Rh2CG250800

Oxidation resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0001099
Physical Location & Seq
Reverse (-)
26616022 .. 26619766
3745 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG250800.1

Sequence Viewer

Length: 906 bp
ATGGGTAGGCCAAGGAGTCTTCGCAGCAAAGCGGCCCACTTTGTGACTGATATCACTACTGGATTGCTCAACCCCATTTCTGACAAACCCTCCAAACCCTCTCCTTCTCCTCCTCCTGAAGATGTGGATGGGTCCAGAGGAAGTCAAAATGGAACAATGAGTGAAGAGAGTCCAGCTAATCCAGTTGACGGGCCTGACACTTCTTCATTTACTGCATTTCTCTACTCACTGTTATCGTCATCAGAGTCGGGAGATAAGAGCAAAAGTTCGGATGAACAGGTTGATGACCAAATAGATAAGAGCAACTCATTGTCTGATTCTGCAGTGAAAGCAAACAGTGGGAAGAGAAGTTTGTTTTCTAAGGGGAAACACACGCTTAGTAAAGCGTTGTACCAGGCTGCAAGATTTGGTGGGTATCGGAGTCAAGAGCGGAAGGGTAACCTTGATGTAAAAGGTGATGATGGGAATGACTCTGAGTTCGCTGGAGTTGAGATGAGGCATATGCAGAAACCACAAAAGCCTGTGGCCTTGGTTCATTTGACAGACATCTCTGAACCGTCTTTACTTCTTACTGAGAAAACTAGAATTGCTCTTTACAGTTCACTCCCGGCGCTAGTACAGGGAAGACGATGGTTGCTACTATATAGTACATGGAGGCATGGCATATCACTTTCAACCCTATACAGAAGAAGTATGCTTTGGCCTGGCCTCAGTTTGCTGGTTGTTGGAGACCGTAAAGGTGCAGTTTTTGGTGGCTTGGTGGAGGTACCTCTAAGACCAACCAACAAGAAGTATCAGGGAACAAATGATACATTTGTTTTCACAAATACACCTGGCCATCCTGTTATATATCGCCCTACAGGTACAAATTTATCCTTCTTGCTTCCTAGGCAACTCAGTTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TLD

Protein Analysis

301

Amino Acids

32.9

Weight (kDa)

9.54

Isoelectric Point (pI)

44.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TLD PF07534 184 - 293 2.6e-20 TLDc domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 766
AccB1I GGYRCC 1 cut(s) 766
AccBSI CCGCTC 1 cut(s) 430
AciI CCGC 2 cut(s) 32, 430
AcoI YGGCCR 1 cut(s) 835
AcsI RAATTY 1 cut(s) 868
AcuI CTGAAG 1 cut(s) 138
AdeI CACNNNGTG 1 cut(s) 43
AfaI GTAC 5 cut(s) 392, 618, 649, 768, 865
AfiI CCNNNNNNNGG 1 cut(s) 188
AgsI TTSAA 1 cut(s) 675
AjnI CCWGG 3 cut(s) 393, 703, 832
AjuI GAANNNNNNNTTGG 2 cut(s) 682, 714
AluBI AGCT 1 cut(s) 176
AluI AGCT 1 cut(s) 176
Alw26I GTCTC 1 cut(s) 723
AlwNI CAGNNNCTG 1 cut(s) 903
AoxI GGCC 7 cut(s) 8, 33, 191, 525, 701, 706, 835
ApeKI GCWGC 2 cut(s) 24, 398
ApoI RAATTY 1 cut(s) 868
ArsI GACNNNNNNTTYG 2 cut(s) 461, 493
Asp718I GGTACC 1 cut(s) 766
AspA2I CCTAGG 1 cut(s) 887
AspLEI GCGC 1 cut(s) 613
AspS9I GGNCC 3 cut(s) 34, 132, 191
AsuC2I CCSGG 1 cut(s) 608
AsuHPI GGTGA 1 cut(s) 467
AvaII GGWCC 1 cut(s) 132
AvrII CCTAGG 1 cut(s) 887
BaeI ACNNNNGTAYC 2 cut(s) 801, 834
BalI TGGCCA 1 cut(s) 837
BanI GGYRCC 1 cut(s) 766
BbsI GAAGAC 2 cut(s) 11, 631
BbvI GCAGC 2 cut(s) 36, 385
BccI CCATC 4 cut(s) 122, 455, 624, 846
BciT130I CCWGG 3 cut(s) 395, 705, 834
BcnI CCSGG 1 cut(s) 608
BcoDI GTCTC 1 cut(s) 723
BfaI CTAG 3 cut(s) 582, 614, 888
BfmI CTRYAG 2 cut(s) 321, 858
BfoI RGCGCY 1 cut(s) 614
BisI GCNGC 3 cut(s) 25, 33, 399
BlnI CCTAGG 1 cut(s) 887
BlsI GCNGC 3 cut(s) 26, 34, 400
Bme1390I CCNGG 4 cut(s) 395, 608, 705, 834
Bme18I GGWCC 1 cut(s) 132
BmgT120I GGNCC 3 cut(s) 34, 132, 191
BmiI GGNNCC 2 cut(s) 133, 768
BmrFI CCNGG 4 cut(s) 395, 608, 705, 834
BpiI GAAGAC 2 cut(s) 11, 631
BpmI CTGGAG 1 cut(s) 504
BpuMI CCSGG 1 cut(s) 608
BsaI GGTCTC 1 cut(s) 723
BsaJI CCNNGG 3 cut(s) 11, 528, 887
BsaXI ACNNNNNCTCC 2 cut(s) 74, 104
Bsc4I CCNNNNNNNGG 1 cut(s) 188
Bse1I ACTGG 2 cut(s) 64, 182
BseBI CCWGG 3 cut(s) 395, 705, 834
BseDI CCNNGG 3 cut(s) 11, 528, 887
BseGI GGATG 3 cut(s) 133, 277, 838
BseLI CCNNNNNNNGG 1 cut(s) 188
BseMII CTCAG 3 cut(s) 465, 564, 724
BseNI ACTGG 2 cut(s) 64, 182
BseRI GAGGAG 2 cut(s) 99, 102
BseXI GCAGC 2 cut(s) 36, 385
BsgI GTGCAG 1 cut(s) 762
BshFI GGCC 7 cut(s) 10, 35, 193, 527, 703, 708, 837
BshNI GGYRCC 1 cut(s) 766
BsiSI CCGG 1 cut(s) 608
BslI CCNNNNNNNGG 1 cut(s) 188
BsmAI GTCTC 1 cut(s) 723
BsnI GGCC 7 cut(s) 10, 35, 193, 527, 703, 708, 837
Bso31I GGTCTC 1 cut(s) 723
BspACI CCGC 2 cut(s) 32, 430
BspANI GGCC 7 cut(s) 10, 35, 193, 527, 703, 708, 837
BspCNI CTCAG 3 cut(s) 466, 565, 723
BspLI GGNNCC 2 cut(s) 133, 768
BspMAI CTGCAG 1 cut(s) 325
BspT107I GGYRCC 1 cut(s) 766
BspTNI GGTCTC 1 cut(s) 723
BsrBI CCGCTC 1 cut(s) 430
BsrI ACTGG 2 cut(s) 64, 182
BssECI CCNNGG 3 cut(s) 11, 528, 887
BssT1I CCWWGG 3 cut(s) 11, 528, 887
Bst2UI CCWGG 3 cut(s) 395, 705, 834
Bst4CI ACNGT 5 cut(s) 231, 338, 558, 599, 734
Bst6I CTCTTC 2 cut(s) 159, 338
BstDEI CTNAG 7 cut(s) 360, 377, 474, 573, 710, 773, 896
BstEII GGTNACC 1 cut(s) 437
BstF5I GGATG 3 cut(s) 133, 277, 838
BstH2I RGCGCY 1 cut(s) 614
BstHHI GCGC 1 cut(s) 613
BstMAI GTCTC 1 cut(s) 723
BstMWI GCNNNNNNNGC 2 cut(s) 329, 889
BstNI CCWGG 3 cut(s) 395, 705, 834
BstPI GGTNACC 1 cut(s) 437
BstSCI CCNGG 4 cut(s) 393, 606, 703, 832
BstSFI CTRYAG 2 cut(s) 321, 858
BstV1I GCAGC 2 cut(s) 36, 385
BstV2I GAAGAC 2 cut(s) 11, 631
BsuRI GGCC 7 cut(s) 10, 35, 193, 527, 703, 708, 837
BtsCI GGATG 3 cut(s) 133, 277, 838
BtsI GCAGTG 1 cut(s) 330
BtsIMutI CAGTG 3 cut(s) 227, 330, 343
CaiI CAGNNNCTG 1 cut(s) 903
CfoI GCGC 1 cut(s) 613
Cfr13I GGNCC 3 cut(s) 34, 132, 191
Csp6I GTAC 5 cut(s) 391, 617, 648, 767, 864
CviAII CATG 2 cut(s) 651, 659
CviQI GTAC 5 cut(s) 391, 617, 648, 767, 864
DdeI CTNAG 7 cut(s) 360, 377, 474, 573, 710, 773, 896
DraIII CACNNNGTG 1 cut(s) 43
EaeI YGGCCR 1 cut(s) 835
Eam1104I CTCTTC 2 cut(s) 159, 338
EarI CTCTTC 2 cut(s) 159, 338
Eco130I CCWWGG 3 cut(s) 11, 528, 887
Eco31I GGTCTC 1 cut(s) 723
Eco32I GATATC 1 cut(s) 52
Eco47I GGWCC 1 cut(s) 132
Eco57I CTGAAG 1 cut(s) 138
Eco91I GGTNACC 1 cut(s) 437
EcoO65I GGTNACC 1 cut(s) 437
EcoRII CCWGG 3 cut(s) 393, 703, 832
EcoRV GATATC 1 cut(s) 52
EcoT14I CCWWGG 3 cut(s) 11, 528, 887
ErhI CCWWGG 3 cut(s) 11, 528, 887
FaeI CATG 2 cut(s) 654, 662
FatI CATG 2 cut(s) 650, 658
FauNDI CATATG 1 cut(s) 501
Fnu4HI GCNGC 3 cut(s) 25, 33, 399
FokI GGATG 3 cut(s) 140, 284, 825
Fsp4HI GCNGC 3 cut(s) 25, 33, 399
FspBI CTAG 3 cut(s) 582, 614, 888
GlaI GCGC 1 cut(s) 612
GluI GCNGC 3 cut(s) 25, 33, 399
GsuI CTGGAG 1 cut(s) 504
HaeII RGCGCY 1 cut(s) 614
HaeIII GGCC 7 cut(s) 10, 35, 193, 527, 703, 708, 837
HapII CCGG 1 cut(s) 608
HhaI GCGC 1 cut(s) 613
Hin1II CATG 2 cut(s) 654, 662
Hin6I GCGC 1 cut(s) 611
HinP1I GCGC 1 cut(s) 611
HincII GTYRAC 1 cut(s) 187
HindII GTYRAC 1 cut(s) 187
HinfI GANTC 6 cut(s) 16, 169, 245, 317, 421, 470
HpaII CCGG 1 cut(s) 608
HphI GGTGA 1 cut(s) 467
Hpy166II GTNNAC 2 cut(s) 187, 602
Hpy188I TCNGA 8 cut(s) 82, 244, 271, 316, 420, 475, 553, 905
Hpy188III TCNNGA 4 cut(s) 116, 135, 249, 425
Hpy8I GTNNAC 2 cut(s) 187, 602
HpyAV CCTTC 3 cut(s) 114, 427, 886
HpyCH4III ACNGT 5 cut(s) 231, 338, 558, 599, 734
HpyCH4V TGCA 5 cut(s) 215, 323, 401, 505, 743
HpyF10VI GCNNNNNNNGC 2 cut(s) 329, 889
HpyF3I CTNAG 7 cut(s) 360, 377, 474, 573, 710, 773, 896
Hsp92II CATG 2 cut(s) 654, 662
HspAI GCGC 1 cut(s) 611
KpnI GGTACC 1 cut(s) 770
Lsp1109I GCAGC 2 cut(s) 36, 385
MaeI CTAG 3 cut(s) 582, 614, 888
MaeIII GTNAC 2 cut(s) 43, 437
MbiI CCGCTC 1 cut(s) 430
MboII GAAGA 7 cut(s) 11, 131, 176, 195, 355, 636, 699
MlsI TGGCCA 1 cut(s) 837
MluCI AATT 2 cut(s) 585, 868
MluNI TGGCCA 1 cut(s) 837
MlyI GAGTC 5 cut(s) 25, 178, 254, 430, 464
MmeI TCCRAC 1 cut(s) 706
Mox20I TGGCCA 1 cut(s) 837
MscI TGGCCA 1 cut(s) 837
Msp20I TGGCCA 1 cut(s) 837
MspI CCGG 1 cut(s) 608
MspR9I CCNGG 4 cut(s) 395, 608, 705, 834
MvaI CCWGG 3 cut(s) 395, 705, 834
MwoI GCNNNNNNNGC 2 cut(s) 329, 889
NciI CCSGG 1 cut(s) 608
NdeI CATATG 1 cut(s) 501
NlaIII CATG 2 cut(s) 654, 662
NlaIV GGNNCC 2 cut(s) 133, 768
NmuCI GTSAC 1 cut(s) 43
PfeI GAWTC 1 cut(s) 317
PkrI GCNGC 3 cut(s) 26, 34, 400
PleI GAGTC 5 cut(s) 24, 177, 253, 429, 464
PpsI GAGTC 5 cut(s) 24, 177, 253, 429, 464
Psp6I CCWGG 3 cut(s) 393, 703, 832
PspEI GGTNACC 1 cut(s) 437
PspGI CCWGG 3 cut(s) 393, 703, 832
PspN4I GGNNCC 2 cut(s) 133, 768
PspPI GGNCC 3 cut(s) 34, 132, 191
PsrI GAACNNNNNNTAC 4 cut(s) 546, 578, 793, 825
PstI CTGCAG 1 cut(s) 325
PstNI CAGNNNCTG 1 cut(s) 903
RsaI GTAC 5 cut(s) 392, 618, 649, 768, 865
RsaNI GTAC 5 cut(s) 391, 617, 648, 767, 864
SatI GCNGC 3 cut(s) 25, 33, 399
Sau96I GGNCC 3 cut(s) 34, 132, 191
SchI GAGTC 5 cut(s) 25, 178, 254, 430, 464
ScrFI CCNGG 4 cut(s) 395, 608, 705, 834
SetI ASST 9 cut(s) 178, 282, 444, 457, 742, 768, 772, 835, 865
SfcI CTRYAG 2 cut(s) 321, 858
SinI GGWCC 1 cut(s) 132
Sse9I AATT 2 cut(s) 585, 868
SsiI CCGC 2 cut(s) 32, 430
SspMI CTAG 3 cut(s) 582, 614, 888
StyD4I CCNGG 4 cut(s) 393, 606, 703, 832
StyI CCWWGG 3 cut(s) 11, 528, 887
TaaI ACNGT 5 cut(s) 231, 338, 558, 599, 734
TasI AATT 2 cut(s) 585, 868
TatI WGTACW 2 cut(s) 616, 647
TauI GCSGC 1 cut(s) 35
TfiI GAWTC 1 cut(s) 317
TscAI CASTG 3 cut(s) 234, 330, 343
TseFI GTSAC 1 cut(s) 43
TseI GCWGC 2 cut(s) 24, 398
Tsp45I GTSAC 1 cut(s) 43
TspDTI ATGAA 3 cut(s) 195, 288, 524
TspRI CASTG 3 cut(s) 234, 330, 343
VpaK11BI GGWCC 1 cut(s) 132
XapI RAATTY 1 cut(s) 868
XmaJI CCTAGG 1 cut(s) 887
XspI CTAG 3 cut(s) 582, 614, 888
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.