 Rmu_sc0000431.1_g000031 Rmu_sc0000881.1_g000009 Rmu_sc0009639.1_g000003 Rmu_sc0010543.1_g000005 Rmu_sc0016457.1_g000001
rosa_roxburghii	Rroxscaffold_2G00128310 Rroxscaffold_2G00130120
rosa_rugosa	Rorug02G0188800 Rorug02G0189600 Rorug02G0190200
rosa_samantha	Rh1BG230200 Rh2CG248400 Rh2CG248700 Rh2CG249200 Rh2CG250600 Rh2CG250800 Rh2DG250900 Rh2DG251100 Rh2DG251600 Rh2DG251700 Rh2DG251800 Rh2DG252300 Rh2DG252700 Rh2DG253900 Rh2DG254000 Rh2DG254500 Rh2DG255100
rosa_wichuraiana	Rw2G018480 Rw2G019000 Rw2G019070 Rw2G019140 Rw2G019170 Rw2G019210 Rw6G015390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	475, 572, 805
AccBSI	CCGCTC	1 cut(s)	139
AciI	CCGC	2 cut(s)	139, 580
AclWI	GGATC	1 cut(s)	676
AdeI	CACNNNGTG	1 cut(s)	594
AfaI	GTAC	4 cut(s)	101, 327, 358, 783
AfiI	CCNNNNNNNGG	1 cut(s)	802
AgsI	TTSAA	2 cut(s)	384, 649
AjnI	CCWGG	3 cut(s)	102, 412, 808
AjuI	GAANNNNNNNTTGG	4 cut(s)	391, 423, 569, 601
AluBI	AGCT	3 cut(s)	60, 95, 614
AluI	AGCT	3 cut(s)	60, 95, 614
Alw26I	GTCTC	1 cut(s)	432
AlwI	GGATC	1 cut(s)	676
AoxI	GGCC	3 cut(s)	234, 410, 415
ApeKI	GCWGC	1 cut(s)	107
ArsI	GACNNNNNNTTYG	2 cut(s)	170, 202
AspLEI	GCGC	2 cut(s)	322, 599
AsuC2I	CCSGG	1 cut(s)	317
AsuHPI	GGTGA	2 cut(s)	176, 554
BaeI	ACNNNNGTAYC	2 cut(s)	510, 543
BanI	GGYRCC	3 cut(s)	475, 572, 805
BbsI	GAAGAC	2 cut(s)	340, 726
BbvI	GCAGC	1 cut(s)	94
BccI	CCATC	5 cut(s)	164, 333, 455, 555, 816
BceAI	ACGGC	1 cut(s)	780
BciT130I	CCWGG	3 cut(s)	104, 414, 810
BcnI	CCSGG	1 cut(s)	317
BcoDI	GTCTC	1 cut(s)	432
BfaI	CTAG	2 cut(s)	291, 323
BfmI	CTRYAG	2 cut(s)	30, 567
BfoI	RGCGCY	1 cut(s)	323
BisI	GCNGC	1 cut(s)	108
BlsI	GCNGC	1 cut(s)	109
BmcAI	AGTACT	1 cut(s)	783
Bme1390I	CCNGG	4 cut(s)	104, 317, 414, 810
BmiI	GGNNCC	3 cut(s)	477, 574, 807
BmrFI	CCNGG	4 cut(s)	104, 317, 414, 810
BpiI	GAAGAC	2 cut(s)	340, 726
BpmI	CTGGAG	1 cut(s)	213
BpuMI	CCSGG	1 cut(s)	317
BsaI	GGTCTC	1 cut(s)	432
BsaJI	CCNNGG	3 cut(s)	69, 237, 809
Bsc4I	CCNNNNNNNGG	1 cut(s)	802
BseBI	CCWGG	3 cut(s)	104, 414, 810
BseDI	CCNNGG	3 cut(s)	69, 237, 809
BseGI	GGATG	1 cut(s)	547
BseLI	CCNNNNNNNGG	1 cut(s)	802
BseMII	CTCAG	4 cut(s)	174, 273, 433, 729
BseXI	GCAGC	1 cut(s)	94
BsgI	GTGCAG	1 cut(s)	471
BshFI	GGCC	3 cut(s)	236, 412, 417
BshNI	GGYRCC	3 cut(s)	475, 572, 805
BsiSI	CCGG	1 cut(s)	317
BslI	CCNNNNNNNGG	1 cut(s)	802
BsmAI	GTCTC	1 cut(s)	432
BsnI	GGCC	3 cut(s)	236, 412, 417
Bso31I	GGTCTC	1 cut(s)	432
Bsp143I	GATC	2 cut(s)	655, 668
BspACI	CCGC	2 cut(s)	139, 580
BspANI	GGCC	3 cut(s)	236, 412, 417
BspCNI	CTCAG	4 cut(s)	175, 274, 432, 728
BspLI	GGNNCC	3 cut(s)	477, 574, 807
BspMAI	CTGCAG	1 cut(s)	34
BspPI	GGATC	1 cut(s)	676
BspT107I	GGYRCC	3 cut(s)	475, 572, 805
BspTNI	GGTCTC	1 cut(s)	432
BsrBI	CCGCTC	1 cut(s)	139
BssECI	CCNNGG	3 cut(s)	69, 237, 809
BssMI	GATC	2 cut(s)	655, 668
BssT1I	CCWWGG	2 cut(s)	69, 237
Bst2UI	CCWGG	3 cut(s)	104, 414, 810
Bst4CI	ACNGT	5 cut(s)	47, 267, 308, 443, 653
Bst6I	CTCTTC	1 cut(s)	47
BstDEI	CTNAG	7 cut(s)	86, 183, 282, 419, 482, 715, 768
BstEII	GGTNACC	1 cut(s)	146
BstF5I	GGATG	1 cut(s)	547
BstH2I	RGCGCY	1 cut(s)	323
BstHHI	GCGC	2 cut(s)	322, 599
BstKTI	GATC	2 cut(s)	658, 671
BstMAI	GTCTC	1 cut(s)	432
BstMBI	GATC	2 cut(s)	655, 668
BstMWI	GCNNNNNNNGC	1 cut(s)	38
BstNI	CCWGG	3 cut(s)	104, 414, 810
BstPI	GGTNACC	1 cut(s)	146
BstSCI	CCNGG	4 cut(s)	102, 315, 412, 808
BstSFI	CTRYAG	2 cut(s)	30, 567
BstV1I	GCAGC	1 cut(s)	94
BstV2I	GAAGAC	2 cut(s)	340, 726
BsuRI	GGCC	3 cut(s)	236, 412, 417
BtsCI	GGATG	1 cut(s)	547
BtsI	GCAGTG	1 cut(s)	39
BtsIMutI	CAGTG	3 cut(s)	39, 52, 658
CfoI	GCGC	2 cut(s)	322, 599
Csp6I	GTAC	4 cut(s)	100, 326, 357, 782
CviAII	CATG	3 cut(s)	360, 368, 702
CviQI	GTAC	4 cut(s)	100, 326, 357, 782
DdeI	CTNAG	7 cut(s)	86, 183, 282, 419, 482, 715, 768
DpnI	GATC	2 cut(s)	657, 670
DpnII	GATC	2 cut(s)	655, 668
DraIII	CACNNNGTG	1 cut(s)	594
Eam1104I	CTCTTC	1 cut(s)	47
EarI	CTCTTC	1 cut(s)	47
Eco130I	CCWWGG	2 cut(s)	69, 237
Eco31I	GGTCTC	1 cut(s)	432
Eco91I	GGTNACC	1 cut(s)	146
EcoO65I	GGTNACC	1 cut(s)	146
EcoRII	CCWGG	3 cut(s)	102, 412, 808
EcoT14I	CCWWGG	2 cut(s)	69, 237
ErhI	CCWWGG	2 cut(s)	69, 237
FaeI	CATG	3 cut(s)	363, 371, 705
FalI	AAGNNNNNCTT	2 cut(s)	44, 76
FatI	CATG	3 cut(s)	359, 367, 701
FauNDI	CATATG	1 cut(s)	210
Fnu4HI	GCNGC	1 cut(s)	108
FokI	GGATG	1 cut(s)	534
Fsp4HI	GCNGC	1 cut(s)	108
FspBI	CTAG	2 cut(s)	291, 323
GlaI	GCGC	2 cut(s)	321, 598
GluI	GCNGC	1 cut(s)	108
GsuI	CTGGAG	1 cut(s)	213
HaeII	RGCGCY	1 cut(s)	323
HaeIII	GGCC	3 cut(s)	236, 412, 417
HapII	CCGG	1 cut(s)	317
HhaI	GCGC	2 cut(s)	322, 599
Hin1II	CATG	3 cut(s)	363, 371, 705
Hin6I	GCGC	2 cut(s)	320, 597
HinP1I	GCGC	2 cut(s)	320, 597
HindIII	AAGCTT	1 cut(s)	58
HinfI	GANTC	4 cut(s)	26, 130, 179, 697
HpaII	CCGG	1 cut(s)	317
HphI	GGTGA	2 cut(s)	176, 554
Hpy166II	GTNNAC	1 cut(s)	311
Hpy188I	TCNGA	6 cut(s)	25, 129, 184, 262, 685, 718
Hpy188III	TCNNGA	1 cut(s)	134
Hpy8I	GTNNAC	1 cut(s)	311
HpyAV	CCTTC	1 cut(s)	136
HpyCH4III	ACNGT	5 cut(s)	47, 267, 308, 443, 653
HpyCH4V	TGCA	6 cut(s)	32, 110, 214, 452, 638, 710
HpyF10VI	GCNNNNNNNGC	1 cut(s)	38
HpyF3I	CTNAG	7 cut(s)	86, 183, 282, 419, 482, 715, 768
Hsp92II	CATG	3 cut(s)	363, 371, 705
HspAI	GCGC	2 cut(s)	320, 597
Kzo9I	GATC	2 cut(s)	655, 668
Lsp1109I	GCAGC	1 cut(s)	94
MaeI	CTAG	2 cut(s)	291, 323
MaeIII	GTNAC	2 cut(s)	146, 345
MalI	GATC	2 cut(s)	657, 670
MbiI	CCGCTC	1 cut(s)	139
MboI	GATC	2 cut(s)	655, 668
MboII	GAAGA	4 cut(s)	64, 345, 408, 731
MluCI	AATT	1 cut(s)	294
MlyI	GAGTC	2 cut(s)	139, 173
MmeI	TCCRAC	1 cut(s)	415
MnlI	CCTC	7 cut(s)	198, 357, 428, 466, 489, 769, 796
MspI	CCGG	1 cut(s)	317
MspR9I	CCNGG	4 cut(s)	104, 317, 414, 810
MvaI	CCWGG	3 cut(s)	104, 414, 810
MwoI	GCNNNNNNNGC	1 cut(s)	38
NciI	CCSGG	1 cut(s)	317
NdeI	CATATG	1 cut(s)	210
NdeII	GATC	2 cut(s)	655, 668
NlaIII	CATG	3 cut(s)	363, 371, 705
NlaIV	GGNNCC	3 cut(s)	477, 574, 807
PfeI	GAWTC	2 cut(s)	26, 697
PkrI	GCNGC	1 cut(s)	109
PleI	GAGTC	2 cut(s)	138, 173
PpsI	GAGTC	2 cut(s)	138, 173
Psp6I	CCWGG	3 cut(s)	102, 412, 808
PspEI	GGTNACC	1 cut(s)	146
PspGI	CCWGG	3 cut(s)	102, 412, 808
PspN4I	GGNNCC	3 cut(s)	477, 574, 807
PsrI	GAACNNNNNNTAC	4 cut(s)	255, 287, 502, 534
PstI	CTGCAG	1 cut(s)	34
RsaI	GTAC	4 cut(s)	101, 327, 358, 783
RsaNI	GTAC	4 cut(s)	100, 326, 357, 782
SatI	GCNGC	1 cut(s)	108
Sau3AI	GATC	2 cut(s)	655, 668
ScaI	AGTACT	1 cut(s)	783
SchI	GAGTC	2 cut(s)	139, 173
ScrFI	CCNGG	4 cut(s)	104, 317, 414, 810
SfcI	CTRYAG	2 cut(s)	30, 567
Sse9I	AATT	1 cut(s)	294
SsiI	CCGC	2 cut(s)	139, 580
SspMI	CTAG	2 cut(s)	291, 323
StyD4I	CCNGG	4 cut(s)	102, 315, 412, 808
StyI	CCWWGG	2 cut(s)	69, 237
TaaI	ACNGT	5 cut(s)	47, 267, 308, 443, 653
TasI	AATT	1 cut(s)	294
TatI	WGTACW	3 cut(s)	325, 356, 781
TfiI	GAWTC	2 cut(s)	26, 697
TscAI	CASTG	3 cut(s)	39, 52, 658
TseI	GCWGC	1 cut(s)	107
TspDTI	ATGAA	1 cut(s)	233
TspRI	CASTG	3 cut(s)	39, 52, 658
XspI	CTAG	2 cut(s)	291, 323
ZrmI	AGTACT	1 cut(s)	783

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.