RLG00000018093

Oxidation resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0001099
Physical Location & Seq
Reverse (-)
25246764 .. 25251316
4553 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000018093

Sequence Viewer

Length: 1239 bp
ATGGGTAGGCCAAGGAGTCTTCGCAGCAAAGCGACCCACTTTGTGACTGATATCACTACTGGATTGCTCAACCCCATTTCTGACAAACCCTCCAAACCCTCTCCCTTCTCCGCTTCCTGTAAGCTCTCTAGCTTTCTTTACTCGAAACCCTTTCTGGGTTTTAATGGTTCTTTATTGGGTGCCAAAACCCAGCTCTCTGCTGTGCCAAAGATTAGGACTTTTCTAGGTTCTGGAGCTGAAGACGTGGATGGTTCCAAAGGAAGTCAAAATGGAACAATGACTGAAGAGAGTCCAGCTAATCCAGTTGATGGGCCTGACACTTCTTCATTTACAGCATTTCTCTACTCACTGTTATCGTCATCAGAGTCGGGAGATAAGAGCAAAAGTTCGGATGAACAGGTTGATGACCAAATGGATAAGAGCAACTCATTGTCTGATTCTGCAGTGAAAGCAAACAGTGGAAAGAGAAGCTTGTTTTCCAAGGGGAAACACACGCTTGGTAAAGCTATGTACCAGGCTGCAAGATTTGGTGGGTGTCGGAGTCAAGAGCGGAAGGGCAACCTTGATGTAAATGGTGATGATGACAATGACTCTGAGTTCGCTGGAGTTGAGATGAGGCACATGCAGAAACCACAAAAGCCTGTGGCCTTAGTTCATCTACCAGACATCTCCGAACCTTCTGGACTTCCTACTGAGAAAACTAGAATTGCTCTTTACAGATCACTCCCGGCGCTAGTTCAGGGAAGACAATGGTTGTTACTATATGGTACATGGAGGTATGGCATATCACTTTCAACCCTATACAGAAGAAGTATGCTTTGGCCTGGCCTCAGTTTGCTGGTTATTGGAGACCGTAAAGGTGCAGTTTTTGGTGGCTTGGTGGAGGCACCTCTAAGACCAACCAACAAGAAGTATCAGGGAACAAATGATACATTTGTTTTCACAAATACACCTGGCCATCCTGTTATATATCGCCTTACAGGTGCCAACCGCTACTTCACATTGTGCGCTGCTGACTTTTTAGCTATTGGTGGGGGTGGTCATTTTGCACTCTATTTGAACAGTGATCTATTGAGTGGATCAAGTTCAGTTTCAGAAACCTATGGGAATCCATGTCCTGCAAACTCAGAAGACTTTGATGTGAAAGAAGTAGAGTTATGGGGTTTTGTGTATGCTACTAAGTATGAGGAAGTACTTGCTCAAAGTCGTGTGGAGGCACCTGGGATTTGCCGATGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TLD

Protein Analysis

413

Amino Acids

44.71

Weight (kDa)

8.62

Isoelectric Point (pI)

37.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TLD PF07534 224 - 389 2.2e-35 TLDc domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 4 cut(s) 179, 886, 983, 1216
AccB7I CCANNNNNTGG 1 cut(s) 308
AccBSI CCGCTC 1 cut(s) 550
AciI CCGC 3 cut(s) 111, 550, 991
AclWI GGATC 1 cut(s) 1087
AcoI YGGCCR 1 cut(s) 955
AcuI CTGAAG 2 cut(s) 258, 303
AdeI CACNNNGTG 2 cut(s) 43, 1005
AfaI GTAC 3 cut(s) 512, 769, 1194
AfiI CCNNNNNNNGG 2 cut(s) 155, 308
AgsI TTSAA 2 cut(s) 795, 1060
AjiI CACGTC 1 cut(s) 244
AjnI CCWGG 4 cut(s) 513, 823, 952, 1219
AjuI GAANNNNNNNTTGG 4 cut(s) 802, 834, 980, 1012
AluBI AGCT 8 cut(s) 124, 132, 193, 236, 296, 471, 506, 1025
AluI AGCT 8 cut(s) 124, 132, 193, 236, 296, 471, 506, 1025
Alw26I GTCTC 1 cut(s) 843
AlwI GGATC 1 cut(s) 1087
AoxI GGCC 6 cut(s) 8, 311, 645, 821, 826, 955
ApeKI GCWGC 3 cut(s) 24, 518, 1010
ArsI GACNNNNNNTTYG 2 cut(s) 581, 613
AspLEI GCGC 2 cut(s) 733, 1010
AspS9I GGNCC 1 cut(s) 311
AsuC2I CCSGG 1 cut(s) 728
AsuHPI GGTGA 1 cut(s) 587
BaeI ACNNNNGTAYC 2 cut(s) 921, 954
BalI TGGCCA 1 cut(s) 957
BanI GGYRCC 4 cut(s) 179, 886, 983, 1216
BbsI GAAGAC 4 cut(s) 11, 246, 751, 1137
BbvI GCAGC 3 cut(s) 36, 505, 997
BccI CCATC 4 cut(s) 242, 302, 966, 1227
BciT130I CCWGG 4 cut(s) 515, 825, 954, 1221
BcnI CCSGG 1 cut(s) 728
BcoDI GTCTC 1 cut(s) 843
BfaI CTAG 4 cut(s) 129, 224, 702, 734
BfmI CTRYAG 1 cut(s) 441
BfoI RGCGCY 1 cut(s) 734
BisI GCNGC 3 cut(s) 25, 519, 1011
BlsI GCNGC 3 cut(s) 26, 520, 1012
BmcAI AGTACT 1 cut(s) 1194
Bme1390I CCNGG 5 cut(s) 515, 728, 825, 954, 1221
BmgBI CACGTC 1 cut(s) 244
BmgT120I GGNCC 1 cut(s) 311
BmiI GGNNCC 5 cut(s) 181, 253, 888, 985, 1218
BmrFI CCNGG 5 cut(s) 515, 728, 825, 954, 1221
BpiI GAAGAC 4 cut(s) 11, 246, 751, 1137
BpmI CTGGAG 2 cut(s) 252, 624
BpuMI CCSGG 1 cut(s) 728
BsaI GGTCTC 1 cut(s) 843
BsaJI CCNNGG 3 cut(s) 11, 480, 1220
BsaXI ACNNNNNCTCC 2 cut(s) 74, 104
Bsc4I CCNNNNNNNGG 2 cut(s) 155, 308
Bse1I ACTGG 2 cut(s) 64, 302
BseBI CCWGG 4 cut(s) 515, 825, 954, 1221
BseDI CCNNGG 3 cut(s) 11, 480, 1220
BseGI GGATG 3 cut(s) 253, 397, 958
BseLI CCNNNNNNNGG 2 cut(s) 155, 308
BseMII CTCAG 4 cut(s) 585, 684, 844, 1140
BseNI ACTGG 2 cut(s) 64, 302
BseXI GCAGC 3 cut(s) 36, 505, 997
BseYI CCCAGC 1 cut(s) 189
BsgI GTGCAG 1 cut(s) 882
BshFI GGCC 6 cut(s) 10, 313, 647, 823, 828, 957
BshNI GGYRCC 4 cut(s) 179, 886, 983, 1216
BsiSI CCGG 1 cut(s) 728
BslI CCNNNNNNNGG 2 cut(s) 155, 308
BsmAI GTCTC 1 cut(s) 843
BsnI GGCC 6 cut(s) 10, 313, 647, 823, 828, 957
Bso31I GGTCTC 1 cut(s) 843
Bsp143I GATC 3 cut(s) 719, 1066, 1079
BspACI CCGC 3 cut(s) 111, 550, 991
BspANI GGCC 6 cut(s) 10, 313, 647, 823, 828, 957
BspCNI CTCAG 4 cut(s) 586, 685, 843, 1139
BspLI GGNNCC 5 cut(s) 181, 253, 888, 985, 1218
BspMAI CTGCAG 1 cut(s) 445
BspPI GGATC 1 cut(s) 1087
BspT107I GGYRCC 4 cut(s) 179, 886, 983, 1216
BspTNI GGTCTC 1 cut(s) 843
BsrBI CCGCTC 1 cut(s) 550
BsrI ACTGG 2 cut(s) 64, 302
BssECI CCNNGG 3 cut(s) 11, 480, 1220
BssMI GATC 3 cut(s) 719, 1066, 1079
BssT1I CCWWGG 2 cut(s) 11, 480
Bst2UI CCWGG 4 cut(s) 515, 825, 954, 1221
Bst4CI ACNGT 4 cut(s) 351, 458, 854, 1064
Bst6I CTCTTC 1 cut(s) 279
BstDEI CTNAG 7 cut(s) 594, 649, 693, 830, 893, 1126, 1179
BstF5I GGATG 3 cut(s) 253, 397, 958
BstH2I RGCGCY 1 cut(s) 734
BstHHI GCGC 2 cut(s) 733, 1010
BstKTI GATC 3 cut(s) 722, 1069, 1082
BstMAI GTCTC 1 cut(s) 843
BstMBI GATC 3 cut(s) 719, 1066, 1079
BstMWI GCNNNNNNNGC 1 cut(s) 449
BstNI CCWGG 4 cut(s) 515, 825, 954, 1221
BstNSI RCATGY 1 cut(s) 625
BstSCI CCNGG 5 cut(s) 513, 726, 823, 952, 1219
BstSFI CTRYAG 1 cut(s) 441
BstV1I GCAGC 3 cut(s) 36, 505, 997
BstV2I GAAGAC 4 cut(s) 11, 246, 751, 1137
BsuRI GGCC 6 cut(s) 10, 313, 647, 823, 828, 957
BtrI CACGTC 1 cut(s) 244
BtsCI GGATG 3 cut(s) 253, 397, 958
BtsI GCAGTG 1 cut(s) 450
BtsIMutI CAGTG 4 cut(s) 347, 450, 463, 1069
CfoI GCGC 2 cut(s) 733, 1010
Cfr13I GGNCC 1 cut(s) 311
Csp6I GTAC 3 cut(s) 511, 768, 1193
CviAII CATG 3 cut(s) 622, 771, 1113
CviQI GTAC 3 cut(s) 511, 768, 1193
DdeI CTNAG 7 cut(s) 594, 649, 693, 830, 893, 1126, 1179
DpnI GATC 3 cut(s) 721, 1068, 1081
DpnII GATC 3 cut(s) 719, 1066, 1079
DraIII CACNNNGTG 2 cut(s) 43, 1005
EaeI YGGCCR 1 cut(s) 955
Eam1104I CTCTTC 1 cut(s) 279
EarI CTCTTC 1 cut(s) 279
Eco130I CCWWGG 2 cut(s) 11, 480
Eco31I GGTCTC 1 cut(s) 843
Eco32I GATATC 1 cut(s) 52
Eco57I CTGAAG 2 cut(s) 258, 303
EcoRII CCWGG 4 cut(s) 513, 823, 952, 1219
EcoRV GATATC 1 cut(s) 52
EcoT14I CCWWGG 2 cut(s) 11, 480
ErhI CCWWGG 2 cut(s) 11, 480
FaeI CATG 3 cut(s) 625, 774, 1116
FalI AAGNNNNNCTT 2 cut(s) 455, 487
FatI CATG 3 cut(s) 621, 770, 1112
Fnu4HI GCNGC 3 cut(s) 25, 519, 1011
FokI GGATG 3 cut(s) 260, 404, 945
Fsp4HI GCNGC 3 cut(s) 25, 519, 1011
FspBI CTAG 4 cut(s) 129, 224, 702, 734
GlaI GCGC 2 cut(s) 732, 1009
GluI GCNGC 3 cut(s) 25, 519, 1011
GsaI CCCAGC 1 cut(s) 193
GsuI CTGGAG 2 cut(s) 252, 624
HaeII RGCGCY 1 cut(s) 734
HaeIII GGCC 6 cut(s) 10, 313, 647, 823, 828, 957
HapII CCGG 1 cut(s) 728
HhaI GCGC 2 cut(s) 733, 1010
Hin1II CATG 3 cut(s) 625, 774, 1116
Hin6I GCGC 2 cut(s) 731, 1008
HinP1I GCGC 2 cut(s) 731, 1008
HindIII AAGCTT 1 cut(s) 469
HinfI GANTC 7 cut(s) 16, 289, 365, 437, 541, 590, 1108
HpaII CCGG 1 cut(s) 728
HphI GGTGA 1 cut(s) 587
Hpy188I TCNGA 9 cut(s) 82, 364, 391, 436, 540, 595, 673, 1096, 1129
Hpy188III TCNNGA 4 cut(s) 231, 369, 545, 681
HpyAV CCTTC 3 cut(s) 115, 547, 687
HpyCH4III ACNGT 4 cut(s) 351, 458, 854, 1064
HpyCH4IV ACGT 1 cut(s) 243
HpyCH4V TGCA 6 cut(s) 443, 521, 625, 863, 1049, 1121
HpyF10VI GCNNNNNNNGC 1 cut(s) 449
HpyF3I CTNAG 7 cut(s) 594, 649, 693, 830, 893, 1126, 1179
HpySE526I ACGT 1 cut(s) 243
Hsp92II CATG 3 cut(s) 625, 774, 1116
HspAI GCGC 2 cut(s) 731, 1008
Kzo9I GATC 3 cut(s) 719, 1066, 1079
LmnI GCTCC 1 cut(s) 233
Lsp1109I GCAGC 3 cut(s) 36, 505, 997
MaeI CTAG 4 cut(s) 129, 224, 702, 734
MaeII ACGT 1 cut(s) 243
MaeIII GTNAC 2 cut(s) 43, 756
MalI GATC 3 cut(s) 721, 1068, 1081
MbiI CCGCTC 1 cut(s) 550
MboI GATC 3 cut(s) 719, 1066, 1079
MboII GAAGA 7 cut(s) 11, 251, 296, 315, 756, 819, 1142
MlsI TGGCCA 1 cut(s) 957
MluCI AATT 1 cut(s) 705
MluNI TGGCCA 1 cut(s) 957
MlyI GAGTC 5 cut(s) 25, 298, 374, 550, 584
MmeI TCCRAC 1 cut(s) 518
MnlI CCTC 9 cut(s) 100, 109, 609, 768, 839, 877, 900, 1180, 1207
Mox20I TGGCCA 1 cut(s) 957
MscI TGGCCA 1 cut(s) 957
MseI TTAA 1 cut(s) 162
Msp20I TGGCCA 1 cut(s) 957
MspI CCGG 1 cut(s) 728
MspR9I CCNGG 5 cut(s) 515, 728, 825, 954, 1221
MvaI CCWGG 4 cut(s) 515, 825, 954, 1221
MwoI GCNNNNNNNGC 1 cut(s) 449
NciI CCSGG 1 cut(s) 728
NdeII GATC 3 cut(s) 719, 1066, 1079
NlaIII CATG 3 cut(s) 625, 774, 1116
NlaIV GGNNCC 5 cut(s) 181, 253, 888, 985, 1218
NmuCI GTSAC 1 cut(s) 43
NspI RCATGY 1 cut(s) 625
PfeI GAWTC 2 cut(s) 437, 1108
PflMI CCANNNNNTGG 1 cut(s) 308
PkrI GCNGC 3 cut(s) 26, 520, 1012
PleI GAGTC 5 cut(s) 24, 297, 373, 549, 584
PpsI GAGTC 5 cut(s) 24, 297, 373, 549, 584
Psp6I CCWGG 4 cut(s) 513, 823, 952, 1219
PspFI CCCAGC 1 cut(s) 189
PspGI CCWGG 4 cut(s) 513, 823, 952, 1219
PspN4I GGNNCC 5 cut(s) 181, 253, 888, 985, 1218
PspPI GGNCC 1 cut(s) 311
PsrI GAACNNNNNNTAC 2 cut(s) 913, 945
PstI CTGCAG 1 cut(s) 445
RsaI GTAC 3 cut(s) 512, 769, 1194
RsaNI GTAC 3 cut(s) 511, 768, 1193
SaqAI TTAA 1 cut(s) 162
SatI GCNGC 3 cut(s) 25, 519, 1011
Sau3AI GATC 3 cut(s) 719, 1066, 1079
Sau96I GGNCC 1 cut(s) 311
ScaI AGTACT 1 cut(s) 1194
SchI GAGTC 5 cut(s) 25, 298, 374, 550, 584
ScrFI CCNGG 5 cut(s) 515, 728, 825, 954, 1221
SfcI CTRYAG 1 cut(s) 441
Sse9I AATT 1 cut(s) 705
SsiI CCGC 3 cut(s) 111, 550, 991
SspMI CTAG 4 cut(s) 129, 224, 702, 734
StyD4I CCNGG 5 cut(s) 513, 726, 823, 952, 1219
StyI CCWWGG 2 cut(s) 11, 480
TaaI ACNGT 4 cut(s) 351, 458, 854, 1064
TaiI ACGT 1 cut(s) 246
TaqI TCGA 1 cut(s) 143
TasI AATT 1 cut(s) 705
TatI WGTACW 1 cut(s) 1192
TfiI GAWTC 2 cut(s) 437, 1108
Tru1I TTAA 1 cut(s) 162
Tru9I TTAA 1 cut(s) 162
TscAI CASTG 4 cut(s) 354, 450, 463, 1069
TseFI GTSAC 1 cut(s) 43
TseI GCWGC 3 cut(s) 24, 518, 1010
Tsp45I GTSAC 1 cut(s) 43
TspDTI ATGAA 3 cut(s) 315, 408, 644
TspRI CASTG 4 cut(s) 354, 450, 463, 1069
Van91I CCANNNNNTGG 1 cut(s) 308
XceI RCATGY 1 cut(s) 625
XspI CTAG 4 cut(s) 129, 224, 702, 734
ZrmI AGTACT 1 cut(s) 1194
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.