FvH4_1g20920

Oxidation resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0001099
Physical Location & Seq
Reverse (-)
13038311 .. 13043303
4993 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g20920.t4

Sequence Viewer

Length: 1122 bp
ATGGGTAGGCCACGCAGTCTCCGCAGCAAAGCGGCCCACTTTGTCACTGATATCACTACTGGATTGCTCAACCCCATCTCTGACAAACCCTCCAAACCCTCTCCTCCTCCTCCTCCTGAGGAAGATGTGGAGGGGTCAAAAGGAAGTCAAAATGGGTCAATGAGTGAGGAGAGTGGAGCTACTCCGGTTGATGGGCCTGACACTTCTTCATTTACTGCGTTTCTGTACTCGTTTTTAGCGACATCGGAGTCGGGAGATAAGAGTAAAAGTTCAGATGAACAGGTTGATGAGCAAATGGATAAGAGCAATTCTTCGTCTGATTTGGTGGTGAAAGCCAACGGTGGGAAGAGAAGCTTCTTTTCTAAGGGGAAGCACACGCTTGGGAAAGCTATGTACCAGGCTGCAAGATTTGGCGGTTACCGGGGTCAAGAGCGGAAGGGTAGTATTGCTGTGAAAGGTGATGACGGGAATGAGTCTGAGTTTGCTGGAGTGGAGATGAGGCATTTGCAGAAAGCACAGAAGCCTGTGGCATTGGTTCATCTGCCAGACATCTCAGAGCCTTCTTTACTTCTTACTGAGAAAGCTAGAGTTGCTCTTTACAGTTCATTCCCGGTGCTAGTTCAGGGAAGACGATGGTTGTTACTGTATAGTACATGGAGGCATGGCATATCACTTTCAACCCTATACAGAAGGAGTATGCTTTGGCCTGGCCTCAGTTTGCTGGTTGTTGGAGACCGTAAAGGTGCAGTTTTTGGTGGCTTGGTGGAGGCACCTCTAAGACCAACCAACAAGAAGTATCAGGGAACAAATGATACATTTGTTTTCACAAATACATCTGGCGATCCTGTTATATATCGCCCTACAGGTGCCAACCGCTACTTCACATTGTGCGCTACTGACTTTTTAGCTATTGGCGGGGGTGGTCATTTCGCACTCTATTTGAACAGTGATCTTTTGAGCGGATCAAGTTCAGTTTCAGAAACCTATGGCAATCCATGTCTTGCAAACTCAGAAGACTTTGATGTGAAAGAAGTAGAGTTATGGGGCTTTGTGTATGCTACCAAGTATGAGGAAGTACTTGCTCAAAGCCGTATGGAGGCACCTGGTATTTGCCGATGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TLD

Protein Analysis

374

Amino Acids

40.58

Weight (kDa)

7.02

Isoelectric Point (pI)

43.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TLD PF07534 185 - 347 1.6e-36 TLDc domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 247
AccB1I GGYRCC 3 cut(s) 769, 866, 1099
AccBSI CCGCTC 2 cut(s) 433, 960
AciI CCGC 7 cut(s) 22, 32, 414, 433, 874, 915, 960
AclWI GGATC 2 cut(s) 836, 970
AdeI CACNNNGTG 1 cut(s) 888
AfaI GTAC 4 cut(s) 227, 395, 652, 1077
AfiI CCNNNNNNNGG 3 cut(s) 191, 342, 1096
AgsI TTSAA 2 cut(s) 678, 943
AjnI CCWGG 3 cut(s) 396, 706, 1102
AjuI GAANNNNNNNTTGG 2 cut(s) 863, 895
AluBI AGCT 5 cut(s) 179, 354, 389, 584, 908
AluI AGCT 5 cut(s) 179, 354, 389, 584, 908
Alw26I GTCTC 2 cut(s) 23, 726
AlwI GGATC 2 cut(s) 836, 970
AoxI GGCC 5 cut(s) 8, 33, 194, 704, 709
ApeKI GCWGC 2 cut(s) 24, 401
AspLEI GCGC 1 cut(s) 893
AspS9I GGNCC 2 cut(s) 34, 194
AsuC2I CCSGG 2 cut(s) 422, 611
AsuHPI GGTGA 2 cut(s) 340, 470
AxyI CCTNAGG 1 cut(s) 117
BaeI ACNNNNGTAYC 2 cut(s) 804, 837
BanI GGYRCC 3 cut(s) 769, 866, 1099
BbsI GAAGAC 2 cut(s) 634, 1020
BbvI GCAGC 2 cut(s) 36, 388
BccI CCATC 4 cut(s) 83, 185, 627, 1110
BceAI ACGGC 1 cut(s) 1074
BciT130I CCWGG 3 cut(s) 398, 708, 1104
BcnI CCSGG 2 cut(s) 422, 611
BcoDI GTCTC 2 cut(s) 23, 726
BfaI CTAG 2 cut(s) 585, 617
BfmI CTRYAG 1 cut(s) 861
BisI GCNGC 3 cut(s) 25, 33, 402
BlsI GCNGC 3 cut(s) 26, 34, 403
BmcAI AGTACT 1 cut(s) 1077
Bme1390I CCNGG 5 cut(s) 398, 422, 611, 708, 1104
BmgT120I GGNCC 2 cut(s) 34, 194
BmiI GGNNCC 3 cut(s) 771, 868, 1101
BmrFI CCNGG 5 cut(s) 398, 422, 611, 708, 1104
BpiI GAAGAC 2 cut(s) 634, 1020
BpmI CTGGAG 1 cut(s) 507
BpuMI CCSGG 2 cut(s) 422, 611
BsaI GGTCTC 1 cut(s) 726
BsaJI CCNNGG 1 cut(s) 421
BsaWI WCCGGW 1 cut(s) 184
BsaXI ACNNNNNCTCC 3 cut(s) 33, 74, 104
Bsc4I CCNNNNNNNGG 3 cut(s) 191, 342, 1096
Bse1I ACTGG 1 cut(s) 64
Bse21I CCTNAGG 1 cut(s) 117
BseBI CCWGG 3 cut(s) 398, 708, 1104
BseDI CCNNGG 1 cut(s) 421
BseLI CCNNNNNNNGG 3 cut(s) 191, 342, 1096
BseMII CTCAG 6 cut(s) 108, 468, 567, 567, 727, 1023
BseNI ACTGG 1 cut(s) 64
BseRI GAGGAG 5 cut(s) 93, 96, 99, 102, 182
BseXI GCAGC 2 cut(s) 36, 388
BsgI GTGCAG 1 cut(s) 765
BshFI GGCC 5 cut(s) 10, 35, 196, 706, 711
BshNI GGYRCC 3 cut(s) 769, 866, 1099
BsiSI CCGG 3 cut(s) 185, 421, 611
BslI CCNNNNNNNGG 3 cut(s) 191, 342, 1096
BsmAI GTCTC 2 cut(s) 23, 726
BsnI GGCC 5 cut(s) 10, 35, 196, 706, 711
Bso31I GGTCTC 1 cut(s) 726
Bsp143I GATC 3 cut(s) 841, 949, 962
BspACI CCGC 7 cut(s) 22, 32, 414, 433, 874, 915, 960
BspANI GGCC 5 cut(s) 10, 35, 196, 706, 711
BspCNI CTCAG 6 cut(s) 109, 469, 566, 568, 726, 1022
BspLI GGNNCC 3 cut(s) 771, 868, 1101
BspPI GGATC 2 cut(s) 836, 970
BspT107I GGYRCC 3 cut(s) 769, 866, 1099
BspTNI GGTCTC 1 cut(s) 726
BsrBI CCGCTC 2 cut(s) 433, 960
BsrI ACTGG 1 cut(s) 64
BssECI CCNNGG 1 cut(s) 421
BssMI GATC 3 cut(s) 841, 949, 962
Bst2UI CCWGG 3 cut(s) 398, 708, 1104
Bst4CI ACNGT 5 cut(s) 341, 602, 645, 737, 947
Bst6I CTCTTC 1 cut(s) 341
BstDEI CTNAG 8 cut(s) 117, 363, 477, 553, 576, 713, 776, 1009
BstEII GGTNACC 1 cut(s) 416
BstHHI GCGC 1 cut(s) 893
BstKTI GATC 3 cut(s) 844, 952, 965
BstMAI GTCTC 2 cut(s) 23, 726
BstMBI GATC 3 cut(s) 841, 949, 962
BstMWI GCNNNNNNNGC 2 cut(s) 21, 590
BstNI CCWGG 3 cut(s) 398, 708, 1104
BstPI GGTNACC 1 cut(s) 416
BstSCI CCNGG 5 cut(s) 396, 420, 609, 706, 1102
BstSFI CTRYAG 1 cut(s) 861
BstV1I GCAGC 2 cut(s) 36, 388
BstV2I GAAGAC 2 cut(s) 634, 1020
Bsu36I CCTNAGG 1 cut(s) 117
BsuRI GGCC 5 cut(s) 10, 35, 196, 706, 711
BtsIMutI CAGTG 2 cut(s) 45, 952
CfoI GCGC 1 cut(s) 893
Cfr13I GGNCC 2 cut(s) 34, 194
CsiI ACCWGGT 1 cut(s) 1102
Csp6I GTAC 4 cut(s) 226, 394, 651, 1076
CviAII CATG 3 cut(s) 654, 662, 996
CviQI GTAC 4 cut(s) 226, 394, 651, 1076
DdeI CTNAG 8 cut(s) 117, 363, 477, 553, 576, 713, 776, 1009
DpnI GATC 3 cut(s) 843, 951, 964
DpnII GATC 3 cut(s) 841, 949, 962
DraIII CACNNNGTG 1 cut(s) 888
DrdI GACNNNNNNGTC 1 cut(s) 247
DseDI GACNNNNNNGTC 1 cut(s) 247
Eam1104I CTCTTC 1 cut(s) 341
EarI CTCTTC 1 cut(s) 341
Eco31I GGTCTC 1 cut(s) 726
Eco32I GATATC 1 cut(s) 52
Eco81I CCTNAGG 1 cut(s) 117
Eco91I GGTNACC 1 cut(s) 416
EcoO65I GGTNACC 1 cut(s) 416
EcoRII CCWGG 3 cut(s) 396, 706, 1102
EcoRV GATATC 1 cut(s) 52
FaeI CATG 3 cut(s) 657, 665, 999
FalI AAGNNNNNCTT 2 cut(s) 338, 370
FatI CATG 3 cut(s) 653, 661, 995
FauI CCCGC 1 cut(s) 908
Fnu4HI GCNGC 3 cut(s) 25, 33, 402
Fsp4HI GCNGC 3 cut(s) 25, 33, 402
FspBI CTAG 2 cut(s) 585, 617
GlaI GCGC 1 cut(s) 892
GluI GCNGC 3 cut(s) 25, 33, 402
GsuI CTGGAG 1 cut(s) 507
HaeIII GGCC 5 cut(s) 10, 35, 196, 706, 711
HapII CCGG 3 cut(s) 185, 421, 611
HhaI GCGC 1 cut(s) 893
Hin1II CATG 3 cut(s) 657, 665, 999
Hin6I GCGC 1 cut(s) 891
HinP1I GCGC 1 cut(s) 891
HindIII AAGCTT 1 cut(s) 352
HinfI GANTC 2 cut(s) 248, 473
HpaII CCGG 3 cut(s) 185, 421, 611
HphI GGTGA 2 cut(s) 340, 470
Hpy188I TCNGA 8 cut(s) 82, 247, 274, 319, 478, 556, 979, 1012
Hpy188III TCNNGA 3 cut(s) 116, 252, 428
HpyAV CCTTC 3 cut(s) 430, 570, 684
HpyCH4III ACNGT 5 cut(s) 341, 602, 645, 737, 947
HpyCH4V TGCA 4 cut(s) 404, 508, 746, 1004
HpyF10VI GCNNNNNNNGC 2 cut(s) 21, 590
HpyF3I CTNAG 8 cut(s) 117, 363, 477, 553, 576, 713, 776, 1009
Hsp92II CATG 3 cut(s) 657, 665, 999
HspAI GCGC 1 cut(s) 891
Kzo9I GATC 3 cut(s) 841, 949, 962
LmnI GCTCC 1 cut(s) 176
Lsp1109I GCAGC 2 cut(s) 36, 388
MabI ACCWGGT 1 cut(s) 1102
MaeI CTAG 2 cut(s) 585, 617
MaeIII GTNAC 3 cut(s) 43, 416, 639
MalI GATC 3 cut(s) 843, 951, 964
MbiI CCGCTC 2 cut(s) 433, 960
MboI GATC 3 cut(s) 841, 949, 962
MboII GAAGA 6 cut(s) 134, 198, 303, 358, 639, 1025
MluCI AATT 1 cut(s) 307
MlyI GAGTC 2 cut(s) 257, 482
MmeI TCCRAC 1 cut(s) 709
MspI CCGG 3 cut(s) 185, 421, 611
MspR9I CCNGG 5 cut(s) 398, 422, 611, 708, 1104
MvaI CCWGG 3 cut(s) 398, 708, 1104
MwoI GCNNNNNNNGC 2 cut(s) 21, 590
NciI CCSGG 2 cut(s) 422, 611
NdeII GATC 3 cut(s) 841, 949, 962
NlaIII CATG 3 cut(s) 657, 665, 999
NlaIV GGNNCC 3 cut(s) 771, 868, 1101
NmuCI GTSAC 1 cut(s) 43
PcsI WCGNNNNNNNCGW 1 cut(s) 236
PkrI GCNGC 3 cut(s) 26, 34, 403
PleI GAGTC 2 cut(s) 256, 481
PpsI GAGTC 2 cut(s) 256, 481
Psp6I CCWGG 3 cut(s) 396, 706, 1102
PspEI GGTNACC 1 cut(s) 416
PspGI CCWGG 3 cut(s) 396, 706, 1102
PspN4I GGNNCC 3 cut(s) 771, 868, 1101
PspPI GGNCC 2 cut(s) 34, 194
PsrI GAACNNNNNNTAC 2 cut(s) 796, 828
RsaI GTAC 4 cut(s) 227, 395, 652, 1077
RsaNI GTAC 4 cut(s) 226, 394, 651, 1076
SatI GCNGC 3 cut(s) 25, 33, 402
Sau3AI GATC 3 cut(s) 841, 949, 962
Sau96I GGNCC 2 cut(s) 34, 194
ScaI AGTACT 1 cut(s) 1077
SchI GAGTC 2 cut(s) 257, 482
ScrFI CCNGG 5 cut(s) 398, 422, 611, 708, 1104
SexAI ACCWGGT 1 cut(s) 1102
SfcI CTRYAG 1 cut(s) 861
Sse9I AATT 1 cut(s) 307
SsiI CCGC 7 cut(s) 22, 32, 414, 433, 874, 915, 960
SspMI CTAG 2 cut(s) 585, 617
StyD4I CCNGG 5 cut(s) 396, 420, 609, 706, 1102
TaaI ACNGT 5 cut(s) 341, 602, 645, 737, 947
TasI AATT 1 cut(s) 307
TatI WGTACW 3 cut(s) 225, 650, 1075
TauI GCSGC 1 cut(s) 35
TscAI CASTG 2 cut(s) 52, 952
TseFI GTSAC 1 cut(s) 43
TseI GCWGC 2 cut(s) 24, 401
Tsp45I GTSAC 1 cut(s) 43
TspDTI ATGAA 4 cut(s) 198, 291, 527, 594
TspRI CASTG 2 cut(s) 52, 952
XspI CTAG 2 cut(s) 585, 617
ZrmI AGTACT 1 cut(s) 1077
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.