Rh2DG254500

Oxidation resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0001099
Physical Location & Seq
Reverse (-)
26939340 .. 26943543
4204 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG254500.1

Sequence Viewer

Length: 303 bp
ATGGGTCTGACACTTTTTCATTTACTGTGTTCCTCTGCTCACTGTTATGGTCATCAGAGTCGGGAGATGAGGCATATGTGGACAGCACAGAAGCCTGTGGCTTTGGTTCATCTACCAGACATCTCCCAACCTTCTTTACTTCTTACTGAGAAACCTAGAATTGCTCTTTACAGTTCACTCCTGGCGCCACACATTCCTGATCCTGTTTTGCAGTACATAGAGGCATGGCATATCACTTGCAACCTTATACAGAAGAAGTATGGTTTGGCCTGGCCTCAGTTTGCTGGTTGTTGGAGACCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TLD

Protein Analysis

100

Amino Acids

11.47

Weight (kDa)

8.8

Isoelectric Point (pI)

52.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 184
AclWI GGATC 1 cut(s) 194
AcyI GRCGYC 1 cut(s) 185
AfaI GTAC 1 cut(s) 215
AjnI CCWGG 2 cut(s) 180, 269
AjuI GAANNNNNNNTTGG 2 cut(s) 248, 280
Alw26I GTCTC 1 cut(s) 289
AlwI GGATC 1 cut(s) 194
AoxI GGCC 2 cut(s) 267, 272
AspLEI GCGC 1 cut(s) 187
BanI GGYRCC 1 cut(s) 184
BciT130I CCWGG 2 cut(s) 182, 271
BcoDI GTCTC 1 cut(s) 289
BfaI CTAG 1 cut(s) 156
BfoI RGCGCY 1 cut(s) 188
Bme1390I CCNGG 2 cut(s) 182, 271
BmiI GGNNCC 1 cut(s) 186
BmrFI CCNGG 2 cut(s) 182, 271
BsaHI GRCGYC 1 cut(s) 185
BsaI GGTCTC 1 cut(s) 289
BseBI CCWGG 2 cut(s) 182, 271
BseMII CTCAG 2 cut(s) 138, 290
BshFI GGCC 2 cut(s) 269, 274
BshNI GGYRCC 1 cut(s) 184
BsmAI GTCTC 1 cut(s) 289
BsnI GGCC 2 cut(s) 269, 274
Bso31I GGTCTC 1 cut(s) 289
Bsp143I GATC 1 cut(s) 199
BspANI GGCC 2 cut(s) 269, 274
BspCNI CTCAG 2 cut(s) 139, 289
BspLI GGNNCC 1 cut(s) 186
BspPI GGATC 1 cut(s) 194
BspT107I GGYRCC 1 cut(s) 184
BspTNI GGTCTC 1 cut(s) 289
BssMI GATC 1 cut(s) 199
BssNI GRCGYC 1 cut(s) 185
Bst2UI CCWGG 2 cut(s) 182, 271
Bst4CI ACNGT 3 cut(s) 27, 44, 173
BstACI GRCGYC 1 cut(s) 185
BstDEI CTNAG 2 cut(s) 147, 276
BstH2I RGCGCY 1 cut(s) 188
BstHHI GCGC 1 cut(s) 187
BstKTI GATC 1 cut(s) 202
BstMAI GTCTC 1 cut(s) 289
BstMBI GATC 1 cut(s) 199
BstNI CCWGG 2 cut(s) 182, 271
BstSCI CCNGG 2 cut(s) 180, 269
BsuRI GGCC 2 cut(s) 269, 274
BtsIMutI CAGTG 1 cut(s) 40
CfoI GCGC 1 cut(s) 187
Csp6I GTAC 1 cut(s) 214
CviAII CATG 1 cut(s) 225
CviJI RGCY 4 cut(s) 94, 101, 269, 274
CviKI_1 RGCY 4 cut(s) 94, 101, 269, 274
CviQI GTAC 1 cut(s) 214
DdeI CTNAG 2 cut(s) 147, 276
DinI GGCGCC 1 cut(s) 186
DpnI GATC 1 cut(s) 201
DpnII GATC 1 cut(s) 199
Eco31I GGTCTC 1 cut(s) 289
EcoRII CCWGG 2 cut(s) 180, 269
EgeI GGCGCC 1 cut(s) 186
EheI GGCGCC 1 cut(s) 186
FaeI CATG 1 cut(s) 228
FaiI YATR 9 cut(s) 48, 75, 77, 218, 226, 231, 248, 261, 301
FatI CATG 1 cut(s) 224
FauNDI CATATG 1 cut(s) 75
FspBI CTAG 1 cut(s) 156
GlaI GCGC 1 cut(s) 186
HaeII RGCGCY 1 cut(s) 188
HaeIII GGCC 2 cut(s) 269, 274
HhaI GCGC 1 cut(s) 187
Hin1I GRCGYC 1 cut(s) 185
Hin1II CATG 1 cut(s) 228
Hin6I GCGC 1 cut(s) 185
HinP1I GCGC 1 cut(s) 185
HinfI GANTC 1 cut(s) 58
Hpy166II GTNNAC 2 cut(s) 81, 176
Hpy188I TCNGA 2 cut(s) 9, 57
Hpy188III TCNNGA 2 cut(s) 62, 197
Hpy8I GTNNAC 2 cut(s) 81, 176
HpyAV CCTTC 1 cut(s) 141
HpyCH4III ACNGT 3 cut(s) 27, 44, 173
HpyCH4V TGCA 2 cut(s) 211, 240
HpyF3I CTNAG 2 cut(s) 147, 276
Hsp92I GRCGYC 1 cut(s) 185
Hsp92II CATG 1 cut(s) 228
HspAI GCGC 1 cut(s) 185
KasI GGCGCC 1 cut(s) 184
Kzo9I GATC 1 cut(s) 199
LpnPI CCDG 9 cut(s) 108, 129, 167, 194, 210, 216, 256, 270, 283
MaeI CTAG 1 cut(s) 156
MalI GATC 1 cut(s) 201
MboI GATC 1 cut(s) 199
MboII GAAGA 1 cut(s) 265
MluCI AATT 1 cut(s) 159
Mly113I GGCGCC 1 cut(s) 185
MlyI GAGTC 1 cut(s) 67
MmeI TCCRAC 1 cut(s) 272
MnlI CCTC 4 cut(s) 43, 63, 214, 285
MslI CAYNNNNRTG 1 cut(s) 45
MspR9I CCNGG 2 cut(s) 182, 271
MvaI CCWGG 2 cut(s) 182, 271
NarI GGCGCC 1 cut(s) 185
NdeI CATATG 1 cut(s) 75
NdeII GATC 1 cut(s) 199
NlaIII CATG 1 cut(s) 228
NlaIV GGNNCC 1 cut(s) 186
PleI GAGTC 1 cut(s) 66
PluTI GGCGCC 1 cut(s) 188
PpsI GAGTC 1 cut(s) 66
Psp6I CCWGG 2 cut(s) 180, 269
PspGI CCWGG 2 cut(s) 180, 269
PspN4I GGNNCC 1 cut(s) 186
RsaI GTAC 1 cut(s) 215
RsaNI GTAC 1 cut(s) 214
RseI CAYNNNNRTG 1 cut(s) 45
Sau3AI GATC 1 cut(s) 199
SchI GAGTC 1 cut(s) 67
ScrFI CCNGG 2 cut(s) 182, 271
SetI ASST 3 cut(s) 133, 157, 246
SfoI GGCGCC 1 cut(s) 186
SmiMI CAYNNNNRTG 1 cut(s) 45
Sse9I AATT 1 cut(s) 159
SspDI GGCGCC 1 cut(s) 184
SspMI CTAG 1 cut(s) 156
StyD4I CCNGG 2 cut(s) 180, 269
TaaI ACNGT 3 cut(s) 27, 44, 173
TasI AATT 1 cut(s) 159
TatI WGTACW 1 cut(s) 213
TscAI CASTG 1 cut(s) 47
TspDTI ATGAA 2 cut(s) 8, 98
TspRI CASTG 1 cut(s) 47
XspI CTAG 1 cut(s) 156
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.