RLG00000018090

Oxidation resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0001099
Physical Location & Seq
Reverse (-)
25231156 .. 25232752
1597 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000018090

Sequence Viewer

Length: 678 bp
ATGAGTGAAGAGAGTCCAGCTAATCCAGTTGATGGGCCTGACACTTCTTCATTTACTGCATTTTTCTACTCACTGTTATCGTCATCAGAGTCGGGAGATAAGAGCAAAAGTTCGGATGAACAAGTTGATGACCAAATGGATAAGACCTACTCATTGTCTGATTTTGCAGTGAAAGCAAACAGTGGGAAGAGAAGCTTGTTTTCCAAGGGGAAACACACGCTTAGTAAAGCTATGCACCAGGCTGCAAGATTTGGTGGGTATCGAAGTCAAGAGCGGAAGGGTAGCCTTGATGTAAAAGGTGATGATGGGAATGACTCTGAGTTTACTGGAGTTGAGATGAGGCATATACAGAAACCACAAAAGCCTCTGGCGTTGGTTCATTTGCCAGACATCTCTGAACCATCTTTACTTCTTACTGAGAAAACTAGAATTGCTCTTTACAGTTCACTCCCGCCGCTAGTTCAGGGAAGACAATGGTTGTTACTATATAGTACATGGAGGCATGGCATATCACTTTCAACTCTATACAGAAGAAGTATACTTTGGCCTGGCCTCAGTTTGCTGGTTGTTGGAGACCGTAAAGGTGCACTTTTTGGTGGCTTGGTGGAGCCTCTAAGACCAACCAACAAGAAGTATCAGGTCCTGCTGAATCAAATACATCCTTATGAATCCATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TLD

Protein Analysis

226

Amino Acids

25.03

Weight (kDa)

8.96

Isoelectric Point (pI)

47.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TLD PF07534 132 - 212 1.3e-11 TLDc domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 32
AccBSI CCGCTC 1 cut(s) 274
AccI GTMKAC 1 cut(s) 538
AciI CCGC 3 cut(s) 274, 452, 455
AfaI GTAC 1 cut(s) 493
AfiI CCNNNNNNNGG 1 cut(s) 32
AgsI TTSAA 1 cut(s) 519
AjnI CCWGG 2 cut(s) 237, 547
AjuI GAANNNNNNNTTGG 2 cut(s) 526, 558
AluBI AGCT 3 cut(s) 20, 195, 230
AluI AGCT 3 cut(s) 20, 195, 230
Alw21I GWGCWC 1 cut(s) 589
Alw26I GTCTC 1 cut(s) 567
Alw44I GTGCAC 1 cut(s) 585
AlwNI CAGNNNCTG 1 cut(s) 643
AoxI GGCC 3 cut(s) 35, 545, 550
ApaLI GTGCAC 1 cut(s) 585
ApeKI GCWGC 1 cut(s) 242
AspS9I GGNCC 2 cut(s) 35, 640
AsuHPI GGTGA 1 cut(s) 311
AvaII GGWCC 1 cut(s) 640
BaeGI GKGCMC 1 cut(s) 589
BbsI GAAGAC 1 cut(s) 475
Bbv12I GWGCWC 1 cut(s) 589
BbvI GCAGC 1 cut(s) 229
BccI CCATC 3 cut(s) 26, 299, 409
BciT130I CCWGG 2 cut(s) 239, 549
BcoDI GTCTC 1 cut(s) 567
BfaI CTAG 3 cut(s) 426, 458, 676
BisI GCNGC 2 cut(s) 243, 455
BlsI GCNGC 2 cut(s) 244, 456
Bme1390I CCNGG 2 cut(s) 239, 549
Bme18I GGWCC 1 cut(s) 640
BmgT120I GGNCC 2 cut(s) 35, 640
BmiI GGNNCC 1 cut(s) 609
BmrFI CCNGG 2 cut(s) 239, 549
BpiI GAAGAC 1 cut(s) 475
BpmI CTGGAG 1 cut(s) 348
BsaI GGTCTC 1 cut(s) 567
BsaJI CCNNGG 1 cut(s) 204
Bsc4I CCNNNNNNNGG 1 cut(s) 32
Bse1I ACTGG 2 cut(s) 26, 331
BseBI CCWGG 2 cut(s) 239, 549
BseDI CCNNGG 1 cut(s) 204
BseGI GGATG 2 cut(s) 121, 658
BseLI CCNNNNNNNGG 1 cut(s) 32
BseMII CTCAG 3 cut(s) 309, 408, 568
BseNI ACTGG 2 cut(s) 26, 331
BseSI GKGCMC 1 cut(s) 589
BseXI GCAGC 1 cut(s) 229
BshFI GGCC 3 cut(s) 37, 547, 552
BsiHKAI GWGCWC 1 cut(s) 589
BslI CCNNNNNNNGG 1 cut(s) 32
BsmAI GTCTC 1 cut(s) 567
BsnI GGCC 3 cut(s) 37, 547, 552
Bso31I GGTCTC 1 cut(s) 567
Bsp1286I GDGCHC 1 cut(s) 589
BspACI CCGC 3 cut(s) 274, 452, 455
BspANI GGCC 3 cut(s) 37, 547, 552
BspCNI CTCAG 3 cut(s) 310, 409, 567
BspLI GGNNCC 1 cut(s) 609
BspTNI GGTCTC 1 cut(s) 567
BsrBI CCGCTC 1 cut(s) 274
BsrI ACTGG 2 cut(s) 26, 331
BssECI CCNNGG 1 cut(s) 204
BssNAI GTATAC 1 cut(s) 539
BssT1I CCWWGG 1 cut(s) 204
Bst1107I GTATAC 1 cut(s) 539
Bst2UI CCWGG 2 cut(s) 239, 549
Bst4CI ACNGT 4 cut(s) 75, 182, 443, 578
Bst6I CTCTTC 2 cut(s) 3, 182
BstDEI CTNAG 5 cut(s) 221, 318, 417, 554, 614
BstF5I GGATG 2 cut(s) 121, 658
BstMAI GTCTC 1 cut(s) 567
BstMWI GCNNNNNNNGC 1 cut(s) 173
BstNI CCWGG 2 cut(s) 239, 549
BstSCI CCNGG 2 cut(s) 237, 547
BstSLI GKGCMC 1 cut(s) 589
BstV1I GCAGC 1 cut(s) 229
BstV2I GAAGAC 1 cut(s) 475
BstZ17I GTATAC 1 cut(s) 539
BsuRI GGCC 3 cut(s) 37, 547, 552
BtsCI GGATG 2 cut(s) 121, 658
BtsI GCAGTG 1 cut(s) 174
BtsIMutI CAGTG 3 cut(s) 71, 174, 187
CaiI CAGNNNCTG 1 cut(s) 643
Cfr13I GGNCC 2 cut(s) 35, 640
Csp6I GTAC 1 cut(s) 492
CviAII CATG 2 cut(s) 495, 503
CviQI GTAC 1 cut(s) 492
DdeI CTNAG 5 cut(s) 221, 318, 417, 554, 614
Eam1104I CTCTTC 2 cut(s) 3, 182
EarI CTCTTC 2 cut(s) 3, 182
Eco130I CCWWGG 1 cut(s) 204
Eco31I GGTCTC 1 cut(s) 567
Eco47I GGWCC 1 cut(s) 640
EcoO109I RGGNCCY 1 cut(s) 640
EcoRII CCWGG 2 cut(s) 237, 547
EcoT14I CCWWGG 1 cut(s) 204
ErhI CCWWGG 1 cut(s) 204
FaeI CATG 2 cut(s) 498, 506
FalI AAGNNNNNCTT 4 cut(s) 179, 211, 573, 605
FatI CATG 2 cut(s) 494, 502
FauI CCCGC 1 cut(s) 459
FblI GTMKAC 1 cut(s) 538
Fnu4HI GCNGC 2 cut(s) 243, 455
FokI GGATG 2 cut(s) 128, 645
Fsp4HI GCNGC 2 cut(s) 243, 455
FspBI CTAG 3 cut(s) 426, 458, 676
GluI GCNGC 2 cut(s) 243, 455
GsuI CTGGAG 1 cut(s) 348
HaeIII GGCC 3 cut(s) 37, 547, 552
Hin1II CATG 2 cut(s) 498, 506
HindIII AAGCTT 1 cut(s) 193
HinfI GANTC 5 cut(s) 13, 89, 314, 649, 668
HphI GGTGA 1 cut(s) 311
Hpy166II GTNNAC 4 cut(s) 324, 446, 539, 587
Hpy188I TCNGA 5 cut(s) 88, 115, 160, 319, 397
Hpy188III TCNNGA 2 cut(s) 93, 269
Hpy8I GTNNAC 4 cut(s) 324, 446, 539, 587
HpyAV CCTTC 1 cut(s) 271
HpyCH4III ACNGT 4 cut(s) 75, 182, 443, 578
HpyCH4V TGCA 5 cut(s) 59, 167, 235, 245, 587
HpyF10VI GCNNNNNNNGC 1 cut(s) 173
HpyF3I CTNAG 5 cut(s) 221, 318, 417, 554, 614
Hsp92II CATG 2 cut(s) 498, 506
LmnI GCTCC 1 cut(s) 607
Lsp1109I GCAGC 1 cut(s) 229
MaeI CTAG 3 cut(s) 426, 458, 676
MaeIII GTNAC 1 cut(s) 480
MbiI CCGCTC 1 cut(s) 274
MboII GAAGA 5 cut(s) 20, 39, 199, 480, 543
MhlI GDGCHC 1 cut(s) 589
MluCI AATT 1 cut(s) 429
MlyI GAGTC 3 cut(s) 22, 98, 308
MmeI TCCRAC 1 cut(s) 550
MnlI CCTC 5 cut(s) 333, 375, 492, 563, 621
MslI CAYNNNNRTG 1 cut(s) 663
MspR9I CCNGG 2 cut(s) 239, 549
MvaI CCWGG 2 cut(s) 239, 549
MwoI GCNNNNNNNGC 1 cut(s) 173
NlaIII CATG 2 cut(s) 498, 506
NlaIV GGNNCC 1 cut(s) 609
PfeI GAWTC 2 cut(s) 649, 668
PflMI CCANNNNNTGG 1 cut(s) 32
PkrI GCNGC 2 cut(s) 244, 456
PleI GAGTC 3 cut(s) 21, 97, 308
PpsI GAGTC 3 cut(s) 21, 97, 308
PpuMI RGGWCCY 1 cut(s) 640
Psp5II RGGWCCY 1 cut(s) 640
Psp6I CCWGG 2 cut(s) 237, 547
PspGI CCWGG 2 cut(s) 237, 547
PspN4I GGNNCC 1 cut(s) 609
PspPI GGNCC 2 cut(s) 35, 640
PspPPI RGGWCCY 1 cut(s) 640
PsrI GAACNNNNNNTAC 2 cut(s) 390, 422
PstNI CAGNNNCTG 1 cut(s) 643
RsaI GTAC 1 cut(s) 493
RsaNI GTAC 1 cut(s) 492
RseI CAYNNNNRTG 1 cut(s) 663
SatI GCNGC 2 cut(s) 243, 455
Sau96I GGNCC 2 cut(s) 35, 640
SchI GAGTC 3 cut(s) 22, 98, 308
ScrFI CCNGG 2 cut(s) 239, 549
SduI GDGCHC 1 cut(s) 589
SetI ASST 7 cut(s) 22, 149, 197, 232, 301, 586, 642
SinI GGWCC 1 cut(s) 640
SmiMI CAYNNNNRTG 1 cut(s) 663
Sse9I AATT 1 cut(s) 429
SsiI CCGC 3 cut(s) 274, 452, 455
SspMI CTAG 3 cut(s) 426, 458, 676
StyD4I CCNGG 2 cut(s) 237, 547
StyI CCWWGG 1 cut(s) 204
TaaI ACNGT 4 cut(s) 75, 182, 443, 578
TaqI TCGA 1 cut(s) 262
TasI AATT 1 cut(s) 429
TatI WGTACW 1 cut(s) 491
TauI GCSGC 1 cut(s) 457
TfiI GAWTC 2 cut(s) 649, 668
TscAI CASTG 3 cut(s) 78, 174, 187
TseI GCWGC 1 cut(s) 242
TspDTI ATGAA 3 cut(s) 39, 132, 368
TspRI CASTG 3 cut(s) 78, 174, 187
Van91I CCANNNNNTGG 1 cut(s) 32
VneI GTGCAC 1 cut(s) 585
VpaK11BI GGWCC 1 cut(s) 640
XmiI GTMKAC 1 cut(s) 538
XspI CTAG 3 cut(s) 426, 458, 676
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.