Rw2G019070

Oxidation resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0001099
Physical Location & Seq
Reverse (-)
24983104 .. 24986378
3275 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G019070.1

Sequence Viewer

Length: 960 bp
ATGGGTAGGCCAGAGAGTCTTCGCAGCAAAGCGGCCCACTTTGTGATTTATATCACTACTGGATTGCTCAACCCCATTTCTGACAAACCCTCCGAACCTTCCCCTTCTCCTCCTCCTGGAGATAAGAGCAAAAGTTCGGATGAACAGGTTGATGACCAAATGGATAAGAGCAACTCATTGTCTGATTCTGCAGTGAAAGCAAACAGTGGGAAGAGAAGCTTGTTTTCCAAGGGGAAACACACGCTTAGTAAAGCTATGTACCAGGCTGCAAGATTTGGTGGGTATCGGAGTCAAGAGCGGAAGGGTAACCTTGATGTGAAAGGTGATGATGGGAATGACTCTGAGTTTACTGGAGTTGAGATGAGGCATATGCATAAAGCACAGAAGCCTGTGGCTTTGGTTCATCTACCAGACATCTCTGAACCTTCTTTACTTCTTACCGAGAAAAATAGAATTGCTCTTTACAGTTCACTCCCAGCGCTAGTTCAGGGAAGACAATGGTTGTTACTATATAGTACACAGAGGCATGGCATATCACTTTCAACCCTATACAGAAGAAGTATGCATTGGCCTGGCCTCAGTGCAGTTTTTGGTGGCTTGGTGGAGGCACCTCCAAGACCAACCAACAAGAAGTATCAGGGAACAAATGATACATTTGTTTTCACAAATACACCTGACCATCCTGTTATATATCGCCCTACAGGTGCCAACCGCTATTTCACATTGTGCGCTACTGACTTTTTAGCTATTGGTGGGGGTGGTCATTGTGCACTCTATTTGAACAGTGATCTATTGAGTGGATCAAGTTCAGTTTCAGAAACCTATTGGAATCCATGTCTTGCAAACTCAGAAGACTTTGATGTGAAAGAAGTAGAGTTATGGGGTTTTGTTTATTCTACCAAGTATGACGAAATACTTGCTCAAAGCCGTATGGAGGCACCTGGGATTTGTCGATGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TLD

Protein Analysis

319

Amino Acids

35.29

Weight (kDa)

8.23

Isoelectric Point (pI)

47.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TLD PF07534 140 - 296 5.6e-34 TLDc domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 607, 704, 937
AccBSI CCGCTC 1 cut(s) 298
AciI CCGC 3 cut(s) 32, 298, 712
AclWI GGATC 1 cut(s) 808
AdeI CACNNNGTG 2 cut(s) 43, 726
AfaI GTAC 2 cut(s) 260, 517
AfeI AGCGCT 1 cut(s) 480
AfiI CCNNNNNNNGG 2 cut(s) 116, 934
AgsI TTSAA 2 cut(s) 543, 781
AjnI CCWGG 4 cut(s) 115, 261, 571, 940
AjuI GAANNNNNNNTTGG 4 cut(s) 550, 582, 701, 733
AluBI AGCT 3 cut(s) 219, 254, 746
AluI AGCT 3 cut(s) 219, 254, 746
Alw21I GWGCWC 1 cut(s) 772
Alw44I GTGCAC 1 cut(s) 768
AlwI GGATC 1 cut(s) 808
Aor51HI AGCGCT 1 cut(s) 480
AoxI GGCC 4 cut(s) 8, 33, 569, 574
ApaLI GTGCAC 1 cut(s) 768
ApeKI GCWGC 2 cut(s) 24, 266
AspLEI GCGC 2 cut(s) 481, 731
AspS9I GGNCC 1 cut(s) 34
AsuHPI GGTGA 1 cut(s) 335
BaeGI GKGCMC 1 cut(s) 772
BaeI ACNNNNGTAYC 2 cut(s) 642, 675
BanI GGYRCC 3 cut(s) 607, 704, 937
BbsI GAAGAC 3 cut(s) 11, 499, 858
Bbv12I GWGCWC 1 cut(s) 772
BbvI GCAGC 2 cut(s) 36, 253
BccI CCATC 3 cut(s) 323, 687, 948
BceAI ACGGC 1 cut(s) 912
BcgI CGANNNNNNTGC 2 cut(s) 899, 933
BciT130I CCWGG 4 cut(s) 117, 263, 573, 942
BfaI CTAG 1 cut(s) 482
BfmI CTRYAG 2 cut(s) 189, 699
BfoI RGCGCY 1 cut(s) 482
BisI GCNGC 3 cut(s) 25, 33, 267
BlsI GCNGC 3 cut(s) 26, 34, 268
Bme1390I CCNGG 4 cut(s) 117, 263, 573, 942
BmgT120I GGNCC 1 cut(s) 34
BmiI GGNNCC 3 cut(s) 609, 706, 939
BmrFI CCNGG 4 cut(s) 117, 263, 573, 942
BpiI GAAGAC 3 cut(s) 11, 499, 858
BpmI CTGGAG 2 cut(s) 138, 372
BsaBI GATNNNNATC 1 cut(s) 50
BsaJI CCNNGG 2 cut(s) 228, 941
BsaXI ACNNNNNCTCC 2 cut(s) 74, 104
Bsc4I CCNNNNNNNGG 2 cut(s) 116, 934
Bse1I ACTGG 2 cut(s) 64, 355
Bse8I GATNNNNATC 1 cut(s) 50
BseBI CCWGG 4 cut(s) 117, 263, 573, 942
BseDI CCNNGG 2 cut(s) 228, 941
BseGI GGATG 2 cut(s) 145, 679
BseJI GATNNNNATC 1 cut(s) 50
BseLI CCNNNNNNNGG 2 cut(s) 116, 934
BseMII CTCAG 3 cut(s) 333, 592, 861
BseNI ACTGG 2 cut(s) 64, 355
BseRI GAGGAG 2 cut(s) 99, 102
BseSI GKGCMC 1 cut(s) 772
BseXI GCAGC 2 cut(s) 36, 253
BseYI CCCAGC 1 cut(s) 475
BsgI GTGCAG 1 cut(s) 603
BshFI GGCC 4 cut(s) 10, 35, 571, 576
BshNI GGYRCC 3 cut(s) 607, 704, 937
BsiHKAI GWGCWC 1 cut(s) 772
BslI CCNNNNNNNGG 2 cut(s) 116, 934
BsnI GGCC 4 cut(s) 10, 35, 571, 576
Bsp1286I GDGCHC 1 cut(s) 772
Bsp143I GATC 2 cut(s) 787, 800
BspACI CCGC 3 cut(s) 32, 298, 712
BspANI GGCC 4 cut(s) 10, 35, 571, 576
BspCNI CTCAG 3 cut(s) 334, 591, 860
BspLI GGNNCC 3 cut(s) 609, 706, 939
BspMAI CTGCAG 1 cut(s) 193
BspPI GGATC 1 cut(s) 808
BspT107I GGYRCC 3 cut(s) 607, 704, 937
BsrBI CCGCTC 1 cut(s) 298
BsrI ACTGG 2 cut(s) 64, 355
BssECI CCNNGG 2 cut(s) 228, 941
BssMI GATC 2 cut(s) 787, 800
BssT1I CCWWGG 1 cut(s) 228
Bst2UI CCWGG 4 cut(s) 117, 263, 573, 942
Bst4CI ACNGT 3 cut(s) 206, 467, 785
Bst6I CTCTTC 1 cut(s) 206
BstDEI CTNAG 4 cut(s) 245, 342, 578, 847
BstEII GGTNACC 1 cut(s) 305
BstF5I GGATG 2 cut(s) 145, 679
BstH2I RGCGCY 1 cut(s) 482
BstHHI GCGC 2 cut(s) 481, 731
BstKTI GATC 2 cut(s) 790, 803
BstMBI GATC 2 cut(s) 787, 800
BstMWI GCNNNNNNNGC 1 cut(s) 197
BstNI CCWGG 4 cut(s) 117, 263, 573, 942
BstPI GGTNACC 1 cut(s) 305
BstSCI CCNGG 4 cut(s) 115, 261, 571, 940
BstSFI CTRYAG 2 cut(s) 189, 699
BstSLI GKGCMC 1 cut(s) 772
BstV1I GCAGC 2 cut(s) 36, 253
BstV2I GAAGAC 3 cut(s) 11, 499, 858
BsuRI GGCC 4 cut(s) 10, 35, 571, 576
BtsCI GGATG 2 cut(s) 145, 679
BtsI GCAGTG 1 cut(s) 198
BtsIMutI CAGTG 4 cut(s) 198, 211, 586, 790
CfoI GCGC 2 cut(s) 481, 731
Cfr13I GGNCC 1 cut(s) 34
Csp6I GTAC 2 cut(s) 259, 516
CviAII CATG 2 cut(s) 527, 834
CviQI GTAC 2 cut(s) 259, 516
DdeI CTNAG 4 cut(s) 245, 342, 578, 847
DpnI GATC 2 cut(s) 789, 802
DpnII GATC 2 cut(s) 787, 800
DraIII CACNNNGTG 2 cut(s) 43, 726
Eam1104I CTCTTC 1 cut(s) 206
EarI CTCTTC 1 cut(s) 206
Eco130I CCWWGG 1 cut(s) 228
Eco47III AGCGCT 1 cut(s) 480
Eco91I GGTNACC 1 cut(s) 305
EcoO65I GGTNACC 1 cut(s) 305
EcoRII CCWGG 4 cut(s) 115, 261, 571, 940
EcoT14I CCWWGG 1 cut(s) 228
EcoT22I ATGCAT 2 cut(s) 375, 567
ErhI CCWWGG 1 cut(s) 228
FaeI CATG 2 cut(s) 530, 837
FalI AAGNNNNNCTT 2 cut(s) 203, 235
FatI CATG 2 cut(s) 526, 833
FauNDI CATATG 1 cut(s) 369
Fnu4HI GCNGC 3 cut(s) 25, 33, 267
FokI GGATG 2 cut(s) 152, 666
Fsp4HI GCNGC 3 cut(s) 25, 33, 267
FspBI CTAG 1 cut(s) 482
GlaI GCGC 2 cut(s) 480, 730
GluI GCNGC 3 cut(s) 25, 33, 267
GsaI CCCAGC 1 cut(s) 479
GsuI CTGGAG 2 cut(s) 138, 372
HaeII RGCGCY 1 cut(s) 482
HaeIII GGCC 4 cut(s) 10, 35, 571, 576
HhaI GCGC 2 cut(s) 481, 731
Hin1II CATG 2 cut(s) 530, 837
Hin6I GCGC 2 cut(s) 479, 729
HinP1I GCGC 2 cut(s) 479, 729
HindIII AAGCTT 1 cut(s) 217
HinfI GANTC 5 cut(s) 16, 185, 289, 338, 829
HphI GGTGA 1 cut(s) 335
Hpy166II GTNNAC 4 cut(s) 348, 470, 518, 770
Hpy188I TCNGA 9 cut(s) 82, 94, 139, 184, 288, 343, 421, 817, 850
Hpy188III TCNNGA 1 cut(s) 293
Hpy8I GTNNAC 4 cut(s) 348, 470, 518, 770
HpyAV CCTTC 4 cut(s) 108, 114, 295, 435
HpyCH4III ACNGT 3 cut(s) 206, 467, 785
HpyCH4V TGCA 7 cut(s) 191, 269, 373, 565, 584, 770, 842
HpyF10VI GCNNNNNNNGC 1 cut(s) 197
HpyF3I CTNAG 4 cut(s) 245, 342, 578, 847
Hsp92II CATG 2 cut(s) 530, 837
HspAI GCGC 2 cut(s) 479, 729
Kzo9I GATC 2 cut(s) 787, 800
Lsp1109I GCAGC 2 cut(s) 36, 253
MaeI CTAG 1 cut(s) 482
MaeIII GTNAC 2 cut(s) 305, 504
MalI GATC 2 cut(s) 789, 802
MbiI CCGCTC 1 cut(s) 298
MboI GATC 2 cut(s) 787, 800
MboII GAAGA 5 cut(s) 11, 223, 504, 567, 863
MhlI GDGCHC 1 cut(s) 772
MluCI AATT 1 cut(s) 453
MlyI GAGTC 3 cut(s) 25, 298, 332
MnlI CCTC 9 cut(s) 100, 120, 123, 357, 516, 587, 598, 621, 928
Mph1103I ATGCAT 2 cut(s) 375, 567
MspR9I CCNGG 4 cut(s) 117, 263, 573, 942
MvaI CCWGG 4 cut(s) 117, 263, 573, 942
MwoI GCNNNNNNNGC 1 cut(s) 197
NdeI CATATG 1 cut(s) 369
NdeII GATC 2 cut(s) 787, 800
NlaIII CATG 2 cut(s) 530, 837
NlaIV GGNNCC 3 cut(s) 609, 706, 939
NsiI ATGCAT 2 cut(s) 375, 567
PfeI GAWTC 2 cut(s) 185, 829
PfoI TCCNGGA 1 cut(s) 115
PkrI GCNGC 3 cut(s) 26, 34, 268
PleI GAGTC 3 cut(s) 24, 297, 332
PpsI GAGTC 3 cut(s) 24, 297, 332
Psp6I CCWGG 4 cut(s) 115, 261, 571, 940
PspEI GGTNACC 1 cut(s) 305
PspFI CCCAGC 1 cut(s) 475
PspGI CCWGG 4 cut(s) 115, 261, 571, 940
PspN4I GGNNCC 3 cut(s) 609, 706, 939
PspPI GGNCC 1 cut(s) 34
PsrI GAACNNNNNNTAC 4 cut(s) 414, 446, 634, 666
PstI CTGCAG 1 cut(s) 193
RsaI GTAC 2 cut(s) 260, 517
RsaNI GTAC 2 cut(s) 259, 516
SatI GCNGC 3 cut(s) 25, 33, 267
Sau3AI GATC 2 cut(s) 787, 800
Sau96I GGNCC 1 cut(s) 34
SchI GAGTC 3 cut(s) 25, 298, 332
ScrFI CCNGG 4 cut(s) 117, 263, 573, 942
SduI GDGCHC 1 cut(s) 772
SfcI CTRYAG 2 cut(s) 189, 699
Sse9I AATT 1 cut(s) 453
SsiI CCGC 3 cut(s) 32, 298, 712
SspMI CTAG 1 cut(s) 482
StyD4I CCNGG 4 cut(s) 115, 261, 571, 940
StyI CCWWGG 1 cut(s) 228
TaaI ACNGT 3 cut(s) 206, 467, 785
TaqI TCGA 1 cut(s) 952
TasI AATT 1 cut(s) 453
TatI WGTACW 1 cut(s) 515
TauI GCSGC 1 cut(s) 35
TfiI GAWTC 2 cut(s) 185, 829
TscAI CASTG 4 cut(s) 198, 211, 586, 790
TseI GCWGC 2 cut(s) 24, 266
TspDTI ATGAA 2 cut(s) 156, 392
TspRI CASTG 4 cut(s) 198, 211, 586, 790
VneI GTGCAC 1 cut(s) 768
XspI CTAG 1 cut(s) 482
Zsp2I ATGCAT 2 cut(s) 375, 567
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.