Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0001099

Physical Location & Seq

Genomic Coordinates Reverse (-)

25223616 .. 25227406

Gene Structure 3791 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G019210.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1119 bp

ATGGGTAGGCCAAGGAGTCTTCGCAGCAAAGCGGCCCACTTTGTGACTGATATCACTACTGGATTGCTCAACCCCATTTCTGACAAACCCTCCAAACCCTCTCCTTCTCCCCCTCCTGAAGATGTGGATGGGTCCAGAGGAAGTCAAAATGGAACAATGAGTGAAGAGAGTCCAGCTAATCCAGTTGACGGGCCTGACACTTCTTCATTTACTGCATTTCTCTACTCACTGTTATCGTCATCAGAGTCGGGAGATAAGAGCAAAAGTTCGGATGAACAGGTTGATGACCAAATAGATAAGAGCAACTCATTGTCTGATTCTGCAGTGAAAGCAAACAGTGGGAAGAGAAGTTTGTTTTCTAAGGGGAAACACACGCTTAGTAAAGCTATGTACCAGGCTGCAAGATTTGGTGGGTATCGGAGTCAAGAGCGGAAGGGTAACCTTGATGTAAAAGGTGATGATGGGAATGACTCTGAGTTCGCTGGAGTTGAGATGAGGCATATGCAGAAACCACAAAAGCCTGCGGCCTTGGTTCATTTGACAGACATCTCTGAACCGTCTTTACTTCTTACTGAGAAAACTAGAATTGCTCTTTACAGTTCACTCCCGGCGCTAGTACAGGGAAGACGATGGTTGTTACTATATAGTACATGGAGGCATGGCATATCACTTTCAACCCTATACAGAAGAAGTATGCTTTGGCCTGGCCTCAGTTTGCTGGTTGTTGGAGACCGTAAAGGTGCAGTTTTTGGTGGCTTGGTGGAGGTACCTCTAAGACCAACCAACAAGAAGTATCAGGGAACAAATGATACATTTGTTTTCACAAATACACCTGGCCATCCTGTTATATATCGCCCTACAGGTGCCAACCGCTATTTCACATTGTGCGCTACTGACTTTTTAGCTATTGGTGGGGGTGGTCATTTTGCACTCTATTTGAATAGTGATCTATTGAGTGGATCAAGTTCAGTTTCAGAAACCTATGGGAATCCATGTCTTGCAAACTCAGAAGACTTTGATGTGAAAGAAGTAGAGTTATGGGGTTTTGTGTATGCTACTAAGTATGAGGAAGTACTTGCTCAAAGTCGTATGGAGGCACCTGGGATTTGCCGATGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TLD

Protein Analysis

372

Amino Acids

40.61

Weight (kDa)

7.7

Isoelectric Point (pI)

46.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TLD	PF07534	184 - 349	4.1e-40	TLDc domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001099)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39870 AT4G39870
fragaria_vesca	FvH4_1g20920 FvH4_1g20920 FvH4_1g20920 FvH4_1g20920 FvH4_1g20920 FvH4_1g20920 FvH4_1g20920
malus_domestica	MD15G1324300.v1.1
prunus_persica	Prupe.6G186700_v2.0.a1 Prupe.6G186700_v2.0.a1 Prupe.6G186700_v2.0.a1
pyrus_communis	pycom15g28620
rosa_chinensis	RchiOBHm_Chr2g0113781 RchiOBHm_Chr2g0113881 RchiOBHm_Chr2g0113891 RchiOBHm_Chr2g0113971 RchiOBHm_Chr2g0114361 RchiOBHm_Chr2g0114391
rosa_laevigata	RLG00000018083 RLG00000018090 RLG00000018093 RLG00000018098
rosa_multiflora	Rmu_sc0000431.1_g000017 Rmu_sc0000431.1_g000031 Rmu_sc0000881.1_g000009 Rmu_sc0009639.1_g000003 Rmu_sc0010543.1_g000005 Rmu_sc0016457.1_g000001
rosa_roxburghii	Rroxscaffold_2G00128310 Rroxscaffold_2G00130120
rosa_rugosa	Rorug02G0188800 Rorug02G0189600 Rorug02G0190200
rosa_samantha	Rh1BG230200 Rh2CG248400 Rh2CG248700 Rh2CG249200 Rh2CG250600 Rh2CG250800 Rh2DG250900 Rh2DG251100 Rh2DG251600 Rh2DG251700 Rh2DG251800 Rh2DG252300 Rh2DG252700 Rh2DG253900 Rh2DG254000 Rh2DG254500 Rh2DG255100
rosa_wichuraiana	Rw2G018480 Rw2G019000 Rw2G019070 Rw2G019140 Rw2G019170 Rw2G019210 Rw6G015390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	766
AccB1I	GGYRCC	3 cut(s)	766, 863, 1096
AccBSI	CCGCTC	1 cut(s)	430
AciI	CCGC	4 cut(s)	32, 430, 524, 871
AclWI	GGATC	1 cut(s)	967
AcoI	YGGCCR	1 cut(s)	835
AcuI	CTGAAG	1 cut(s)	138
AdeI	CACNNNGTG	2 cut(s)	43, 885
AfaI	GTAC	5 cut(s)	392, 618, 649, 768, 1074
AfiI	CCNNNNNNNGG	1 cut(s)	188
AgsI	TTSAA	2 cut(s)	675, 940
AjnI	CCWGG	4 cut(s)	393, 703, 832, 1099
AjuI	GAANNNNNNNTTGG	4 cut(s)	682, 714, 860, 892
AluBI	AGCT	3 cut(s)	176, 386, 905
AluI	AGCT	3 cut(s)	176, 386, 905
Alw26I	GTCTC	1 cut(s)	723
AlwI	GGATC	1 cut(s)	967
AoxI	GGCC	7 cut(s)	8, 33, 191, 525, 701, 706, 835
ApeKI	GCWGC	2 cut(s)	24, 398
ArsI	GACNNNNNNTTYG	2 cut(s)	461, 493
Asp718I	GGTACC	1 cut(s)	766
AspLEI	GCGC	2 cut(s)	613, 890
AspS9I	GGNCC	3 cut(s)	34, 132, 191
AsuC2I	CCSGG	1 cut(s)	608
AsuHPI	GGTGA	1 cut(s)	467
AvaII	GGWCC	1 cut(s)	132
BaeI	ACNNNNGTAYC	2 cut(s)	801, 834
BalI	TGGCCA	1 cut(s)	837
BanI	GGYRCC	3 cut(s)	766, 863, 1096
BbsI	GAAGAC	3 cut(s)	11, 631, 1017
BbvI	GCAGC	2 cut(s)	36, 385
BccI	CCATC	5 cut(s)	122, 455, 624, 846, 1107
BciT130I	CCWGG	4 cut(s)	395, 705, 834, 1101
BcnI	CCSGG	1 cut(s)	608
BcoDI	GTCTC	1 cut(s)	723
BfaI	CTAG	2 cut(s)	582, 614
BfmI	CTRYAG	2 cut(s)	321, 858
BfoI	RGCGCY	1 cut(s)	614
BisI	GCNGC	4 cut(s)	25, 33, 399, 525
BlsI	GCNGC	4 cut(s)	26, 34, 400, 526
BmcAI	AGTACT	1 cut(s)	1074
Bme1390I	CCNGG	5 cut(s)	395, 608, 705, 834, 1101
Bme18I	GGWCC	1 cut(s)	132
BmgT120I	GGNCC	3 cut(s)	34, 132, 191
BmiI	GGNNCC	4 cut(s)	133, 768, 865, 1098
BmrFI	CCNGG	5 cut(s)	395, 608, 705, 834, 1101
BpiI	GAAGAC	3 cut(s)	11, 631, 1017
BpmI	CTGGAG	1 cut(s)	504
BpuMI	CCSGG	1 cut(s)	608
BsaI	GGTCTC	1 cut(s)	723
BsaJI	CCNNGG	3 cut(s)	11, 528, 1100
BsaXI	ACNNNNNCTCC	2 cut(s)	74, 104
Bsc4I	CCNNNNNNNGG	1 cut(s)	188
Bse1I	ACTGG	2 cut(s)	64, 182
BseBI	CCWGG	4 cut(s)	395, 705, 834, 1101
BseDI	CCNNGG	3 cut(s)	11, 528, 1100
BseGI	GGATG	3 cut(s)	133, 277, 838
BseLI	CCNNNNNNNGG	1 cut(s)	188
BseMII	CTCAG	4 cut(s)	465, 564, 724, 1020
BseNI	ACTGG	2 cut(s)	64, 182
BseXI	GCAGC	2 cut(s)	36, 385
BsgI	GTGCAG	1 cut(s)	762
BshFI	GGCC	7 cut(s)	10, 35, 193, 527, 703, 708, 837
BshNI	GGYRCC	3 cut(s)	766, 863, 1096
BsiSI	CCGG	1 cut(s)	608
BslI	CCNNNNNNNGG	1 cut(s)	188
BsmAI	GTCTC	1 cut(s)	723
BsnI	GGCC	7 cut(s)	10, 35, 193, 527, 703, 708, 837
Bso31I	GGTCTC	1 cut(s)	723
Bsp143I	GATC	2 cut(s)	946, 959
BspACI	CCGC	4 cut(s)	32, 430, 524, 871
BspANI	GGCC	7 cut(s)	10, 35, 193, 527, 703, 708, 837
BspCNI	CTCAG	4 cut(s)	466, 565, 723, 1019
BspLI	GGNNCC	4 cut(s)	133, 768, 865, 1098
BspMAI	CTGCAG	1 cut(s)	325
BspPI	GGATC	1 cut(s)	967
BspT107I	GGYRCC	3 cut(s)	766, 863, 1096
BspTNI	GGTCTC	1 cut(s)	723
BsrBI	CCGCTC	1 cut(s)	430
BsrI	ACTGG	2 cut(s)	64, 182
BssECI	CCNNGG	3 cut(s)	11, 528, 1100
BssMI	GATC	2 cut(s)	946, 959
BssT1I	CCWWGG	2 cut(s)	11, 528
Bst2UI	CCWGG	4 cut(s)	395, 705, 834, 1101
Bst4CI	ACNGT	5 cut(s)	231, 338, 558, 599, 734
Bst6I	CTCTTC	2 cut(s)	159, 338
BstC8I	GCNNGC	1 cut(s)	522
BstDEI	CTNAG	8 cut(s)	360, 377, 474, 573, 710, 773, 1006, 1059
BstEII	GGTNACC	1 cut(s)	437
BstF5I	GGATG	3 cut(s)	133, 277, 838
BstH2I	RGCGCY	1 cut(s)	614
BstHHI	GCGC	2 cut(s)	613, 890
BstKTI	GATC	2 cut(s)	949, 962
BstMAI	GTCTC	1 cut(s)	723
BstMBI	GATC	2 cut(s)	946, 959
BstMWI	GCNNNNNNNGC	1 cut(s)	329
BstNI	CCWGG	4 cut(s)	395, 705, 834, 1101
BstPI	GGTNACC	1 cut(s)	437
BstSCI	CCNGG	5 cut(s)	393, 606, 703, 832, 1099
BstSFI	CTRYAG	2 cut(s)	321, 858
BstV1I	GCAGC	2 cut(s)	36, 385
BstV2I	GAAGAC	3 cut(s)	11, 631, 1017
BsuRI	GGCC	7 cut(s)	10, 35, 193, 527, 703, 708, 837
BtsCI	GGATG	3 cut(s)	133, 277, 838
BtsI	GCAGTG	1 cut(s)	330
BtsIMutI	CAGTG	3 cut(s)	227, 330, 343
Cac8I	GCNNGC	1 cut(s)	522
CfoI	GCGC	2 cut(s)	613, 890
Cfr13I	GGNCC	3 cut(s)	34, 132, 191
Csp6I	GTAC	5 cut(s)	391, 617, 648, 767, 1073
CviAII	CATG	3 cut(s)	651, 659, 993
CviQI	GTAC	5 cut(s)	391, 617, 648, 767, 1073
DdeI	CTNAG	8 cut(s)	360, 377, 474, 573, 710, 773, 1006, 1059
DpnI	GATC	2 cut(s)	948, 961
DpnII	GATC	2 cut(s)	946, 959
DraIII	CACNNNGTG	2 cut(s)	43, 885
EaeI	YGGCCR	1 cut(s)	835
Eam1104I	CTCTTC	2 cut(s)	159, 338
EarI	CTCTTC	2 cut(s)	159, 338
Eco130I	CCWWGG	2 cut(s)	11, 528
Eco31I	GGTCTC	1 cut(s)	723
Eco32I	GATATC	1 cut(s)	52
Eco47I	GGWCC	1 cut(s)	132
Eco57I	CTGAAG	1 cut(s)	138
Eco91I	GGTNACC	1 cut(s)	437
EcoO65I	GGTNACC	1 cut(s)	437
EcoRII	CCWGG	4 cut(s)	393, 703, 832, 1099
EcoRV	GATATC	1 cut(s)	52
EcoT14I	CCWWGG	2 cut(s)	11, 528
ErhI	CCWWGG	2 cut(s)	11, 528
FaeI	CATG	3 cut(s)	654, 662, 996
FatI	CATG	3 cut(s)	650, 658, 992
FauNDI	CATATG	1 cut(s)	501
Fnu4HI	GCNGC	4 cut(s)	25, 33, 399, 525
FokI	GGATG	3 cut(s)	140, 284, 825
Fsp4HI	GCNGC	4 cut(s)	25, 33, 399, 525
FspBI	CTAG	2 cut(s)	582, 614
GlaI	GCGC	2 cut(s)	612, 889
GluI	GCNGC	4 cut(s)	25, 33, 399, 525
GsuI	CTGGAG	1 cut(s)	504
HaeII	RGCGCY	1 cut(s)	614
HaeIII	GGCC	7 cut(s)	10, 35, 193, 527, 703, 708, 837
HapII	CCGG	1 cut(s)	608
HhaI	GCGC	2 cut(s)	613, 890
Hin1II	CATG	3 cut(s)	654, 662, 996
Hin6I	GCGC	2 cut(s)	611, 888
HinP1I	GCGC	2 cut(s)	611, 888
HincII	GTYRAC	1 cut(s)	187
HindII	GTYRAC	1 cut(s)	187
HinfI	GANTC	7 cut(s)	16, 169, 245, 317, 421, 470, 988
HpaII	CCGG	1 cut(s)	608
HphI	GGTGA	1 cut(s)	467
Hpy166II	GTNNAC	2 cut(s)	187, 602
Hpy188I	TCNGA	9 cut(s)	82, 244, 271, 316, 420, 475, 553, 976, 1009
Hpy188III	TCNNGA	4 cut(s)	116, 135, 249, 425
Hpy8I	GTNNAC	2 cut(s)	187, 602
HpyAV	CCTTC	2 cut(s)	114, 427
HpyCH4III	ACNGT	5 cut(s)	231, 338, 558, 599, 734
HpyCH4V	TGCA	7 cut(s)	215, 323, 401, 505, 743, 929, 1001
HpyF10VI	GCNNNNNNNGC	1 cut(s)	329
HpyF3I	CTNAG	8 cut(s)	360, 377, 474, 573, 710, 773, 1006, 1059
Hsp92II	CATG	3 cut(s)	654, 662, 996
HspAI	GCGC	2 cut(s)	611, 888
KpnI	GGTACC	1 cut(s)	770
Kzo9I	GATC	2 cut(s)	946, 959
Lsp1109I	GCAGC	2 cut(s)	36, 385
MaeI	CTAG	2 cut(s)	582, 614
MaeIII	GTNAC	3 cut(s)	43, 437, 636
MalI	GATC	2 cut(s)	948, 961
MbiI	CCGCTC	1 cut(s)	430
MboI	GATC	2 cut(s)	946, 959
MboII	GAAGA	8 cut(s)	11, 131, 176, 195, 355, 636, 699, 1022
MlsI	TGGCCA	1 cut(s)	837
MluCI	AATT	1 cut(s)	585
MluNI	TGGCCA	1 cut(s)	837
MlyI	GAGTC	5 cut(s)	25, 178, 254, 430, 464
MmeI	TCCRAC	1 cut(s)	706
Mox20I	TGGCCA	1 cut(s)	837
MscI	TGGCCA	1 cut(s)	837
Msp20I	TGGCCA	1 cut(s)	837
MspI	CCGG	1 cut(s)	608
MspR9I	CCNGG	5 cut(s)	395, 608, 705, 834, 1101
MvaI	CCWGG	4 cut(s)	395, 705, 834, 1101
MwoI	GCNNNNNNNGC	1 cut(s)	329
NciI	CCSGG	1 cut(s)	608
NdeI	CATATG	1 cut(s)	501
NdeII	GATC	2 cut(s)	946, 959
NlaIII	CATG	3 cut(s)	654, 662, 996
NlaIV	GGNNCC	4 cut(s)	133, 768, 865, 1098
NmuCI	GTSAC	1 cut(s)	43
PfeI	GAWTC	2 cut(s)	317, 988
PkrI	GCNGC	4 cut(s)	26, 34, 400, 526
PleI	GAGTC	5 cut(s)	24, 177, 253, 429, 464
PpsI	GAGTC	5 cut(s)	24, 177, 253, 429, 464
Psp6I	CCWGG	4 cut(s)	393, 703, 832, 1099
PspEI	GGTNACC	1 cut(s)	437
PspGI	CCWGG	4 cut(s)	393, 703, 832, 1099
PspN4I	GGNNCC	4 cut(s)	133, 768, 865, 1098
PspPI	GGNCC	3 cut(s)	34, 132, 191
PsrI	GAACNNNNNNTAC	4 cut(s)	546, 578, 793, 825
PstI	CTGCAG	1 cut(s)	325
RsaI	GTAC	5 cut(s)	392, 618, 649, 768, 1074
RsaNI	GTAC	5 cut(s)	391, 617, 648, 767, 1073
SatI	GCNGC	4 cut(s)	25, 33, 399, 525
Sau3AI	GATC	2 cut(s)	946, 959
Sau96I	GGNCC	3 cut(s)	34, 132, 191
ScaI	AGTACT	1 cut(s)	1074
SchI	GAGTC	5 cut(s)	25, 178, 254, 430, 464
ScrFI	CCNGG	5 cut(s)	395, 608, 705, 834, 1101
SfcI	CTRYAG	2 cut(s)	321, 858
SinI	GGWCC	1 cut(s)	132
Sse9I	AATT	1 cut(s)	585
SsiI	CCGC	4 cut(s)	32, 430, 524, 871
SspMI	CTAG	2 cut(s)	582, 614
StyD4I	CCNGG	5 cut(s)	393, 606, 703, 832, 1099
StyI	CCWWGG	2 cut(s)	11, 528
TaaI	ACNGT	5 cut(s)	231, 338, 558, 599, 734
TasI	AATT	1 cut(s)	585
TatI	WGTACW	3 cut(s)	616, 647, 1072
TauI	GCSGC	2 cut(s)	35, 527
TfiI	GAWTC	2 cut(s)	317, 988
TscAI	CASTG	3 cut(s)	234, 330, 343
TseFI	GTSAC	1 cut(s)	43
TseI	GCWGC	2 cut(s)	24, 398
Tsp45I	GTSAC	1 cut(s)	43
TspDTI	ATGAA	3 cut(s)	195, 288, 524
TspRI	CASTG	3 cut(s)	234, 330, 343
VpaK11BI	GGWCC	1 cut(s)	132
XspI	CTAG	2 cut(s)	582, 614
ZrmI	AGTACT	1 cut(s)	1074

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.