Rh2DG253900

Oxidation resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0001099
Physical Location & Seq
Reverse (-)
26555658 .. 26555981
324 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG253900.1

Sequence Viewer

Length: 324 bp
ATGGATAAGAGCAACTCATTGTCTGATTCTGCAGTGAAAGCAAACAGTGGGAAGAGAAGCTTGTTTTCCAAGGGGAAACACACGCTTAGTAAAGCTATGTACCAGGCTGCAAGATTTGGTGGATATCGGAGTCAAGAGCGGAAGGGTAACCTTGACGTGAAACGTGATGATGGGAATGACTCTGAGTTTACTGGAGTTGAGATGAGGCATATGCATAAAGCACAGAAGCCTGTGGCTTTGGTTCATCTACCAGACGTCTCCGTACCTTCTTTACTTCTTACTGAGAAAAAAGAATTGCTCTTTACAGTTCACTCCCAGCGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TLD

Protein Analysis

107

Amino Acids

11.96

Weight (kDa)

9.87

Isoelectric Point (pI)

44.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 258
AccBSI CCGCTC 1 cut(s) 139
AciI CCGC 1 cut(s) 139
AcyI GRCGYC 1 cut(s) 255
AfaI GTAC 2 cut(s) 101, 264
AfeI AGCGCT 1 cut(s) 320
AjiI CACGTC 1 cut(s) 157
AjnI CCWGG 1 cut(s) 102
AluBI AGCT 2 cut(s) 60, 95
AluI AGCT 2 cut(s) 60, 95
Alw26I GTCTC 1 cut(s) 262
Aor51HI AGCGCT 1 cut(s) 320
ApeKI GCWGC 1 cut(s) 107
AspLEI GCGC 1 cut(s) 321
BbvI GCAGC 1 cut(s) 94
BccI CCATC 1 cut(s) 164
BciT130I CCWGG 1 cut(s) 104
BcoDI GTCTC 1 cut(s) 262
BfaI CTAG 1 cut(s) 322
BfmI CTRYAG 1 cut(s) 30
BfoI RGCGCY 1 cut(s) 322
BisI GCNGC 1 cut(s) 108
BlsI GCNGC 1 cut(s) 109
Bme1390I CCNGG 1 cut(s) 104
BmgBI CACGTC 1 cut(s) 157
BmrFI CCNGG 1 cut(s) 104
BpmI CTGGAG 1 cut(s) 213
BsaHI GRCGYC 1 cut(s) 255
BsaJI CCNNGG 1 cut(s) 69
Bse1I ACTGG 1 cut(s) 196
BseBI CCWGG 1 cut(s) 104
BseDI CCNNGG 1 cut(s) 69
BseMII CTCAG 2 cut(s) 174, 273
BseNI ACTGG 1 cut(s) 196
BseXI GCAGC 1 cut(s) 94
BseYI CCCAGC 1 cut(s) 315
BsmAI GTCTC 1 cut(s) 262
BsmBI CGTCTC 1 cut(s) 262
BspACI CCGC 1 cut(s) 139
BspCNI CTCAG 2 cut(s) 175, 274
BspMAI CTGCAG 1 cut(s) 34
BsrBI CCGCTC 1 cut(s) 139
BsrI ACTGG 1 cut(s) 196
BssECI CCNNGG 1 cut(s) 69
BssNI GRCGYC 1 cut(s) 255
BssT1I CCWWGG 1 cut(s) 69
Bst2UI CCWGG 1 cut(s) 104
Bst4CI ACNGT 2 cut(s) 47, 307
Bst6I CTCTTC 1 cut(s) 47
BstACI GRCGYC 1 cut(s) 255
BstDEI CTNAG 3 cut(s) 86, 183, 282
BstEII GGTNACC 1 cut(s) 146
BstH2I RGCGCY 1 cut(s) 322
BstHHI GCGC 1 cut(s) 321
BstMAI GTCTC 1 cut(s) 262
BstMWI GCNNNNNNNGC 1 cut(s) 38
BstNI CCWGG 1 cut(s) 104
BstPI GGTNACC 1 cut(s) 146
BstSCI CCNGG 1 cut(s) 102
BstSFI CTRYAG 1 cut(s) 30
BstV1I GCAGC 1 cut(s) 94
BtrI CACGTC 1 cut(s) 157
BtsI GCAGTG 1 cut(s) 39
BtsIMutI CAGTG 2 cut(s) 39, 52
CfoI GCGC 1 cut(s) 321
Csp6I GTAC 2 cut(s) 100, 263
CviJI RGCY 5 cut(s) 60, 95, 107, 229, 236
CviKI_1 RGCY 5 cut(s) 60, 95, 107, 229, 236
CviQI GTAC 2 cut(s) 100, 263
DdeI CTNAG 3 cut(s) 86, 183, 282
Eam1104I CTCTTC 1 cut(s) 47
EarI CTCTTC 1 cut(s) 47
Eco130I CCWWGG 1 cut(s) 69
Eco32I GATATC 1 cut(s) 125
Eco47III AGCGCT 1 cut(s) 320
Eco91I GGTNACC 1 cut(s) 146
EcoO65I GGTNACC 1 cut(s) 146
EcoRII CCWGG 1 cut(s) 102
EcoRV GATATC 1 cut(s) 125
EcoT14I CCWWGG 1 cut(s) 69
EcoT22I ATGCAT 1 cut(s) 216
ErhI CCWWGG 1 cut(s) 69
Esp3I CGTCTC 1 cut(s) 262
FaiI YATR 4 cut(s) 98, 210, 212, 216
FalI AAGNNNNNCTT 2 cut(s) 44, 76
FauNDI CATATG 1 cut(s) 210
Fnu4HI GCNGC 1 cut(s) 108
Fsp4HI GCNGC 1 cut(s) 108
FspBI CTAG 1 cut(s) 322
GlaI GCGC 1 cut(s) 320
GluI GCNGC 1 cut(s) 108
GsaI CCCAGC 1 cut(s) 319
GsuI CTGGAG 1 cut(s) 213
HaeII RGCGCY 1 cut(s) 322
HhaI GCGC 1 cut(s) 321
Hin1I GRCGYC 1 cut(s) 255
Hin6I GCGC 1 cut(s) 319
HinP1I GCGC 1 cut(s) 319
HindIII AAGCTT 1 cut(s) 58
HinfI GANTC 3 cut(s) 26, 130, 179
Hpy166II GTNNAC 2 cut(s) 189, 310
Hpy188I TCNGA 3 cut(s) 25, 129, 184
Hpy188III TCNNGA 1 cut(s) 134
Hpy8I GTNNAC 2 cut(s) 189, 310
HpyAV CCTTC 2 cut(s) 136, 276
HpyCH4III ACNGT 2 cut(s) 47, 307
HpyCH4IV ACGT 3 cut(s) 156, 163, 255
HpyCH4V TGCA 3 cut(s) 32, 110, 214
HpyF10VI GCNNNNNNNGC 1 cut(s) 38
HpyF3I CTNAG 3 cut(s) 86, 183, 282
HpySE526I ACGT 3 cut(s) 156, 163, 255
Hsp92I GRCGYC 1 cut(s) 255
HspAI GCGC 1 cut(s) 319
LpnPI CCDG 5 cut(s) 89, 116, 177, 243, 264
Lsp1109I GCAGC 1 cut(s) 94
MaeI CTAG 1 cut(s) 322
MaeII ACGT 3 cut(s) 156, 163, 255
MaeIII GTNAC 1 cut(s) 146
MbiI CCGCTC 1 cut(s) 139
MboII GAAGA 1 cut(s) 64
MluCI AATT 1 cut(s) 293
MlyI GAGTC 2 cut(s) 139, 173
MnlI CCTC 1 cut(s) 198
Mph1103I ATGCAT 1 cut(s) 216
MspR9I CCNGG 1 cut(s) 104
MvaI CCWGG 1 cut(s) 104
MwoI GCNNNNNNNGC 1 cut(s) 38
NdeI CATATG 1 cut(s) 210
NsiI ATGCAT 1 cut(s) 216
PfeI GAWTC 1 cut(s) 26
PkrI GCNGC 1 cut(s) 109
PleI GAGTC 2 cut(s) 138, 173
PpsI GAGTC 2 cut(s) 138, 173
Psp6I CCWGG 1 cut(s) 102
PspEI GGTNACC 1 cut(s) 146
PspFI CCCAGC 1 cut(s) 315
PspGI CCWGG 1 cut(s) 102
PstI CTGCAG 1 cut(s) 34
RsaI GTAC 2 cut(s) 101, 264
RsaNI GTAC 2 cut(s) 100, 263
SatI GCNGC 1 cut(s) 108
SchI GAGTC 2 cut(s) 139, 173
ScrFI CCNGG 1 cut(s) 104
SetI ASST 7 cut(s) 62, 97, 153, 159, 166, 258, 268
SfcI CTRYAG 1 cut(s) 30
Sse9I AATT 1 cut(s) 293
SsiI CCGC 1 cut(s) 139
SspMI CTAG 1 cut(s) 322
StyD4I CCNGG 1 cut(s) 102
StyI CCWWGG 1 cut(s) 69
TaaI ACNGT 2 cut(s) 47, 307
TaiI ACGT 3 cut(s) 159, 166, 258
TasI AATT 1 cut(s) 293
TfiI GAWTC 1 cut(s) 26
TscAI CASTG 2 cut(s) 39, 52
TseI GCWGC 1 cut(s) 107
TspDTI ATGAA 1 cut(s) 233
TspGWI ACGGA 1 cut(s) 250
TspRI CASTG 2 cut(s) 39, 52
XspI CTAG 1 cut(s) 322
ZraI GACGTC 1 cut(s) 256
Zsp2I ATGCAT 1 cut(s) 216
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.