Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000881.1

Orthogroup ID

OG0001099

Physical Location & Seq

Genomic Coordinates Forward (+)

62109 .. 63855

Gene Structure 1747 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000881.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 876 bp

ctggattgctcaaccccatttctgacaaaccctccaaaccttctcccttctcctcctcctgaagatgtggatgggtccagaggaagtcaaaatggaacaatgagtgaagagagtccagctaatccagttgatgggcctgacacttcttcatttactgcatttctctactcactgttatcatcatcagagtcgggagataagagcaaaagttcggatgaacaggttgatgaccaaatggataagagcaactcattgtctgattctgcagtgaaagcaaacagtgggaagggaagcttgttttccaaggggaaacacacgcttaggaaagctatgtaccaggctgcaagatttggtgggtatcggagtcaagagcggaagggtaaccttgatgtgaaaggtgatgatgggaatgactctgagtttactggagttgagatgaggcatatgcataaagcacagaagcctgtggctttggttcatctaccagacgtctccgaaccttctttacttcttactgaggaaaatagaattgctctttacagttcactcccagcgctagttcagggcagacaatggttgttactatatagtacatggaggcatggcatatcactttcaaccctatacataagaagtatgctttggcctggcctcagtttgctggttattggagaccgtaaaggtgcagtttttggtggcttggtggaggcacctctaagaccaaccaacaagaagtatcagggaacaaatgatacatttgttttcacaaatacacctgaccatcctgttatatatcgccctacaggtacaaatttatcctctttccttcctagggatacacagtgtctgatttatcatcaatttttcactgcctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TLD

Protein Analysis

291

Amino Acids

31.92

Weight (kDa)

6.19

Isoelectric Point (pI)

40.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001099)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39870 AT4G39870
fragaria_vesca	FvH4_1g20920 FvH4_1g20920 FvH4_1g20920 FvH4_1g20920 FvH4_1g20920 FvH4_1g20920 FvH4_1g20920
malus_domestica	MD15G1324300.v1.1
prunus_persica	Prupe.6G186700_v2.0.a1 Prupe.6G186700_v2.0.a1 Prupe.6G186700_v2.0.a1
pyrus_communis	pycom15g28620
rosa_chinensis	RchiOBHm_Chr2g0113781 RchiOBHm_Chr2g0113881 RchiOBHm_Chr2g0113891 RchiOBHm_Chr2g0113971 RchiOBHm_Chr2g0114361 RchiOBHm_Chr2g0114391
rosa_laevigata	RLG00000018083 RLG00000018090 RLG00000018093 RLG00000018098
rosa_multiflora	Rmu_sc0000431.1_g000017 Rmu_sc0000431.1_g000031 Rmu_sc0000881.1_g000009 Rmu_sc0009639.1_g000003 Rmu_sc0010543.1_g000005 Rmu_sc0016457.1_g000001
rosa_roxburghii	Rroxscaffold_2G00128310 Rroxscaffold_2G00130120
rosa_rugosa	Rorug02G0188800 Rorug02G0189600 Rorug02G0190200
rosa_samantha	Rh1BG230200 Rh2CG248400 Rh2CG248700 Rh2CG249200 Rh2CG250600 Rh2CG250800 Rh2DG250900 Rh2DG251100 Rh2DG251600 Rh2DG251700 Rh2DG251800 Rh2DG252300 Rh2DG252700 Rh2DG253900 Rh2DG254000 Rh2DG254500 Rh2DG255100
rosa_wichuraiana	Rw2G018480 Rw2G019000 Rw2G019070 Rw2G019140 Rw2G019170 Rw2G019210 Rw6G015390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	492
AccB1I	GGYRCC	1 cut(s)	709
AccB7I	CCANNNNNTGG	1 cut(s)	131
AccBSI	CCGCTC	1 cut(s)	373
AciI	CCGC	1 cut(s)	373
AcsI	RAATTY	1 cut(s)	811
AcuI	CTGAAG	1 cut(s)	81
AcyI	GRCGYC	1 cut(s)	489
AfaI	GTAC	3 cut(s)	335, 592, 808
AfeI	AGCGCT	1 cut(s)	555
AfiI	CCNNNNNNNGG	2 cut(s)	131, 832
AgsI	TTSAA	1 cut(s)	618
AjnI	CCWGG	2 cut(s)	336, 646
AjuI	GAANNNNNNNTTGG	2 cut(s)	625, 657
AluBI	AGCT	3 cut(s)	119, 294, 329
AluI	AGCT	3 cut(s)	119, 294, 329
Alw26I	GTCTC	2 cut(s)	496, 666
AlwNI	CAGNNNCTG	1 cut(s)	847
Aor51HI	AGCGCT	1 cut(s)	555
AoxI	GGCC	3 cut(s)	134, 644, 649
ApeKI	GCWGC	1 cut(s)	341
ApoI	RAATTY	1 cut(s)	811
AspA2I	CCTAGG	1 cut(s)	830
AspLEI	GCGC	1 cut(s)	556
AspS9I	GGNCC	2 cut(s)	75, 134
AsuHPI	GGTGA	1 cut(s)	410
AvaII	GGWCC	1 cut(s)	75
AvrII	CCTAGG	1 cut(s)	830
BaeI	ACNNNNGTAYC	2 cut(s)	744, 777
BanI	GGYRCC	1 cut(s)	709
BbvI	GCAGC	1 cut(s)	328
BccI	CCATC	4 cut(s)	65, 125, 398, 789
BciT130I	CCWGG	2 cut(s)	338, 648
BciVI	GTATCC	1 cut(s)	829
BcoDI	GTCTC	2 cut(s)	496, 666
BfaI	CTAG	3 cut(s)	557, 831, 874
BfmI	CTRYAG	2 cut(s)	264, 801
BfoI	RGCGCY	1 cut(s)	557
BfuI	GTATCC	1 cut(s)	829
BisI	GCNGC	1 cut(s)	342
BlnI	CCTAGG	1 cut(s)	830
BlsI	GCNGC	1 cut(s)	343
Bme1390I	CCNGG	2 cut(s)	338, 648
Bme18I	GGWCC	1 cut(s)	75
BmgT120I	GGNCC	2 cut(s)	75, 134
BmiI	GGNNCC	2 cut(s)	76, 711
BmrFI	CCNGG	2 cut(s)	338, 648
BpmI	CTGGAG	1 cut(s)	447
Bpu10I	CCTNAGC	1 cut(s)	320
BsaHI	GRCGYC	1 cut(s)	489
BsaI	GGTCTC	1 cut(s)	666
BsaJI	CCNNGG	2 cut(s)	303, 830
BsaXI	ACNNNNNCTCC	2 cut(s)	16, 46
Bsc4I	CCNNNNNNNGG	2 cut(s)	131, 832
Bse1I	ACTGG	2 cut(s)	125, 430
BseBI	CCWGG	2 cut(s)	338, 648
BseDI	CCNNGG	2 cut(s)	303, 830
BseGI	GGATG	3 cut(s)	76, 220, 781
BseLI	CCNNNNNNNGG	2 cut(s)	131, 832
BseMII	CTCAG	3 cut(s)	408, 507, 667
BseNI	ACTGG	2 cut(s)	125, 430
BseRI	GAGGAG	2 cut(s)	42, 45
BseXI	GCAGC	1 cut(s)	328
BseYI	CCCAGC	1 cut(s)	550
BsgI	GTGCAG	1 cut(s)	705
BshFI	GGCC	3 cut(s)	136, 646, 651
BshNI	GGYRCC	1 cut(s)	709
BslI	CCNNNNNNNGG	2 cut(s)	131, 832
BsmAI	GTCTC	2 cut(s)	496, 666
BsmBI	CGTCTC	1 cut(s)	496
BsnI	GGCC	3 cut(s)	136, 646, 651
Bso31I	GGTCTC	1 cut(s)	666
BspACI	CCGC	1 cut(s)	373
BspANI	GGCC	3 cut(s)	136, 646, 651
BspCNI	CTCAG	3 cut(s)	409, 508, 666
BspLI	GGNNCC	2 cut(s)	76, 711
BspMAI	CTGCAG	1 cut(s)	268
BspT107I	GGYRCC	1 cut(s)	709
BspTNI	GGTCTC	1 cut(s)	666
BsrBI	CCGCTC	1 cut(s)	373
BsrI	ACTGG	2 cut(s)	125, 430
BssECI	CCNNGG	2 cut(s)	303, 830
BssNI	GRCGYC	1 cut(s)	489
BssT1I	CCWWGG	2 cut(s)	303, 830
Bst2UI	CCWGG	2 cut(s)	338, 648
Bst4CI	ACNGT	5 cut(s)	174, 281, 542, 677, 843
Bst6I	CTCTTC	1 cut(s)	102
BstACI	GRCGYC	1 cut(s)	489
BstDEI	CTNAG	5 cut(s)	320, 417, 516, 653, 716
BstEII	GGTNACC	1 cut(s)	380
BstF5I	GGATG	3 cut(s)	76, 220, 781
BstH2I	RGCGCY	1 cut(s)	557
BstHHI	GCGC	1 cut(s)	556
BstMAI	GTCTC	2 cut(s)	496, 666
BstMWI	GCNNNNNNNGC	1 cut(s)	272
BstNI	CCWGG	2 cut(s)	338, 648
BstPI	GGTNACC	1 cut(s)	380
BstSCI	CCNGG	2 cut(s)	336, 646
BstSFI	CTRYAG	2 cut(s)	264, 801
BstV1I	GCAGC	1 cut(s)	328
BsuI	GTATCC	1 cut(s)	829
BsuRI	GGCC	3 cut(s)	136, 646, 651
BtsCI	GGATG	3 cut(s)	76, 220, 781
BtsI	GCAGTG	2 cut(s)	273, 867
BtsIMutI	CAGTG	5 cut(s)	170, 273, 286, 848, 867
CaiI	CAGNNNCTG	1 cut(s)	847
CfoI	GCGC	1 cut(s)	556
Cfr13I	GGNCC	2 cut(s)	75, 134
Csp6I	GTAC	3 cut(s)	334, 591, 807
CviAII	CATG	2 cut(s)	594, 602
CviQI	GTAC	3 cut(s)	334, 591, 807
DdeI	CTNAG	5 cut(s)	320, 417, 516, 653, 716
Eam1104I	CTCTTC	1 cut(s)	102
EarI	CTCTTC	1 cut(s)	102
Eco130I	CCWWGG	2 cut(s)	303, 830
Eco31I	GGTCTC	1 cut(s)	666
Eco47I	GGWCC	1 cut(s)	75
Eco47III	AGCGCT	1 cut(s)	555
Eco57I	CTGAAG	1 cut(s)	81
Eco91I	GGTNACC	1 cut(s)	380
EcoO65I	GGTNACC	1 cut(s)	380
EcoRII	CCWGG	2 cut(s)	336, 646
EcoT14I	CCWWGG	2 cut(s)	303, 830
EcoT22I	ATGCAT	1 cut(s)	450
ErhI	CCWWGG	2 cut(s)	303, 830
Esp3I	CGTCTC	1 cut(s)	496
FaeI	CATG	2 cut(s)	597, 605
FalI	AAGNNNNNCTT	2 cut(s)	278, 310
FatI	CATG	2 cut(s)	593, 601
FauNDI	CATATG	1 cut(s)	444
Fnu4HI	GCNGC	1 cut(s)	342
FokI	GGATG	3 cut(s)	83, 227, 768
Fsp4HI	GCNGC	1 cut(s)	342
FspBI	CTAG	3 cut(s)	557, 831, 874
GlaI	GCGC	1 cut(s)	555
GluI	GCNGC	1 cut(s)	342
GsaI	CCCAGC	1 cut(s)	554
GsuI	CTGGAG	1 cut(s)	447
HaeII	RGCGCY	1 cut(s)	557
HaeIII	GGCC	3 cut(s)	136, 646, 651
HhaI	GCGC	1 cut(s)	556
Hin1I	GRCGYC	1 cut(s)	489
Hin1II	CATG	2 cut(s)	597, 605
Hin6I	GCGC	1 cut(s)	554
HinP1I	GCGC	1 cut(s)	554
HindIII	AAGCTT	1 cut(s)	292
HinfI	GANTC	5 cut(s)	112, 188, 260, 364, 413
HphI	GGTGA	1 cut(s)	410
Hpy166II	GTNNAC	2 cut(s)	423, 545
Hpy188I	TCNGA	8 cut(s)	24, 187, 214, 259, 363, 418, 496, 849
Hpy188III	TCNNGA	4 cut(s)	59, 78, 192, 368
Hpy8I	GTNNAC	2 cut(s)	423, 545
HpyAV	CCTTC	6 cut(s)	50, 57, 280, 370, 510, 836
HpyCH4III	ACNGT	5 cut(s)	174, 281, 542, 677, 843
HpyCH4IV	ACGT	1 cut(s)	489
HpyCH4V	TGCA	5 cut(s)	158, 266, 344, 448, 686
HpyF10VI	GCNNNNNNNGC	1 cut(s)	272
HpyF3I	CTNAG	5 cut(s)	320, 417, 516, 653, 716
HpySE526I	ACGT	1 cut(s)	489
Hsp92I	GRCGYC	1 cut(s)	489
Hsp92II	CATG	2 cut(s)	597, 605
HspAI	GCGC	1 cut(s)	554
Lsp1109I	GCAGC	1 cut(s)	328
MaeI	CTAG	3 cut(s)	557, 831, 874
MaeII	ACGT	1 cut(s)	489
MaeIII	GTNAC	2 cut(s)	380, 579
MbiI	CCGCTC	1 cut(s)	373
MboII	GAAGA	3 cut(s)	74, 119, 138
MluCI	AATT	3 cut(s)	528, 811, 860
MlyI	GAGTC	4 cut(s)	121, 197, 373, 407
Mph1103I	ATGCAT	1 cut(s)	450
MspR9I	CCNGG	2 cut(s)	338, 648
MvaI	CCWGG	2 cut(s)	338, 648
MwoI	GCNNNNNNNGC	1 cut(s)	272
NdeI	CATATG	1 cut(s)	444
NlaIII	CATG	2 cut(s)	597, 605
NlaIV	GGNNCC	2 cut(s)	76, 711
NsiI	ATGCAT	1 cut(s)	450
PfeI	GAWTC	1 cut(s)	260
PflMI	CCANNNNNTGG	1 cut(s)	131
PkrI	GCNGC	1 cut(s)	343
PleI	GAGTC	4 cut(s)	120, 196, 372, 407
PpsI	GAGTC	4 cut(s)	120, 196, 372, 407
Psp6I	CCWGG	2 cut(s)	336, 646
PspEI	GGTNACC	1 cut(s)	380
PspFI	CCCAGC	1 cut(s)	550
PspGI	CCWGG	2 cut(s)	336, 646
PspN4I	GGNNCC	2 cut(s)	76, 711
PspPI	GGNCC	2 cut(s)	75, 134
PsrI	GAACNNNNNNTAC	4 cut(s)	489, 521, 736, 768
PstI	CTGCAG	1 cut(s)	268
PstNI	CAGNNNCTG	1 cut(s)	847
RsaI	GTAC	3 cut(s)	335, 592, 808
RsaNI	GTAC	3 cut(s)	334, 591, 807
SatI	GCNGC	1 cut(s)	342
Sau96I	GGNCC	2 cut(s)	75, 134
SchI	GAGTC	4 cut(s)	121, 197, 373, 407
ScrFI	CCNGG	2 cut(s)	338, 648
SfcI	CTRYAG	2 cut(s)	264, 801
SinI	GGWCC	1 cut(s)	75
Sse9I	AATT	3 cut(s)	528, 811, 860
SsiI	CCGC	1 cut(s)	373
SspMI	CTAG	3 cut(s)	557, 831, 874
StyD4I	CCNGG	2 cut(s)	336, 646
StyI	CCWWGG	2 cut(s)	303, 830
TaaI	ACNGT	5 cut(s)	174, 281, 542, 677, 843
TaiI	ACGT	1 cut(s)	492
TasI	AATT	3 cut(s)	528, 811, 860
TatI	WGTACW	1 cut(s)	590
TfiI	GAWTC	1 cut(s)	260
TscAI	CASTG	5 cut(s)	177, 273, 286, 848, 874
TseI	GCWGC	1 cut(s)	341
TspDTI	ATGAA	3 cut(s)	138, 231, 467
TspRI	CASTG	5 cut(s)	177, 273, 286, 848, 874
Van91I	CCANNNNNTGG	1 cut(s)	131
VpaK11BI	GGWCC	1 cut(s)	75
XapI	RAATTY	1 cut(s)	811
XmaJI	CCTAGG	1 cut(s)	830
XspI	CTAG	3 cut(s)	557, 831, 874
ZraI	GACGTC	1 cut(s)	490
Zsp2I	ATGCAT	1 cut(s)	450

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.