Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000431.1

Orthogroup ID

OG0001099

Physical Location & Seq

Genomic Coordinates Reverse (-)

166036 .. 168959

Gene Structure 2924 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000431.1_g000031.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

atgggtaggccaaggagtcttcgcagcaaagcggcccactttgtgactgatatcactactggattgctcaaccccatttctgacaaaccctccaaaccctctccttctcctcctcctgaagatgtggacgggtccagaggaagtcaaaatggaacaatgagtgaagagagtccagctaatccagttgatggacccgacacttcttcatttactgcatttctctactcactgttatcgtcatcagagtcgggagataagagcaaaagttcggatgaacaggttgatgaccaaatggataagagcaactcattgtctgattctgcagtgaaagcaaacagtgggaagagaagtttgttttctaaggggaaacacacgcttagtaaagctatgtaccaggctgcaagatttggtgggtatcggagtcaagagcggaagggtaaccttgatgtaaaaggtgatgatgggaatgactctgagttcgctggagttgagatgaggcatatgcagaaaccacaaaagcctgtggccttggttcatttgacagacatctctgaaccgtctttacttcttactgagaaaactagaattgctctttacagttcactcccggcgctagtacagggaagacgatggttgttactatataatacatggaggcatggcatatcactttcaaccctatacagaagaagtatgctttggcctggcctcagtttgctggttgttggagaccgtaaaggtgcagtttttggtggcttggtggaggcacctctaagaccaaccaacaagaagtatcagttatggggttttgtgtatgctactaagtatgaggaagtacttgctcaaagtcgtatggaggcacctgggatttgccgatggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TLD

Protein Analysis

293

Amino Acids

32.23

Weight (kDa)

9.35

Isoelectric Point (pI)

53.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001099)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39870 AT4G39870
fragaria_vesca	FvH4_1g20920 FvH4_1g20920 FvH4_1g20920 FvH4_1g20920 FvH4_1g20920 FvH4_1g20920 FvH4_1g20920
malus_domestica	MD15G1324300.v1.1
prunus_persica	Prupe.6G186700_v2.0.a1 Prupe.6G186700_v2.0.a1 Prupe.6G186700_v2.0.a1
pyrus_communis	pycom15g28620
rosa_chinensis	RchiOBHm_Chr2g0113781 RchiOBHm_Chr2g0113881 RchiOBHm_Chr2g0113891 RchiOBHm_Chr2g0113971 RchiOBHm_Chr2g0114361 RchiOBHm_Chr2g0114391
rosa_laevigata	RLG00000018083 RLG00000018090 RLG00000018093 RLG00000018098
rosa_multiflora	Rmu_sc0000431.1_g000017 Rmu_sc0000431.1_g000031 Rmu_sc0000881.1_g000009 Rmu_sc0009639.1_g000003 Rmu_sc0010543.1_g000005 Rmu_sc0016457.1_g000001
rosa_roxburghii	Rroxscaffold_2G00128310 Rroxscaffold_2G00130120
rosa_rugosa	Rorug02G0188800 Rorug02G0189600 Rorug02G0190200
rosa_samantha	Rh1BG230200 Rh2CG248400 Rh2CG248700 Rh2CG249200 Rh2CG250600 Rh2CG250800 Rh2DG250900 Rh2DG251100 Rh2DG251600 Rh2DG251700 Rh2DG251800 Rh2DG252300 Rh2DG252700 Rh2DG253900 Rh2DG254000 Rh2DG254500 Rh2DG255100
rosa_wichuraiana	Rw2G018480 Rw2G019000 Rw2G019070 Rw2G019140 Rw2G019170 Rw2G019210 Rw6G015390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	766, 859
AccB7I	CCANNNNNTGG	1 cut(s)	188
AccBSI	CCGCTC	1 cut(s)	430
AciI	CCGC	2 cut(s)	32, 430
AcuI	CTGAAG	1 cut(s)	138
AdeI	CACNNNGTG	1 cut(s)	43
AfaI	GTAC	3 cut(s)	392, 618, 837
AfiI	CCNNNNNNNGG	1 cut(s)	188
AgsI	TTSAA	1 cut(s)	675
AjnI	CCWGG	3 cut(s)	393, 703, 862
AjuI	GAANNNNNNNTTGG	2 cut(s)	682, 714
AluBI	AGCT	2 cut(s)	176, 386
AluI	AGCT	2 cut(s)	176, 386
Alw26I	GTCTC	1 cut(s)	723
AoxI	GGCC	5 cut(s)	8, 33, 525, 701, 706
ApeKI	GCWGC	2 cut(s)	24, 398
ArsI	GACNNNNNNTTYG	2 cut(s)	461, 493
AspLEI	GCGC	1 cut(s)	613
AspS9I	GGNCC	3 cut(s)	34, 132, 191
AsuC2I	CCSGG	1 cut(s)	608
AsuHPI	GGTGA	1 cut(s)	467
AvaII	GGWCC	2 cut(s)	132, 191
BanI	GGYRCC	2 cut(s)	766, 859
BbsI	GAAGAC	2 cut(s)	11, 631
BbvI	GCAGC	2 cut(s)	36, 385
BccI	CCATC	4 cut(s)	182, 455, 624, 870
BciT130I	CCWGG	3 cut(s)	395, 705, 864
BcnI	CCSGG	1 cut(s)	608
BcoDI	GTCTC	1 cut(s)	723
BfaI	CTAG	2 cut(s)	582, 614
BfmI	CTRYAG	1 cut(s)	321
BfoI	RGCGCY	1 cut(s)	614
BisI	GCNGC	3 cut(s)	25, 33, 399
BlsI	GCNGC	3 cut(s)	26, 34, 400
BmcAI	AGTACT	1 cut(s)	837
Bme1390I	CCNGG	4 cut(s)	395, 608, 705, 864
Bme18I	GGWCC	2 cut(s)	132, 191
BmgT120I	GGNCC	3 cut(s)	34, 132, 191
BmiI	GGNNCC	4 cut(s)	133, 193, 768, 861
BmrFI	CCNGG	4 cut(s)	395, 608, 705, 864
BpiI	GAAGAC	2 cut(s)	11, 631
BpmI	CTGGAG	1 cut(s)	504
BpuMI	CCSGG	1 cut(s)	608
BsaI	GGTCTC	1 cut(s)	723
BsaJI	CCNNGG	3 cut(s)	11, 528, 863
BsaXI	ACNNNNNCTCC	2 cut(s)	74, 104
Bsc4I	CCNNNNNNNGG	1 cut(s)	188
Bse1I	ACTGG	2 cut(s)	64, 182
BseBI	CCWGG	3 cut(s)	395, 705, 864
BseDI	CCNNGG	3 cut(s)	11, 528, 863
BseGI	GGATG	1 cut(s)	277
BseLI	CCNNNNNNNGG	1 cut(s)	188
BseMII	CTCAG	3 cut(s)	465, 564, 724
BseNI	ACTGG	2 cut(s)	64, 182
BseRI	GAGGAG	2 cut(s)	99, 102
BseXI	GCAGC	2 cut(s)	36, 385
BsgI	GTGCAG	1 cut(s)	762
BshFI	GGCC	5 cut(s)	10, 35, 527, 703, 708
BshNI	GGYRCC	2 cut(s)	766, 859
BsiSI	CCGG	1 cut(s)	608
BslI	CCNNNNNNNGG	1 cut(s)	188
BsmAI	GTCTC	1 cut(s)	723
BsnI	GGCC	5 cut(s)	10, 35, 527, 703, 708
Bso31I	GGTCTC	1 cut(s)	723
BspACI	CCGC	2 cut(s)	32, 430
BspANI	GGCC	5 cut(s)	10, 35, 527, 703, 708
BspCNI	CTCAG	3 cut(s)	466, 565, 723
BspLI	GGNNCC	4 cut(s)	133, 193, 768, 861
BspMAI	CTGCAG	1 cut(s)	325
BspT107I	GGYRCC	2 cut(s)	766, 859
BspTNI	GGTCTC	1 cut(s)	723
BsrBI	CCGCTC	1 cut(s)	430
BsrI	ACTGG	2 cut(s)	64, 182
BssECI	CCNNGG	3 cut(s)	11, 528, 863
BssT1I	CCWWGG	2 cut(s)	11, 528
Bst2UI	CCWGG	3 cut(s)	395, 705, 864
Bst4CI	ACNGT	5 cut(s)	231, 338, 558, 599, 734
Bst6I	CTCTTC	2 cut(s)	159, 338
BstDEI	CTNAG	7 cut(s)	360, 377, 474, 573, 710, 773, 822
BstEII	GGTNACC	1 cut(s)	437
BstF5I	GGATG	1 cut(s)	277
BstH2I	RGCGCY	1 cut(s)	614
BstHHI	GCGC	1 cut(s)	613
BstMAI	GTCTC	1 cut(s)	723
BstMWI	GCNNNNNNNGC	1 cut(s)	329
BstNI	CCWGG	3 cut(s)	395, 705, 864
BstPI	GGTNACC	1 cut(s)	437
BstSCI	CCNGG	4 cut(s)	393, 606, 703, 862
BstSFI	CTRYAG	1 cut(s)	321
BstV1I	GCAGC	2 cut(s)	36, 385
BstV2I	GAAGAC	2 cut(s)	11, 631
BsuRI	GGCC	5 cut(s)	10, 35, 527, 703, 708
BtsCI	GGATG	1 cut(s)	277
BtsI	GCAGTG	1 cut(s)	330
BtsIMutI	CAGTG	3 cut(s)	227, 330, 343
CfoI	GCGC	1 cut(s)	613
Cfr13I	GGNCC	3 cut(s)	34, 132, 191
Csp6I	GTAC	3 cut(s)	391, 617, 836
CviAII	CATG	2 cut(s)	651, 659
CviQI	GTAC	3 cut(s)	391, 617, 836
DdeI	CTNAG	7 cut(s)	360, 377, 474, 573, 710, 773, 822
DraIII	CACNNNGTG	1 cut(s)	43
Eam1104I	CTCTTC	2 cut(s)	159, 338
EarI	CTCTTC	2 cut(s)	159, 338
Eco130I	CCWWGG	2 cut(s)	11, 528
Eco31I	GGTCTC	1 cut(s)	723
Eco32I	GATATC	1 cut(s)	52
Eco47I	GGWCC	2 cut(s)	132, 191
Eco57I	CTGAAG	1 cut(s)	138
Eco91I	GGTNACC	1 cut(s)	437
EcoO65I	GGTNACC	1 cut(s)	437
EcoRII	CCWGG	3 cut(s)	393, 703, 862
EcoRV	GATATC	1 cut(s)	52
EcoT14I	CCWWGG	2 cut(s)	11, 528
ErhI	CCWWGG	2 cut(s)	11, 528
FaeI	CATG	2 cut(s)	654, 662
FatI	CATG	2 cut(s)	650, 658
FauNDI	CATATG	1 cut(s)	501
Fnu4HI	GCNGC	3 cut(s)	25, 33, 399
FokI	GGATG	1 cut(s)	284
Fsp4HI	GCNGC	3 cut(s)	25, 33, 399
FspBI	CTAG	2 cut(s)	582, 614
GlaI	GCGC	1 cut(s)	612
GluI	GCNGC	3 cut(s)	25, 33, 399
GsuI	CTGGAG	1 cut(s)	504
HaeII	RGCGCY	1 cut(s)	614
HaeIII	GGCC	5 cut(s)	10, 35, 527, 703, 708
HapII	CCGG	1 cut(s)	608
HhaI	GCGC	1 cut(s)	613
Hin1II	CATG	2 cut(s)	654, 662
Hin6I	GCGC	1 cut(s)	611
HinP1I	GCGC	1 cut(s)	611
HinfI	GANTC	6 cut(s)	16, 169, 245, 317, 421, 470
HpaII	CCGG	1 cut(s)	608
HphI	GGTGA	1 cut(s)	467
Hpy166II	GTNNAC	2 cut(s)	127, 602
Hpy188I	TCNGA	7 cut(s)	82, 244, 271, 316, 420, 475, 553
Hpy188III	TCNNGA	4 cut(s)	116, 135, 249, 425
Hpy8I	GTNNAC	2 cut(s)	127, 602
HpyAV	CCTTC	2 cut(s)	114, 427
HpyCH4III	ACNGT	5 cut(s)	231, 338, 558, 599, 734
HpyCH4V	TGCA	5 cut(s)	215, 323, 401, 505, 743
HpyF10VI	GCNNNNNNNGC	1 cut(s)	329
HpyF3I	CTNAG	7 cut(s)	360, 377, 474, 573, 710, 773, 822
Hsp92II	CATG	2 cut(s)	654, 662
HspAI	GCGC	1 cut(s)	611
Lsp1109I	GCAGC	2 cut(s)	36, 385
MaeI	CTAG	2 cut(s)	582, 614
MaeIII	GTNAC	3 cut(s)	43, 437, 636
MbiI	CCGCTC	1 cut(s)	430
MboII	GAAGA	7 cut(s)	11, 131, 176, 195, 355, 636, 699
MluCI	AATT	1 cut(s)	585
MlyI	GAGTC	5 cut(s)	25, 178, 254, 430, 464
MmeI	TCCRAC	1 cut(s)	706
MspI	CCGG	1 cut(s)	608
MspR9I	CCNGG	4 cut(s)	395, 608, 705, 864
MvaI	CCWGG	3 cut(s)	395, 705, 864
MwoI	GCNNNNNNNGC	1 cut(s)	329
NciI	CCSGG	1 cut(s)	608
NdeI	CATATG	1 cut(s)	501
NlaIII	CATG	2 cut(s)	654, 662
NlaIV	GGNNCC	4 cut(s)	133, 193, 768, 861
NmuCI	GTSAC	1 cut(s)	43
PfeI	GAWTC	1 cut(s)	317
PflMI	CCANNNNNTGG	1 cut(s)	188
PkrI	GCNGC	3 cut(s)	26, 34, 400
PleI	GAGTC	5 cut(s)	24, 177, 253, 429, 464
PpsI	GAGTC	5 cut(s)	24, 177, 253, 429, 464
Psp6I	CCWGG	3 cut(s)	393, 703, 862
PspEI	GGTNACC	1 cut(s)	437
PspGI	CCWGG	3 cut(s)	393, 703, 862
PspN4I	GGNNCC	4 cut(s)	133, 193, 768, 861
PspPI	GGNCC	3 cut(s)	34, 132, 191
PsrI	GAACNNNNNNTAC	2 cut(s)	546, 578
PstI	CTGCAG	1 cut(s)	325
RsaI	GTAC	3 cut(s)	392, 618, 837
RsaNI	GTAC	3 cut(s)	391, 617, 836
SatI	GCNGC	3 cut(s)	25, 33, 399
Sau96I	GGNCC	3 cut(s)	34, 132, 191
ScaI	AGTACT	1 cut(s)	837
SchI	GAGTC	5 cut(s)	25, 178, 254, 430, 464
ScrFI	CCNGG	4 cut(s)	395, 608, 705, 864
SetI	ASST	8 cut(s)	178, 282, 388, 444, 457, 742, 772, 865
SfcI	CTRYAG	1 cut(s)	321
SinI	GGWCC	2 cut(s)	132, 191
Sse9I	AATT	1 cut(s)	585
SsiI	CCGC	2 cut(s)	32, 430
SspMI	CTAG	2 cut(s)	582, 614
StyD4I	CCNGG	4 cut(s)	393, 606, 703, 862
StyI	CCWWGG	2 cut(s)	11, 528
TaaI	ACNGT	5 cut(s)	231, 338, 558, 599, 734
TasI	AATT	1 cut(s)	585
TatI	WGTACW	2 cut(s)	616, 835
TauI	GCSGC	1 cut(s)	35
TfiI	GAWTC	1 cut(s)	317
TscAI	CASTG	3 cut(s)	234, 330, 343
TseFI	GTSAC	1 cut(s)	43
TseI	GCWGC	2 cut(s)	24, 398
Tsp45I	GTSAC	1 cut(s)	43
TspDTI	ATGAA	3 cut(s)	195, 288, 524
TspRI	CASTG	3 cut(s)	234, 330, 343
Van91I	CCANNNNNTGG	1 cut(s)	188
VpaK11BI	GGWCC	2 cut(s)	132, 191
XspI	CTAG	2 cut(s)	582, 614
ZrmI	AGTACT	1 cut(s)	837

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.