Rmu_sc0010543.1_g000005

Oxidation resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0010543.1
OG0001099
Physical Location & Seq
Forward (+)
18322 .. 20627
2306 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0010543.1_g000005.1.cds

Sequence Viewer

Length: 948 bp
atgaggttggtgttctcctcgtctacaatcgctcaaaagaagtcaggtcaagctgtagcaaaattggagccaaacaacatgaacgctgagcagggcgtccaaatcagagacatgggtaggccaaggagtcttcgcaacaaatcggcccactttgtgactgatatcactactggattgctcaaccccatttctgacaaaccctccaaaccctctccttctcctcctcctgaagatgtggatgggtccaaaggaagtcaaaatggaacaatgagtgaagagagtccagctaatccagttgatgggcctgacacttcttcatttactgcatttctctactcactgttatcgtcatcagagtcgggagataagagcaaaagttcggatgaacaggttgatgaccaaatggataagagcaactcattatctgattctgcagtgaaagcaaacagtgggaagagaagcttattttccaagggggaacacacgcgtagtatagctatgtaccaggctgcaagatttggttggcatcggagtcaagagcggaagggtaaccttgacgtgaaaggtgatgatgggaatgactctgagtttactggagttgagatgaggcatatgcataaagcacagaagcctgtggctttggttcatctaccagacgtctccgtaccttctttacttcttactgagaaaaatagaattgctctttacagttcactcccagcgctagttcagggaagtcaatggttgttactatctagtacatggaggcatggcatatcactttcaaccctatacagaagaagtgtgctttggcctggcctcagtttgttggttgttggagactgtaaaggtgcagtttttggtggcttggtggaggcacctctaagaccaaccaacaagaagtatcgggtcctgctgaagcagatacatccttatgactccatctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TLD

Protein Analysis

315

Amino Acids

34.35

Weight (kDa)

9.26

Isoelectric Point (pI)

50.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 660
AccB1I GGYRCC 1 cut(s) 877
AccB7I CCANNNNNTGG 1 cut(s) 299
AccBSI CCGCTC 1 cut(s) 541
AccI GTMKAC 1 cut(s) 23
AccII CGCG 1 cut(s) 487
AciI CCGC 1 cut(s) 541
AcuI CTGAAG 2 cut(s) 249, 938
AcyI GRCGYC 2 cut(s) 96, 657
AdeI CACNNNGTG 1 cut(s) 154
AfaI GTAC 3 cut(s) 503, 666, 760
AfeI AGCGCT 1 cut(s) 723
AfiI CCNNNNNNNGG 1 cut(s) 299
AflIII ACRYGT 1 cut(s) 485
AgsI TTSAA 1 cut(s) 786
AjiI CACGTC 1 cut(s) 559
AjnI CCWGG 2 cut(s) 504, 814
AjuI GAANNNNNNNTTGG 2 cut(s) 793, 825
AluBI AGCT 4 cut(s) 53, 287, 462, 497
AluI AGCT 4 cut(s) 53, 287, 462, 497
Alw26I GTCTC 3 cut(s) 102, 664, 834
Aor51HI AGCGCT 1 cut(s) 723
AoxI GGCC 5 cut(s) 119, 144, 302, 812, 817
ApeKI GCWGC 1 cut(s) 509
AspLEI GCGC 1 cut(s) 724
AspS9I GGNCC 4 cut(s) 145, 243, 302, 910
AsuHPI GGTGA 1 cut(s) 578
AvaII GGWCC 2 cut(s) 243, 910
BanI GGYRCC 1 cut(s) 877
BbsI GAAGAC 1 cut(s) 122
BbvI GCAGC 1 cut(s) 496
BccI CCATC 3 cut(s) 233, 293, 566
BciT130I CCWGG 2 cut(s) 506, 816
BcoDI GTCTC 3 cut(s) 102, 664, 834
BfaI CTAG 3 cut(s) 725, 756, 946
BfmI CTRYAG 2 cut(s) 54, 432
BfoI RGCGCY 1 cut(s) 725
BisI GCNGC 1 cut(s) 510
BlpI GCTNAGC 1 cut(s) 87
BlsI GCNGC 1 cut(s) 511
Bme1390I CCNGG 2 cut(s) 506, 816
Bme18I GGWCC 2 cut(s) 243, 910
BmgBI CACGTC 1 cut(s) 559
BmgT120I GGNCC 4 cut(s) 145, 243, 302, 910
BmiI GGNNCC 4 cut(s) 69, 244, 879, 911
BmrFI CCNGG 2 cut(s) 506, 816
BmsI GCATC 1 cut(s) 535
BpiI GAAGAC 1 cut(s) 122
BpmI CTGGAG 1 cut(s) 615
Bpu1102I GCTNAGC 1 cut(s) 87
BsaHI GRCGYC 2 cut(s) 96, 657
BsaJI CCNNGG 2 cut(s) 122, 471
BsaXI ACNNNNNCTCC 2 cut(s) 185, 215
Bsc4I CCNNNNNNNGG 1 cut(s) 299
Bse1I ACTGG 3 cut(s) 175, 293, 598
BseBI CCWGG 2 cut(s) 506, 816
BseDI CCNNGG 2 cut(s) 122, 471
BseGI GGATG 3 cut(s) 244, 388, 928
BseLI CCNNNNNNNGG 1 cut(s) 299
BseMII CTCAG 4 cut(s) 78, 576, 675, 835
BseNI ACTGG 3 cut(s) 175, 293, 598
BseRI GAGGAG 3 cut(s) 7, 210, 213
BseXI GCAGC 1 cut(s) 496
BseYI CCCAGC 1 cut(s) 718
BsgI GTGCAG 1 cut(s) 873
Bsh1236I CGCG 1 cut(s) 487
BshFI GGCC 5 cut(s) 121, 146, 304, 814, 819
BshNI GGYRCC 1 cut(s) 877
BslI CCNNNNNNNGG 1 cut(s) 299
BsmAI GTCTC 3 cut(s) 102, 664, 834
BsmBI CGTCTC 1 cut(s) 664
BsnI GGCC 5 cut(s) 121, 146, 304, 814, 819
Bsp1720I GCTNAGC 1 cut(s) 87
BspACI CCGC 1 cut(s) 541
BspANI GGCC 5 cut(s) 121, 146, 304, 814, 819
BspCNI CTCAG 4 cut(s) 79, 577, 676, 834
BspFNI CGCG 1 cut(s) 487
BspLI GGNNCC 4 cut(s) 69, 244, 879, 911
BspMAI CTGCAG 1 cut(s) 436
BspT107I GGYRCC 1 cut(s) 877
BsrBI CCGCTC 1 cut(s) 541
BsrI ACTGG 3 cut(s) 175, 293, 598
BssECI CCNNGG 2 cut(s) 122, 471
BssNI GRCGYC 2 cut(s) 96, 657
BssT1I CCWWGG 2 cut(s) 122, 471
Bst2UI CCWGG 2 cut(s) 506, 816
Bst4CI ACNGT 4 cut(s) 342, 449, 710, 845
Bst6I CTCTTC 2 cut(s) 270, 449
BstACI GRCGYC 2 cut(s) 96, 657
BstDEI CTNAG 5 cut(s) 87, 585, 684, 821, 884
BstEII GGTNACC 1 cut(s) 548
BstF5I GGATG 3 cut(s) 244, 388, 928
BstFNI CGCG 1 cut(s) 487
BstH2I RGCGCY 1 cut(s) 725
BstHHI GCGC 1 cut(s) 724
BstMAI GTCTC 3 cut(s) 102, 664, 834
BstMWI GCNNNNNNNGC 1 cut(s) 440
BstNI CCWGG 2 cut(s) 506, 816
BstPI GGTNACC 1 cut(s) 548
BstSCI CCNGG 2 cut(s) 504, 814
BstSFI CTRYAG 2 cut(s) 54, 432
BstUI CGCG 1 cut(s) 487
BstV1I GCAGC 1 cut(s) 496
BstV2I GAAGAC 1 cut(s) 122
BsuRI GGCC 5 cut(s) 121, 146, 304, 814, 819
BtrI CACGTC 1 cut(s) 559
BtsCI GGATG 3 cut(s) 244, 388, 928
BtsI GCAGTG 1 cut(s) 441
BtsIMutI CAGTG 3 cut(s) 338, 441, 454
CfoI GCGC 1 cut(s) 724
Cfr13I GGNCC 4 cut(s) 145, 243, 302, 910
CseI GACGC 1 cut(s) 85
Csp6I GTAC 3 cut(s) 502, 665, 759
CviAII CATG 4 cut(s) 79, 112, 762, 770
CviQI GTAC 3 cut(s) 502, 665, 759
DdeI CTNAG 5 cut(s) 87, 585, 684, 821, 884
DraIII CACNNNGTG 1 cut(s) 154
Eam1104I CTCTTC 2 cut(s) 270, 449
EarI CTCTTC 2 cut(s) 270, 449
Eco130I CCWWGG 2 cut(s) 122, 471
Eco32I GATATC 1 cut(s) 163
Eco47I GGWCC 2 cut(s) 243, 910
Eco47III AGCGCT 1 cut(s) 723
Eco57I CTGAAG 2 cut(s) 249, 938
Eco91I GGTNACC 1 cut(s) 548
EcoO109I RGGNCCY 1 cut(s) 910
EcoO65I GGTNACC 1 cut(s) 548
EcoRII CCWGG 2 cut(s) 504, 814
EcoRV GATATC 1 cut(s) 163
EcoT14I CCWWGG 2 cut(s) 122, 471
EcoT22I ATGCAT 1 cut(s) 618
ErhI CCWWGG 2 cut(s) 122, 471
Esp3I CGTCTC 1 cut(s) 664
FaeI CATG 4 cut(s) 82, 115, 765, 773
FalI AAGNNNNNCTT 2 cut(s) 446, 478
FatI CATG 4 cut(s) 78, 111, 761, 769
FauNDI CATATG 1 cut(s) 612
FblI GTMKAC 1 cut(s) 23
Fnu4HI GCNGC 1 cut(s) 510
FokI GGATG 3 cut(s) 251, 395, 915
Fsp4HI GCNGC 1 cut(s) 510
FspBI CTAG 3 cut(s) 725, 756, 946
GlaI GCGC 1 cut(s) 723
GluI GCNGC 1 cut(s) 510
GsaI CCCAGC 1 cut(s) 722
GsuI CTGGAG 1 cut(s) 615
HaeII RGCGCY 1 cut(s) 725
HaeIII GGCC 5 cut(s) 121, 146, 304, 814, 819
HgaI GACGC 1 cut(s) 85
HhaI GCGC 1 cut(s) 724
Hin1I GRCGYC 2 cut(s) 96, 657
Hin1II CATG 4 cut(s) 82, 115, 765, 773
Hin6I GCGC 1 cut(s) 722
HinP1I GCGC 1 cut(s) 722
HindIII AAGCTT 1 cut(s) 460
HinfI GANTC 7 cut(s) 127, 280, 356, 428, 532, 581, 938
HphI GGTGA 1 cut(s) 578
Hpy166II GTNNAC 3 cut(s) 24, 591, 713
Hpy188I TCNGA 7 cut(s) 107, 193, 355, 382, 427, 531, 586
Hpy188III TCNNGA 3 cut(s) 227, 360, 536
Hpy8I GTNNAC 3 cut(s) 24, 591, 713
HpyAV CCTTC 3 cut(s) 225, 538, 678
HpyCH4III ACNGT 4 cut(s) 342, 449, 710, 845
HpyCH4IV ACGT 2 cut(s) 558, 657
HpyCH4V TGCA 5 cut(s) 326, 434, 512, 616, 854
HpyF10VI GCNNNNNNNGC 1 cut(s) 440
HpyF3I CTNAG 5 cut(s) 87, 585, 684, 821, 884
HpySE526I ACGT 2 cut(s) 558, 657
Hsp92I GRCGYC 2 cut(s) 96, 657
Hsp92II CATG 4 cut(s) 82, 115, 765, 773
HspAI GCGC 1 cut(s) 722
LmnI GCTCC 1 cut(s) 67
Lsp1109I GCAGC 1 cut(s) 496
LweI GCATC 1 cut(s) 535
MaeI CTAG 3 cut(s) 725, 756, 946
MaeII ACGT 2 cut(s) 558, 657
MaeIII GTNAC 3 cut(s) 154, 548, 747
MbiI CCGCTC 1 cut(s) 541
MboII GAAGA 6 cut(s) 122, 242, 287, 306, 466, 810
MluCI AATT 2 cut(s) 62, 696
MluI ACGCGT 1 cut(s) 485
MlyI GAGTC 6 cut(s) 136, 289, 365, 541, 575, 932
MmeI TCCRAC 1 cut(s) 817
Mph1103I ATGCAT 1 cut(s) 618
MslI CAYNNNNRTG 1 cut(s) 933
MspR9I CCNGG 2 cut(s) 506, 816
MvaI CCWGG 2 cut(s) 506, 816
MvnI CGCG 1 cut(s) 487
MwoI GCNNNNNNNGC 1 cut(s) 440
NdeI CATATG 1 cut(s) 612
NlaIII CATG 4 cut(s) 82, 115, 765, 773
NlaIV GGNNCC 4 cut(s) 69, 244, 879, 911
NmuCI GTSAC 1 cut(s) 154
NsiI ATGCAT 1 cut(s) 618
PfeI GAWTC 1 cut(s) 428
PflMI CCANNNNNTGG 1 cut(s) 299
PkrI GCNGC 1 cut(s) 511
PleI GAGTC 6 cut(s) 135, 288, 364, 540, 575, 932
PpsI GAGTC 6 cut(s) 135, 288, 364, 540, 575, 932
PpuMI RGGWCCY 1 cut(s) 910
Psp5II RGGWCCY 1 cut(s) 910
Psp6I CCWGG 2 cut(s) 504, 814
PspEI GGTNACC 1 cut(s) 548
PspFI CCCAGC 1 cut(s) 718
PspGI CCWGG 2 cut(s) 504, 814
PspN4I GGNNCC 4 cut(s) 69, 244, 879, 911
PspPI GGNCC 4 cut(s) 145, 243, 302, 910
PspPPI RGGWCCY 1 cut(s) 910
PstI CTGCAG 1 cut(s) 436
RsaI GTAC 3 cut(s) 503, 666, 760
RsaNI GTAC 3 cut(s) 502, 665, 759
RseI CAYNNNNRTG 1 cut(s) 933
SatI GCNGC 1 cut(s) 510
Sau96I GGNCC 4 cut(s) 145, 243, 302, 910
SchI GAGTC 6 cut(s) 136, 289, 365, 541, 575, 932
ScrFI CCNGG 2 cut(s) 506, 816
SfaNI GCATC 1 cut(s) 535
SfcI CTRYAG 2 cut(s) 54, 432
SinI GGWCC 2 cut(s) 243, 910
SmiMI CAYNNNNRTG 1 cut(s) 933
Sse9I AATT 2 cut(s) 62, 696
SsiI CCGC 1 cut(s) 541
SspMI CTAG 3 cut(s) 725, 756, 946
StyD4I CCNGG 2 cut(s) 504, 814
StyI CCWWGG 2 cut(s) 122, 471
TaaI ACNGT 4 cut(s) 342, 449, 710, 845
TaiI ACGT 2 cut(s) 561, 660
TasI AATT 2 cut(s) 62, 696
TatI WGTACW 1 cut(s) 758
TfiI GAWTC 1 cut(s) 428
TscAI CASTG 3 cut(s) 345, 441, 454
TseFI GTSAC 1 cut(s) 154
TseI GCWGC 1 cut(s) 509
Tsp45I GTSAC 1 cut(s) 154
TspDTI ATGAA 4 cut(s) 95, 306, 399, 635
TspGWI ACGGA 1 cut(s) 652
TspRI CASTG 3 cut(s) 345, 441, 454
Van91I CCANNNNNTGG 1 cut(s) 299
VpaK11BI GGWCC 2 cut(s) 243, 910
XmiI GTMKAC 1 cut(s) 23
XspI CTAG 3 cut(s) 725, 756, 946
ZraI GACGTC 1 cut(s) 658
Zsp2I ATGCAT 1 cut(s) 618
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.