Rh2DG252300

Oxidation resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0001099
Physical Location & Seq
Reverse (-)
26133531 .. 26134325
795 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG252300.1

Sequence Viewer

Length: 387 bp
ATGAGGCATATGCATAAAGCACAGAAGCCTGTGGCTTTGGTTCATCTACCAGACGTCTCCGTACCTTCTTTACTTCTTACTGAGAAAAATAGAATTGCTCTTTACAGTTCACTCCCAGCGCTAGTTCAGGGAAGTCAATGGTTGTTACTATCTAGTACATGGAGGCATGGCATATCACTTTCAACCCTATACAGAAGAAGTGTGCTTTGGCCTGGCCTCAGTTTGTTGGTTGTTGGAGACTGTAAAGGTGCAGTTTTTGGTGGCTTGGTGGAGGCACCTCTAAGACCAACCAACAAGAAGTATCGGGTCCTGCTGAAGCAGATACATCCTTATGACTCCATCTGGCAATTATTTCCTTTTATAAATGTATTCACGCTGGTGTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TLD

Protein Analysis

128

Amino Acids

14.49

Weight (kDa)

10.23

Isoelectric Point (pI)

50.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TLD PF07534 21 - 101 1.5e-11 TLDc domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 362
AatII GACGTC 1 cut(s) 57
AccB1I GGYRCC 1 cut(s) 274
AcuI CTGAAG 1 cut(s) 335
AcyI GRCGYC 1 cut(s) 54
AfaI GTAC 2 cut(s) 63, 157
AfeI AGCGCT 1 cut(s) 120
AgsI TTSAA 1 cut(s) 183
AjnI CCWGG 1 cut(s) 211
AjuI GAANNNNNNNTTGG 2 cut(s) 190, 222
AleI CACNNNNGTG 1 cut(s) 377
Alw26I GTCTC 2 cut(s) 61, 231
Aor51HI AGCGCT 1 cut(s) 120
AoxI GGCC 2 cut(s) 209, 214
AspLEI GCGC 1 cut(s) 121
AspS9I GGNCC 1 cut(s) 307
AvaII GGWCC 1 cut(s) 307
BanI GGYRCC 1 cut(s) 274
BccI CCATC 1 cut(s) 347
BciT130I CCWGG 1 cut(s) 213
BcoDI GTCTC 2 cut(s) 61, 231
BfaI CTAG 2 cut(s) 122, 153
BfoI RGCGCY 1 cut(s) 122
Bme1390I CCNGG 1 cut(s) 213
Bme18I GGWCC 1 cut(s) 307
BmgT120I GGNCC 1 cut(s) 307
BmiI GGNNCC 2 cut(s) 276, 308
BmrFI CCNGG 1 cut(s) 213
BsaHI GRCGYC 1 cut(s) 54
BseBI CCWGG 1 cut(s) 213
BseGI GGATG 1 cut(s) 325
BseMII CTCAG 2 cut(s) 72, 232
BseYI CCCAGC 1 cut(s) 115
BsgI GTGCAG 1 cut(s) 270
BshFI GGCC 2 cut(s) 211, 216
BshNI GGYRCC 1 cut(s) 274
BsmAI GTCTC 2 cut(s) 61, 231
BsmBI CGTCTC 1 cut(s) 61
BsnI GGCC 2 cut(s) 211, 216
BspANI GGCC 2 cut(s) 211, 216
BspCNI CTCAG 2 cut(s) 73, 231
BspLI GGNNCC 2 cut(s) 276, 308
BspT107I GGYRCC 1 cut(s) 274
BssNI GRCGYC 1 cut(s) 54
Bst2UI CCWGG 1 cut(s) 213
Bst4CI ACNGT 2 cut(s) 107, 242
BstACI GRCGYC 1 cut(s) 54
BstDEI CTNAG 3 cut(s) 81, 218, 281
BstF5I GGATG 1 cut(s) 325
BstH2I RGCGCY 1 cut(s) 122
BstHHI GCGC 1 cut(s) 121
BstMAI GTCTC 2 cut(s) 61, 231
BstNI CCWGG 1 cut(s) 213
BstSCI CCNGG 1 cut(s) 211
BsuRI GGCC 2 cut(s) 211, 216
BtsCI GGATG 1 cut(s) 325
CfoI GCGC 1 cut(s) 121
Cfr13I GGNCC 1 cut(s) 307
Csp6I GTAC 2 cut(s) 62, 156
CviAII CATG 2 cut(s) 159, 167
CviJI RGCY 5 cut(s) 28, 35, 211, 216, 264
CviKI_1 RGCY 5 cut(s) 28, 35, 211, 216, 264
CviQI GTAC 2 cut(s) 62, 156
DdeI CTNAG 3 cut(s) 81, 218, 281
Eco47I GGWCC 1 cut(s) 307
Eco47III AGCGCT 1 cut(s) 120
Eco57I CTGAAG 1 cut(s) 335
EcoO109I RGGNCCY 1 cut(s) 307
EcoRII CCWGG 1 cut(s) 211
EcoT22I ATGCAT 1 cut(s) 15
Esp3I CGTCTC 1 cut(s) 61
FaeI CATG 2 cut(s) 162, 170
FaiI YATR 9 cut(s) 9, 11, 15, 160, 168, 173, 190, 333, 362
FatI CATG 2 cut(s) 158, 166
FauNDI CATATG 1 cut(s) 9
FokI GGATG 1 cut(s) 312
FspBI CTAG 2 cut(s) 122, 153
GlaI GCGC 1 cut(s) 120
GsaI CCCAGC 1 cut(s) 119
HaeII RGCGCY 1 cut(s) 122
HaeIII GGCC 2 cut(s) 211, 216
HhaI GCGC 1 cut(s) 121
Hin1I GRCGYC 1 cut(s) 54
Hin1II CATG 2 cut(s) 162, 170
Hin6I GCGC 1 cut(s) 119
HinP1I GCGC 1 cut(s) 119
HinfI GANTC 1 cut(s) 335
Hpy166II GTNNAC 1 cut(s) 110
Hpy8I GTNNAC 1 cut(s) 110
HpyAV CCTTC 1 cut(s) 75
HpyCH4III ACNGT 2 cut(s) 107, 242
HpyCH4IV ACGT 1 cut(s) 54
HpyCH4V TGCA 2 cut(s) 13, 251
HpyF3I CTNAG 3 cut(s) 81, 218, 281
HpySE526I ACGT 1 cut(s) 54
Hsp92I GRCGYC 1 cut(s) 54
Hsp92II CATG 2 cut(s) 162, 170
HspAI GCGC 1 cut(s) 119
LpnPI CCDG 9 cut(s) 42, 63, 113, 129, 198, 225, 323, 328, 362
MaeI CTAG 2 cut(s) 122, 153
MaeII ACGT 1 cut(s) 54
MaeIII GTNAC 1 cut(s) 144
MboII GAAGA 1 cut(s) 207
MluCI AATT 2 cut(s) 93, 347
MlyI GAGTC 1 cut(s) 329
MmeI TCCRAC 1 cut(s) 214
MnlI CCTC 4 cut(s) 156, 227, 265, 288
Mph1103I ATGCAT 1 cut(s) 15
MslI CAYNNNNRTG 2 cut(s) 330, 377
MspR9I CCNGG 1 cut(s) 213
MvaI CCWGG 1 cut(s) 213
NdeI CATATG 1 cut(s) 9
NlaIII CATG 2 cut(s) 162, 170
NlaIV GGNNCC 2 cut(s) 276, 308
NsiI ATGCAT 1 cut(s) 15
OliI CACNNNNGTG 1 cut(s) 377
PleI GAGTC 1 cut(s) 329
PpsI GAGTC 1 cut(s) 329
PpuMI RGGWCCY 1 cut(s) 307
PsiI TTATAA 1 cut(s) 362
Psp5II RGGWCCY 1 cut(s) 307
Psp6I CCWGG 1 cut(s) 211
PspFI CCCAGC 1 cut(s) 115
PspGI CCWGG 1 cut(s) 211
PspN4I GGNNCC 2 cut(s) 276, 308
PspPI GGNCC 1 cut(s) 307
PspPPI RGGWCCY 1 cut(s) 307
RsaI GTAC 2 cut(s) 63, 157
RsaNI GTAC 2 cut(s) 62, 156
RseI CAYNNNNRTG 2 cut(s) 330, 377
Sau96I GGNCC 1 cut(s) 307
SchI GAGTC 1 cut(s) 329
ScrFI CCNGG 1 cut(s) 213
SetI ASST 4 cut(s) 57, 67, 250, 280
SinI GGWCC 1 cut(s) 307
SmiMI CAYNNNNRTG 2 cut(s) 330, 377
Sse9I AATT 2 cut(s) 93, 347
SspMI CTAG 2 cut(s) 122, 153
StyD4I CCNGG 1 cut(s) 211
TaaI ACNGT 2 cut(s) 107, 242
TaiI ACGT 1 cut(s) 57
TasI AATT 2 cut(s) 93, 347
TatI WGTACW 1 cut(s) 155
TspDTI ATGAA 1 cut(s) 32
TspGWI ACGGA 1 cut(s) 49
VpaK11BI GGWCC 1 cut(s) 307
XspI CTAG 2 cut(s) 122, 153
ZraI GACGTC 1 cut(s) 55
Zsp2I ATGCAT 1 cut(s) 15
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.