RLG00000018083

Oxidation resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0001099
Physical Location & Seq
Reverse (-)
25121015 .. 25123742
2728 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000018083

Sequence Viewer

Length: 957 bp
ATGAGTGAAGAGAGTCCAGCTAATCCAGTTGATGGGCCTGACACTTCTTCATTTACTGCATTTCTCTACTCACTGTTATCGTCATCAGAGTCGGGAGATAAGAGCAAAAGTTCGGATGAACAGGTTGATGACCAAATGGATAAGAGCAACTCATTATCTGATTCTGCAGTGAAAGCAAACAGTGGGAAGAGAAGCTTGTTTTCCGAGGGGGAACACACGCTTAGTAAAGCTATGTACCAGGCTGCAAGATTTGGTTGGCATCGGAGTCAAGAGCAGAAGGGTAACCTTGACGTGAAAGGTGATGATGGGAATGACTCTGAGTTTACTGGAGTTGAGATGAGGCATATGCATAAAGCACAGAAGCCTGTGGCTTTGGTTCATCTACCAGACGTCTCCGTACCTTCTTTACTTCTTACTGAGAAAAATAGAATTGCTCTTTACAGTTCACTCCCAGCGCTAGTTCAGGGAAGTCAATGGTTGTTACTATCTAGTACATGGAGGCATGGCATATCACTTTCAACCCTATACAGAAGAAGTGTGCTTTGGCCTGGCCTCAGTTTGTTGGTTGTTGGAGACTGTAAAGGTGCAGTTTTTGGTGGCTTGGTGGAGGCACCTCTAAGACCAACCAACAAGAAGTATCGGGGAACAAATGATACATTTGTTTTCACAAATACACCTGACCATCCTGTTATATATCGCCCTACAGGTGCCAACCGCTATTTCACATTGTGTGCTACTGACTTTTTAGCTATTGGCGGGGGTGGTCATTTTGCACTCTATTTGAACAGTGATCTATTGAGTGGATCAAGTTCAGTTTCAGAAACCTATGGGAATCCATGTCTTGCAAACTCAGAAGACTTCGATGTGAAAGAAGTAGAGTTATGGGGTTTTGTTTATGCTACTAAGTATGAGGAAGTACTTGCTCAAAGCCGTATGGAGGCACCTGGGATTTGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TLD

Protein Analysis

319

Amino Acids

34.73

Weight (kDa)

5.4

Isoelectric Point (pI)

43.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TLD PF07534 133 - 297 1.1e-37 TLDc domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 393
AccB1I GGYRCC 3 cut(s) 610, 707, 940
AccB7I CCANNNNNTGG 1 cut(s) 32
AciI CCGC 2 cut(s) 715, 756
AclWI GGATC 1 cut(s) 811
AcyI GRCGYC 1 cut(s) 390
AdeI CACNNNGTG 1 cut(s) 729
AfaI GTAC 4 cut(s) 236, 399, 493, 918
AfeI AGCGCT 1 cut(s) 456
AfiI CCNNNNNNNGG 2 cut(s) 32, 937
AgsI TTSAA 2 cut(s) 519, 784
AjiI CACGTC 1 cut(s) 292
AjnI CCWGG 3 cut(s) 237, 547, 943
AjuI GAANNNNNNNTTGG 4 cut(s) 526, 558, 704, 736
AluBI AGCT 4 cut(s) 20, 195, 230, 749
AluI AGCT 4 cut(s) 20, 195, 230, 749
Alw26I GTCTC 2 cut(s) 397, 567
AlwI GGATC 1 cut(s) 811
Aor51HI AGCGCT 1 cut(s) 456
AoxI GGCC 3 cut(s) 35, 545, 550
ApeKI GCWGC 1 cut(s) 242
AspLEI GCGC 1 cut(s) 457
AspS9I GGNCC 1 cut(s) 35
AsuHPI GGTGA 1 cut(s) 311
BaeI ACNNNNGTAYC 2 cut(s) 645, 678
BanI GGYRCC 3 cut(s) 610, 707, 940
BbsI GAAGAC 1 cut(s) 861
BbvI GCAGC 1 cut(s) 229
BccI CCATC 3 cut(s) 26, 299, 690
BceAI ACGGC 1 cut(s) 915
BciT130I CCWGG 3 cut(s) 239, 549, 945
BcoDI GTCTC 2 cut(s) 397, 567
BfaI CTAG 2 cut(s) 458, 489
BfmI CTRYAG 2 cut(s) 165, 702
BfoI RGCGCY 1 cut(s) 458
BisI GCNGC 1 cut(s) 243
BlsI GCNGC 1 cut(s) 244
BmcAI AGTACT 1 cut(s) 918
Bme1390I CCNGG 3 cut(s) 239, 549, 945
BmgBI CACGTC 1 cut(s) 292
BmgT120I GGNCC 1 cut(s) 35
BmiI GGNNCC 3 cut(s) 612, 709, 942
BmrFI CCNGG 3 cut(s) 239, 549, 945
BmsI GCATC 1 cut(s) 268
BpiI GAAGAC 1 cut(s) 861
BpmI CTGGAG 1 cut(s) 348
BsaHI GRCGYC 1 cut(s) 390
BsaJI CCNNGG 2 cut(s) 204, 944
Bsc4I CCNNNNNNNGG 2 cut(s) 32, 937
Bse1I ACTGG 2 cut(s) 26, 331
BseBI CCWGG 3 cut(s) 239, 549, 945
BseDI CCNNGG 2 cut(s) 204, 944
BseGI GGATG 2 cut(s) 121, 682
BseLI CCNNNNNNNGG 2 cut(s) 32, 937
BseMII CTCAG 4 cut(s) 309, 408, 568, 864
BseNI ACTGG 2 cut(s) 26, 331
BseXI GCAGC 1 cut(s) 229
BseYI CCCAGC 1 cut(s) 451
BsgI GTGCAG 1 cut(s) 606
BshFI GGCC 3 cut(s) 37, 547, 552
BshNI GGYRCC 3 cut(s) 610, 707, 940
BslI CCNNNNNNNGG 2 cut(s) 32, 937
BsmAI GTCTC 2 cut(s) 397, 567
BsmBI CGTCTC 1 cut(s) 397
BsnI GGCC 3 cut(s) 37, 547, 552
Bsp143I GATC 2 cut(s) 790, 803
BspACI CCGC 2 cut(s) 715, 756
BspANI GGCC 3 cut(s) 37, 547, 552
BspCNI CTCAG 4 cut(s) 310, 409, 567, 863
BspLI GGNNCC 3 cut(s) 612, 709, 942
BspMAI CTGCAG 1 cut(s) 169
BspPI GGATC 1 cut(s) 811
BspT107I GGYRCC 3 cut(s) 610, 707, 940
BsrI ACTGG 2 cut(s) 26, 331
BssECI CCNNGG 2 cut(s) 204, 944
BssMI GATC 2 cut(s) 790, 803
BssNI GRCGYC 1 cut(s) 390
Bst2UI CCWGG 3 cut(s) 239, 549, 945
Bst4CI ACNGT 5 cut(s) 75, 182, 443, 578, 788
Bst6I CTCTTC 2 cut(s) 3, 182
BstACI GRCGYC 1 cut(s) 390
BstDEI CTNAG 7 cut(s) 221, 318, 417, 554, 617, 850, 903
BstEII GGTNACC 1 cut(s) 281
BstF5I GGATG 2 cut(s) 121, 682
BstH2I RGCGCY 1 cut(s) 458
BstHHI GCGC 1 cut(s) 457
BstKTI GATC 2 cut(s) 793, 806
BstMAI GTCTC 2 cut(s) 397, 567
BstMBI GATC 2 cut(s) 790, 803
BstMWI GCNNNNNNNGC 1 cut(s) 173
BstNI CCWGG 3 cut(s) 239, 549, 945
BstPI GGTNACC 1 cut(s) 281
BstSCI CCNGG 3 cut(s) 237, 547, 943
BstSFI CTRYAG 2 cut(s) 165, 702
BstV1I GCAGC 1 cut(s) 229
BstV2I GAAGAC 1 cut(s) 861
BsuRI GGCC 3 cut(s) 37, 547, 552
BtrI CACGTC 1 cut(s) 292
BtsCI GGATG 2 cut(s) 121, 682
BtsI GCAGTG 1 cut(s) 174
BtsIMutI CAGTG 4 cut(s) 71, 174, 187, 793
CfoI GCGC 1 cut(s) 457
Cfr13I GGNCC 1 cut(s) 35
Csp6I GTAC 4 cut(s) 235, 398, 492, 917
CviAII CATG 3 cut(s) 495, 503, 837
CviQI GTAC 4 cut(s) 235, 398, 492, 917
DdeI CTNAG 7 cut(s) 221, 318, 417, 554, 617, 850, 903
DpnI GATC 2 cut(s) 792, 805
DpnII GATC 2 cut(s) 790, 803
DraIII CACNNNGTG 1 cut(s) 729
Eam1104I CTCTTC 2 cut(s) 3, 182
EarI CTCTTC 2 cut(s) 3, 182
Eco47III AGCGCT 1 cut(s) 456
Eco91I GGTNACC 1 cut(s) 281
EcoO65I GGTNACC 1 cut(s) 281
EcoRII CCWGG 3 cut(s) 237, 547, 943
EcoT22I ATGCAT 1 cut(s) 351
Esp3I CGTCTC 1 cut(s) 397
FaeI CATG 3 cut(s) 498, 506, 840
FalI AAGNNNNNCTT 2 cut(s) 179, 211
FatI CATG 3 cut(s) 494, 502, 836
FauI CCCGC 1 cut(s) 749
FauNDI CATATG 1 cut(s) 345
Fnu4HI GCNGC 1 cut(s) 243
FokI GGATG 2 cut(s) 128, 669
Fsp4HI GCNGC 1 cut(s) 243
FspBI CTAG 2 cut(s) 458, 489
GlaI GCGC 1 cut(s) 456
GluI GCNGC 1 cut(s) 243
GsaI CCCAGC 1 cut(s) 455
GsuI CTGGAG 1 cut(s) 348
HaeII RGCGCY 1 cut(s) 458
HaeIII GGCC 3 cut(s) 37, 547, 552
HhaI GCGC 1 cut(s) 457
Hin1I GRCGYC 1 cut(s) 390
Hin1II CATG 3 cut(s) 498, 506, 840
Hin6I GCGC 1 cut(s) 455
HinP1I GCGC 1 cut(s) 455
HindIII AAGCTT 1 cut(s) 193
HinfI GANTC 6 cut(s) 13, 89, 161, 265, 314, 832
HphI GGTGA 1 cut(s) 311
Hpy166II GTNNAC 2 cut(s) 324, 446
Hpy188I TCNGA 8 cut(s) 88, 115, 160, 205, 264, 319, 820, 853
Hpy188III TCNNGA 2 cut(s) 93, 269
Hpy8I GTNNAC 2 cut(s) 324, 446
HpyAV CCTTC 2 cut(s) 271, 411
HpyCH4III ACNGT 5 cut(s) 75, 182, 443, 578, 788
HpyCH4IV ACGT 2 cut(s) 291, 390
HpyCH4V TGCA 7 cut(s) 59, 167, 245, 349, 587, 773, 845
HpyF10VI GCNNNNNNNGC 1 cut(s) 173
HpyF3I CTNAG 7 cut(s) 221, 318, 417, 554, 617, 850, 903
HpySE526I ACGT 2 cut(s) 291, 390
Hsp92I GRCGYC 1 cut(s) 390
Hsp92II CATG 3 cut(s) 498, 506, 840
HspAI GCGC 1 cut(s) 455
Kzo9I GATC 2 cut(s) 790, 803
Lsp1109I GCAGC 1 cut(s) 229
LweI GCATC 1 cut(s) 268
MaeI CTAG 2 cut(s) 458, 489
MaeII ACGT 2 cut(s) 291, 390
MaeIII GTNAC 2 cut(s) 281, 480
MalI GATC 2 cut(s) 792, 805
MboI GATC 2 cut(s) 790, 803
MboII GAAGA 5 cut(s) 20, 39, 199, 543, 866
MluCI AATT 1 cut(s) 429
MlyI GAGTC 4 cut(s) 22, 98, 274, 308
MmeI TCCRAC 1 cut(s) 550
MnlI CCTC 8 cut(s) 199, 333, 492, 563, 601, 624, 904, 931
Mph1103I ATGCAT 1 cut(s) 351
MspR9I CCNGG 3 cut(s) 239, 549, 945
MvaI CCWGG 3 cut(s) 239, 549, 945
MwoI GCNNNNNNNGC 1 cut(s) 173
NdeI CATATG 1 cut(s) 345
NdeII GATC 2 cut(s) 790, 803
NlaIII CATG 3 cut(s) 498, 506, 840
NlaIV GGNNCC 3 cut(s) 612, 709, 942
NsiI ATGCAT 1 cut(s) 351
PfeI GAWTC 2 cut(s) 161, 832
PflMI CCANNNNNTGG 1 cut(s) 32
PkrI GCNGC 1 cut(s) 244
PleI GAGTC 4 cut(s) 21, 97, 273, 308
PpsI GAGTC 4 cut(s) 21, 97, 273, 308
Psp6I CCWGG 3 cut(s) 237, 547, 943
PspEI GGTNACC 1 cut(s) 281
PspFI CCCAGC 1 cut(s) 451
PspGI CCWGG 3 cut(s) 237, 547, 943
PspN4I GGNNCC 3 cut(s) 612, 709, 942
PspPI GGNCC 1 cut(s) 35
PsrI GAACNNNNNNTAC 2 cut(s) 637, 669
PstI CTGCAG 1 cut(s) 169
RsaI GTAC 4 cut(s) 236, 399, 493, 918
RsaNI GTAC 4 cut(s) 235, 398, 492, 917
SatI GCNGC 1 cut(s) 243
Sau3AI GATC 2 cut(s) 790, 803
Sau96I GGNCC 1 cut(s) 35
ScaI AGTACT 1 cut(s) 918
SchI GAGTC 4 cut(s) 22, 98, 274, 308
ScrFI CCNGG 3 cut(s) 239, 549, 945
SfaNI GCATC 1 cut(s) 268
SfcI CTRYAG 2 cut(s) 165, 702
Sse9I AATT 1 cut(s) 429
SsiI CCGC 2 cut(s) 715, 756
SspMI CTAG 2 cut(s) 458, 489
StyD4I CCNGG 3 cut(s) 237, 547, 943
TaaI ACNGT 5 cut(s) 75, 182, 443, 578, 788
TaiI ACGT 2 cut(s) 294, 393
TaqI TCGA 1 cut(s) 861
TasI AATT 1 cut(s) 429
TatI WGTACW 2 cut(s) 491, 916
TfiI GAWTC 2 cut(s) 161, 832
TscAI CASTG 4 cut(s) 78, 174, 187, 793
TseI GCWGC 1 cut(s) 242
TspDTI ATGAA 3 cut(s) 39, 132, 368
TspGWI ACGGA 1 cut(s) 385
TspRI CASTG 4 cut(s) 78, 174, 187, 793
Van91I CCANNNNNTGG 1 cut(s) 32
XspI CTAG 2 cut(s) 458, 489
ZraI GACGTC 1 cut(s) 391
ZrmI AGTACT 1 cut(s) 918
Zsp2I ATGCAT 1 cut(s) 351
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.