RchiOBHm_Chr2g0113891

Oxidation resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0001099
Physical Location & Seq
Reverse (-)
25987847 .. 25989508
1662 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ48720

Sequence Viewer

Length: 972 bp
ATGGGTAGGGCAAAGAGTCTTCACAGCAAAGCGGCCCACTTTGTGACTGATATCACTACTGGATTGCTCAACCCCATTTCTGACAAACCCTCCAAACACTCTCCCTTCTCCTCCTCCTGTAAGCTCTCTATCTTTCTTTACTCAAAACCCTTTCTGGGTTTTAAGAGTTCTTTATTGGGTGCCAAAACCCATCTCTCTGATGTGCCAAAGATTAGGACTTTTCTAGGTTCTGGAGCTGTGGGTGCAAAACCCGGTTCTTCATTTAGCTGTATAGATGAAGTAGAAGATGTGGATGGGTCCAGAGGAAGTCAAAATGGAACAATGAGTGAAGAGAGTCCAGCTAATCCGGTTGACGGGCCTGACGCTTCTTCATTTACTGCATTTCTCTACTCACTGTTATCGTCGTCAGAGTCGGGAGATAAGAGCAAAAGTTCGGATCAACAGGTTGATGACCAAATGGATAAGCCCGACTCGTTGTCTGATTCTGCAGTGAAAGCAAACAGTGGGAAGAGAAGCTTGTTTTCCAAGGGGAAACACACGCTTAGTAAAGCTATGTACCAGGCTGCAAGATTTGGTGGGTATCGGAGTCAAGAGCGGAAGGGTAACCTTGATGTGAAAGGTGATGATGCGAATGACTCTGAGTTTACTGGAGTTGAGATGAGGCATATGCATAAAGCACAGAAGCCTGTGGCCTCGGTTCATTTGCCAGACATCTCTGAACCGTCTTTACTTCTTACTGAGAAAACTAGAATTGTTCTTTACAGTTCACTCCCGGCGCTAGTTCAGGGAAGACAATGGTTGTTACTATATAGTACATGGAGGCATGGCATATCACTTTCAACCCTATACAGAAGAAGTTGTTGGAGACCGTTAAGGTGCAGTTTTTGGTTGCTTGGTGGAGGCACCTCGAAGACCCACAAACAAGAAGTCTCAGGTCCTGCTGAAGCAAATACATCCTATGAATCCATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TLD

Protein Analysis

323

Amino Acids

35.06

Weight (kDa)

9.11

Isoelectric Point (pI)

45.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TLD PF07534 239 - 285 5.4e-06 TLDc domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 179, 902
AccBSI CCGCTC 1 cut(s) 595
AciI CCGC 2 cut(s) 32, 595
AclWI GGATC 1 cut(s) 444
AcuI CTGAAG 1 cut(s) 963
AdeI CACNNNGTG 1 cut(s) 43
AfaI GTAC 2 cut(s) 557, 814
AfiI CCNNNNNNNGG 2 cut(s) 155, 353
AgsI TTSAA 1 cut(s) 840
AhdI GACNNNNNGTC 1 cut(s) 475
AjnI CCWGG 1 cut(s) 558
AjuI GAANNNNNNNTTGG 2 cut(s) 844, 876
AluBI AGCT 6 cut(s) 124, 236, 267, 341, 516, 551
AluI AGCT 6 cut(s) 124, 236, 267, 341, 516, 551
Alw26I GTCTC 2 cut(s) 859, 934
AlwI GGATC 1 cut(s) 444
AlwNI CAGNNNCTG 1 cut(s) 938
AoxI GGCC 3 cut(s) 33, 356, 690
ApeKI GCWGC 1 cut(s) 563
ArsI GACNNNNNNTTYG 2 cut(s) 912, 944
AspLEI GCGC 1 cut(s) 778
AspS9I GGNCC 4 cut(s) 34, 297, 356, 935
AsuC2I CCSGG 2 cut(s) 252, 773
AsuHPI GGTGA 1 cut(s) 632
AvaII GGWCC 2 cut(s) 297, 935
BanI GGYRCC 2 cut(s) 179, 902
BbsI GAAGAC 3 cut(s) 11, 796, 917
BbvI GCAGC 1 cut(s) 550
BccI CCATC 2 cut(s) 198, 287
BciT130I CCWGG 1 cut(s) 560
BcnI CCSGG 2 cut(s) 252, 773
BcoDI GTCTC 2 cut(s) 859, 934
BfaI CTAG 4 cut(s) 224, 747, 779, 970
BfmI CTRYAG 1 cut(s) 486
BfoI RGCGCY 1 cut(s) 779
BisI GCNGC 2 cut(s) 33, 564
BlsI GCNGC 2 cut(s) 34, 565
Bme1390I CCNGG 3 cut(s) 252, 560, 773
Bme18I GGWCC 2 cut(s) 297, 935
BmeRI GACNNNNNGTC 1 cut(s) 475
BmgT120I GGNCC 4 cut(s) 34, 297, 356, 935
BmiI GGNNCC 3 cut(s) 181, 298, 904
BmrFI CCNGG 3 cut(s) 252, 560, 773
BmsI GCATC 1 cut(s) 616
BpiI GAAGAC 3 cut(s) 11, 796, 917
BpmI CTGGAG 2 cut(s) 252, 669
BpuMI CCSGG 2 cut(s) 252, 773
BsaI GGTCTC 1 cut(s) 859
BsaJI CCNNGG 2 cut(s) 525, 693
BsaWI WCCGGW 1 cut(s) 346
BsaXI ACNNNNNCTCC 2 cut(s) 74, 104
Bsc4I CCNNNNNNNGG 2 cut(s) 155, 353
Bse1I ACTGG 2 cut(s) 64, 652
BseBI CCWGG 1 cut(s) 560
BseDI CCNNGG 2 cut(s) 525, 693
BseGI GGATG 2 cut(s) 298, 953
BseLI CCNNNNNNNGG 2 cut(s) 155, 353
BseMII CTCAG 3 cut(s) 630, 729, 945
BseNI ACTGG 2 cut(s) 64, 652
BseRI GAGGAG 2 cut(s) 100, 103
BseXI GCAGC 1 cut(s) 550
BsgI GTGCAG 1 cut(s) 898
BshFI GGCC 3 cut(s) 35, 358, 692
BshNI GGYRCC 2 cut(s) 179, 902
BsiSI CCGG 3 cut(s) 252, 347, 773
BslI CCNNNNNNNGG 2 cut(s) 155, 353
BsmAI GTCTC 2 cut(s) 859, 934
BsnI GGCC 3 cut(s) 35, 358, 692
Bso31I GGTCTC 1 cut(s) 859
Bsp143I GATC 1 cut(s) 436
BspACI CCGC 2 cut(s) 32, 595
BspANI GGCC 3 cut(s) 35, 358, 692
BspCNI CTCAG 3 cut(s) 631, 730, 944
BspLI GGNNCC 3 cut(s) 181, 298, 904
BspMAI CTGCAG 1 cut(s) 490
BspPI GGATC 1 cut(s) 444
BspT107I GGYRCC 2 cut(s) 179, 902
BspTNI GGTCTC 1 cut(s) 859
BsrBI CCGCTC 1 cut(s) 595
BsrI ACTGG 2 cut(s) 64, 652
BssECI CCNNGG 2 cut(s) 525, 693
BssMI GATC 1 cut(s) 436
BssT1I CCWWGG 1 cut(s) 525
Bst2UI CCWGG 1 cut(s) 560
Bst4CI ACNGT 5 cut(s) 396, 503, 723, 764, 870
Bst6I CTCTTC 2 cut(s) 324, 503
BstDEI CTNAG 4 cut(s) 542, 639, 738, 931
BstEII GGTNACC 1 cut(s) 602
BstF5I GGATG 2 cut(s) 298, 953
BstH2I RGCGCY 1 cut(s) 779
BstHHI GCGC 1 cut(s) 778
BstKTI GATC 1 cut(s) 439
BstMAI GTCTC 2 cut(s) 859, 934
BstMBI GATC 1 cut(s) 436
BstMWI GCNNNNNNNGC 2 cut(s) 242, 494
BstNI CCWGG 1 cut(s) 560
BstPI GGTNACC 1 cut(s) 602
BstSCI CCNGG 3 cut(s) 250, 558, 771
BstSFI CTRYAG 1 cut(s) 486
BstV1I GCAGC 1 cut(s) 550
BstV2I GAAGAC 3 cut(s) 11, 796, 917
BsuRI GGCC 3 cut(s) 35, 358, 692
BtsCI GGATG 2 cut(s) 298, 953
BtsI GCAGTG 1 cut(s) 495
BtsIMutI CAGTG 3 cut(s) 392, 495, 508
CaiI CAGNNNCTG 1 cut(s) 938
CfoI GCGC 1 cut(s) 778
Cfr13I GGNCC 4 cut(s) 34, 297, 356, 935
CseI GACGC 1 cut(s) 371
Csp6I GTAC 2 cut(s) 556, 813
CviAII CATG 2 cut(s) 816, 824
CviQI GTAC 2 cut(s) 556, 813
DdeI CTNAG 4 cut(s) 542, 639, 738, 931
DpnI GATC 1 cut(s) 438
DpnII GATC 1 cut(s) 436
DraIII CACNNNGTG 1 cut(s) 43
DriI GACNNNNNGTC 1 cut(s) 475
Eam1104I CTCTTC 2 cut(s) 324, 503
Eam1105I GACNNNNNGTC 1 cut(s) 475
EarI CTCTTC 2 cut(s) 324, 503
Eco130I CCWWGG 1 cut(s) 525
Eco31I GGTCTC 1 cut(s) 859
Eco32I GATATC 1 cut(s) 52
Eco47I GGWCC 2 cut(s) 297, 935
Eco57I CTGAAG 1 cut(s) 963
Eco91I GGTNACC 1 cut(s) 602
EcoO109I RGGNCCY 1 cut(s) 935
EcoO65I GGTNACC 1 cut(s) 602
EcoRII CCWGG 1 cut(s) 558
EcoRV GATATC 1 cut(s) 52
EcoT14I CCWWGG 1 cut(s) 525
EcoT22I ATGCAT 1 cut(s) 672
ErhI CCWWGG 1 cut(s) 525
FaeI CATG 2 cut(s) 819, 827
FalI AAGNNNNNCTT 2 cut(s) 500, 532
FatI CATG 2 cut(s) 815, 823
FauNDI CATATG 1 cut(s) 666
Fnu4HI GCNGC 2 cut(s) 33, 564
FokI GGATG 2 cut(s) 305, 940
Fsp4HI GCNGC 2 cut(s) 33, 564
FspBI CTAG 4 cut(s) 224, 747, 779, 970
GlaI GCGC 1 cut(s) 777
GluI GCNGC 2 cut(s) 33, 564
GsuI CTGGAG 2 cut(s) 252, 669
HaeII RGCGCY 1 cut(s) 779
HaeIII GGCC 3 cut(s) 35, 358, 692
HapII CCGG 3 cut(s) 252, 347, 773
HgaI GACGC 1 cut(s) 371
HhaI GCGC 1 cut(s) 778
Hin1II CATG 2 cut(s) 819, 827
Hin6I GCGC 1 cut(s) 776
HinP1I GCGC 1 cut(s) 776
HincII GTYRAC 1 cut(s) 352
HindII GTYRAC 1 cut(s) 352
HindIII AAGCTT 1 cut(s) 514
HinfI GANTC 8 cut(s) 16, 334, 410, 470, 482, 586, 635, 962
HpaII CCGG 3 cut(s) 252, 347, 773
HphI GGTGA 1 cut(s) 632
Hpy166II GTNNAC 3 cut(s) 352, 645, 767
Hpy188I TCNGA 8 cut(s) 82, 199, 409, 436, 481, 585, 640, 718
Hpy188III TCNNGA 4 cut(s) 231, 300, 414, 590
Hpy8I GTNNAC 3 cut(s) 352, 645, 767
Hpy99I CGWCG 1 cut(s) 406
HpyAV CCTTC 2 cut(s) 115, 592
HpyCH4III ACNGT 5 cut(s) 396, 503, 723, 764, 870
HpyCH4V TGCA 6 cut(s) 245, 380, 488, 566, 670, 879
HpyF10VI GCNNNNNNNGC 2 cut(s) 242, 494
HpyF3I CTNAG 4 cut(s) 542, 639, 738, 931
Hsp92II CATG 2 cut(s) 819, 827
HspAI GCGC 1 cut(s) 776
Kzo9I GATC 1 cut(s) 436
LmnI GCTCC 1 cut(s) 233
Lsp1109I GCAGC 1 cut(s) 550
LweI GCATC 1 cut(s) 616
MaeI CTAG 4 cut(s) 224, 747, 779, 970
MaeIII GTNAC 3 cut(s) 43, 602, 801
MalI GATC 1 cut(s) 438
MbiI CCGCTC 1 cut(s) 595
MboI GATC 1 cut(s) 436
MboII GAAGA 9 cut(s) 11, 249, 296, 341, 360, 520, 801, 864, 922
MluCI AATT 1 cut(s) 750
MlyI GAGTC 6 cut(s) 25, 343, 419, 464, 595, 629
MmeI TCCRAC 1 cut(s) 842
MnlI CCTC 9 cut(s) 100, 121, 124, 296, 654, 703, 813, 893, 916
Mph1103I ATGCAT 1 cut(s) 672
MseI TTAA 2 cut(s) 162, 872
MspI CCGG 3 cut(s) 252, 347, 773
MspR9I CCNGG 3 cut(s) 252, 560, 773
MvaI CCWGG 1 cut(s) 560
MwoI GCNNNNNNNGC 2 cut(s) 242, 494
NciI CCSGG 2 cut(s) 252, 773
NdeI CATATG 1 cut(s) 666
NdeII GATC 1 cut(s) 436
NlaIII CATG 2 cut(s) 819, 827
NlaIV GGNNCC 3 cut(s) 181, 298, 904
NmuCI GTSAC 1 cut(s) 43
NsiI ATGCAT 1 cut(s) 672
PfeI GAWTC 2 cut(s) 482, 962
PkrI GCNGC 2 cut(s) 34, 565
PleI GAGTC 6 cut(s) 24, 342, 418, 464, 594, 629
PpsI GAGTC 6 cut(s) 24, 342, 418, 464, 594, 629
PpuMI RGGWCCY 1 cut(s) 935
Psp5II RGGWCCY 1 cut(s) 935
Psp6I CCWGG 1 cut(s) 558
PspEI GGTNACC 1 cut(s) 602
PspGI CCWGG 1 cut(s) 558
PspN4I GGNNCC 3 cut(s) 181, 298, 904
PspPI GGNCC 4 cut(s) 34, 297, 356, 935
PspPPI RGGWCCY 1 cut(s) 935
PsrI GAACNNNNNNTAC 2 cut(s) 711, 743
PstI CTGCAG 1 cut(s) 490
PstNI CAGNNNCTG 1 cut(s) 938
RsaI GTAC 2 cut(s) 557, 814
RsaNI GTAC 2 cut(s) 556, 813
SaqAI TTAA 2 cut(s) 162, 872
SatI GCNGC 2 cut(s) 33, 564
Sau3AI GATC 1 cut(s) 436
Sau96I GGNCC 4 cut(s) 34, 297, 356, 935
SchI GAGTC 6 cut(s) 25, 343, 419, 464, 595, 629
ScrFI CCNGG 3 cut(s) 252, 560, 773
SfaNI GCATC 1 cut(s) 616
SfcI CTRYAG 1 cut(s) 486
SinI GGWCC 2 cut(s) 297, 935
Sse9I AATT 1 cut(s) 750
SsiI CCGC 2 cut(s) 32, 595
SspMI CTAG 4 cut(s) 224, 747, 779, 970
StyD4I CCNGG 3 cut(s) 250, 558, 771
StyI CCWWGG 1 cut(s) 525
TaaI ACNGT 5 cut(s) 396, 503, 723, 764, 870
TaqI TCGA 1 cut(s) 908
TasI AATT 1 cut(s) 750
TatI WGTACW 1 cut(s) 812
TauI GCSGC 1 cut(s) 35
TfiI GAWTC 2 cut(s) 482, 962
Tru1I TTAA 2 cut(s) 162, 872
Tru9I TTAA 2 cut(s) 162, 872
TscAI CASTG 3 cut(s) 399, 495, 508
TseFI GTSAC 1 cut(s) 43
TseI GCWGC 1 cut(s) 563
Tsp45I GTSAC 1 cut(s) 43
TspDTI ATGAA 4 cut(s) 249, 291, 360, 689
TspRI CASTG 3 cut(s) 399, 495, 508
VpaK11BI GGWCC 2 cut(s) 297, 935
XspI CTAG 4 cut(s) 224, 747, 779, 970
Zsp2I ATGCAT 1 cut(s) 672
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.