Rw2G019000

Oxidation resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0001099
Physical Location & Seq
Reverse (-)
24922761 .. 24925280
2520 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G019000.1

Sequence Viewer

Length: 867 bp
ATGAGTGAAGAGAGTCCAGCTAATCCAGTTGATGGGCCTGACACTTCTTCATTTACTGCATTTCTCTACTCACTGTTATCATCATCAGAGTCGGGAGATAAGAGCAAAAGTTCTGATGAACAGGTTGATGACCAAATAGATAAGAGCAACACATTGTCTGATTCTGCAGTGAAAGCAAACAGTGGGAAGAGAAGTTTGTTTTCTAAGGGGAAACACACGCTTAGTAAAGCTATGTACCAGGCTGCAAGATTTGGTGGGTATCGGAGTCAAGAGCGGAAGGGTAACCTTGATGTAAAAGGTGATGATGGGAGTGACTCTGAGTTCACTGGAGTTGAGATGAGGCATATGCAGAAACCACAAAAGCCTGTGGCCTTGGTTCATTTGACAGACATCTCTGAACCGTCTTTACTTCTTACTGAGAAAACTAGAATTGCTCTTTACAGTTCACTCCCGGCGCTAGTACAGGGAAGACGATGGTTGTTACTATATAGTACATGGAGGCATGGCATATCACTTTCAACCCTATACAGAAGAAGTATGCTTTGGCCTGGCCTCAGTTTGCTGGTTGTTGGAGACCGTAAAGGTGCAGTTTTTGGTGGCTTGGTGGAGGCACCTCTAAGACCAACCAACAAGAAGTATCAGGGAACAAATGATACATTTGTTTTCACAAATACACCTGGCCATCCTGTTATATATCGCCCTATAGGTGCCAACCGCTATTTCACATTGTGCGCTACTGACTTTTTAGCTATTGGTGGGGGTGGTCATTTTGCACTCTATTTGAATAGTGATCTATTGAGTGGATCAAGTTCAGTACGTTTCAGAAACCTATGGGAATCCATGTCTTGCAAACTCAGAAGACTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TLD

Protein Analysis

288

Amino Acids

31.76

Weight (kDa)

9.41

Isoelectric Point (pI)

45.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TLD PF07534 132 - 270 1.1e-29 TLDc domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 610, 707
AccB7I CCANNNNNTGG 1 cut(s) 32
AccBSI CCGCTC 1 cut(s) 274
AciI CCGC 2 cut(s) 274, 715
AclWI GGATC 1 cut(s) 811
AcoI YGGCCR 1 cut(s) 679
AdeI CACNNNGTG 1 cut(s) 729
AfaI GTAC 4 cut(s) 236, 462, 493, 816
AfiI CCNNNNNNNGG 1 cut(s) 32
AgsI TTSAA 2 cut(s) 519, 784
AjnI CCWGG 3 cut(s) 237, 547, 676
AjuI GAANNNNNNNTTGG 4 cut(s) 526, 558, 704, 736
AluBI AGCT 3 cut(s) 20, 230, 749
AluI AGCT 3 cut(s) 20, 230, 749
Alw26I GTCTC 1 cut(s) 567
AlwI GGATC 1 cut(s) 811
AoxI GGCC 5 cut(s) 35, 369, 545, 550, 679
ApeKI GCWGC 1 cut(s) 242
AspLEI GCGC 2 cut(s) 457, 734
AspS9I GGNCC 1 cut(s) 35
AsuC2I CCSGG 1 cut(s) 452
AsuHPI GGTGA 1 cut(s) 311
BaeI ACNNNNGTAYC 2 cut(s) 645, 678
BalI TGGCCA 1 cut(s) 681
BanI GGYRCC 2 cut(s) 610, 707
BbsI GAAGAC 1 cut(s) 475
BbvI GCAGC 1 cut(s) 229
BccI CCATC 4 cut(s) 26, 299, 468, 690
BciT130I CCWGG 3 cut(s) 239, 549, 678
BcnI CCSGG 1 cut(s) 452
BcoDI GTCTC 1 cut(s) 567
BfaI CTAG 2 cut(s) 426, 458
BfmI CTRYAG 2 cut(s) 165, 702
BfoI RGCGCY 1 cut(s) 458
BisI GCNGC 1 cut(s) 243
BlsI GCNGC 1 cut(s) 244
Bme1390I CCNGG 4 cut(s) 239, 452, 549, 678
BmgT120I GGNCC 1 cut(s) 35
BmiI GGNNCC 2 cut(s) 612, 709
BmrFI CCNGG 4 cut(s) 239, 452, 549, 678
BpiI GAAGAC 1 cut(s) 475
BpmI CTGGAG 1 cut(s) 348
BpuMI CCSGG 1 cut(s) 452
BsaI GGTCTC 1 cut(s) 567
BsaJI CCNNGG 1 cut(s) 372
Bsc4I CCNNNNNNNGG 1 cut(s) 32
Bse1I ACTGG 2 cut(s) 26, 331
BseBI CCWGG 3 cut(s) 239, 549, 678
BseDI CCNNGG 1 cut(s) 372
BseGI GGATG 1 cut(s) 682
BseLI CCNNNNNNNGG 1 cut(s) 32
BseMII CTCAG 3 cut(s) 309, 408, 568
BseNI ACTGG 2 cut(s) 26, 331
BseXI GCAGC 1 cut(s) 229
BsgI GTGCAG 1 cut(s) 606
BshFI GGCC 5 cut(s) 37, 371, 547, 552, 681
BshNI GGYRCC 2 cut(s) 610, 707
BsiSI CCGG 1 cut(s) 452
BslI CCNNNNNNNGG 1 cut(s) 32
BsmAI GTCTC 1 cut(s) 567
BsnI GGCC 5 cut(s) 37, 371, 547, 552, 681
Bso31I GGTCTC 1 cut(s) 567
Bsp143I GATC 2 cut(s) 790, 803
BspACI CCGC 2 cut(s) 274, 715
BspANI GGCC 5 cut(s) 37, 371, 547, 552, 681
BspCNI CTCAG 4 cut(s) 310, 409, 567, 867
BspLI GGNNCC 2 cut(s) 612, 709
BspMAI CTGCAG 1 cut(s) 169
BspPI GGATC 1 cut(s) 811
BspT107I GGYRCC 2 cut(s) 610, 707
BspTNI GGTCTC 1 cut(s) 567
BsrBI CCGCTC 1 cut(s) 274
BsrI ACTGG 2 cut(s) 26, 331
BssECI CCNNGG 1 cut(s) 372
BssMI GATC 2 cut(s) 790, 803
BssT1I CCWWGG 1 cut(s) 372
Bst2UI CCWGG 3 cut(s) 239, 549, 678
Bst4CI ACNGT 5 cut(s) 75, 182, 402, 443, 578
Bst6I CTCTTC 2 cut(s) 3, 182
BstDEI CTNAG 7 cut(s) 204, 221, 318, 417, 554, 617, 854
BstEII GGTNACC 1 cut(s) 281
BstF5I GGATG 1 cut(s) 682
BstH2I RGCGCY 1 cut(s) 458
BstHHI GCGC 2 cut(s) 457, 734
BstKTI GATC 2 cut(s) 793, 806
BstMAI GTCTC 1 cut(s) 567
BstMBI GATC 2 cut(s) 790, 803
BstMWI GCNNNNNNNGC 1 cut(s) 173
BstNI CCWGG 3 cut(s) 239, 549, 678
BstPI GGTNACC 1 cut(s) 281
BstSCI CCNGG 4 cut(s) 237, 450, 547, 676
BstSFI CTRYAG 2 cut(s) 165, 702
BstV1I GCAGC 1 cut(s) 229
BstV2I GAAGAC 1 cut(s) 475
BsuRI GGCC 5 cut(s) 37, 371, 547, 552, 681
BtsCI GGATG 1 cut(s) 682
BtsI GCAGTG 1 cut(s) 174
BtsIMutI CAGTG 4 cut(s) 71, 174, 187, 324
CfoI GCGC 2 cut(s) 457, 734
Cfr13I GGNCC 1 cut(s) 35
Csp6I GTAC 4 cut(s) 235, 461, 492, 815
CviAII CATG 3 cut(s) 495, 503, 841
CviQI GTAC 4 cut(s) 235, 461, 492, 815
DdeI CTNAG 7 cut(s) 204, 221, 318, 417, 554, 617, 854
DpnI GATC 2 cut(s) 792, 805
DpnII GATC 2 cut(s) 790, 803
DraIII CACNNNGTG 1 cut(s) 729
EaeI YGGCCR 1 cut(s) 679
Eam1104I CTCTTC 2 cut(s) 3, 182
EarI CTCTTC 2 cut(s) 3, 182
Eco130I CCWWGG 1 cut(s) 372
Eco31I GGTCTC 1 cut(s) 567
Eco91I GGTNACC 1 cut(s) 281
EcoO65I GGTNACC 1 cut(s) 281
EcoRII CCWGG 3 cut(s) 237, 547, 676
EcoT14I CCWWGG 1 cut(s) 372
ErhI CCWWGG 1 cut(s) 372
FaeI CATG 3 cut(s) 498, 506, 844
FatI CATG 3 cut(s) 494, 502, 840
FauNDI CATATG 1 cut(s) 345
Fnu4HI GCNGC 1 cut(s) 243
FokI GGATG 1 cut(s) 669
Fsp4HI GCNGC 1 cut(s) 243
FspBI CTAG 2 cut(s) 426, 458
GlaI GCGC 2 cut(s) 456, 733
GluI GCNGC 1 cut(s) 243
GsuI CTGGAG 1 cut(s) 348
HaeII RGCGCY 1 cut(s) 458
HaeIII GGCC 5 cut(s) 37, 371, 547, 552, 681
HapII CCGG 1 cut(s) 452
HhaI GCGC 2 cut(s) 457, 734
Hin1II CATG 3 cut(s) 498, 506, 844
Hin6I GCGC 2 cut(s) 455, 732
HinP1I GCGC 2 cut(s) 455, 732
HinfI GANTC 6 cut(s) 13, 89, 161, 265, 314, 836
HpaII CCGG 1 cut(s) 452
HphI GGTGA 1 cut(s) 311
Hpy166II GTNNAC 2 cut(s) 324, 446
Hpy188I TCNGA 8 cut(s) 88, 115, 160, 264, 319, 397, 824, 857
Hpy188III TCNNGA 2 cut(s) 93, 269
Hpy8I GTNNAC 2 cut(s) 324, 446
HpyAV CCTTC 1 cut(s) 271
HpyCH4III ACNGT 5 cut(s) 75, 182, 402, 443, 578
HpyCH4IV ACGT 1 cut(s) 817
HpyCH4V TGCA 7 cut(s) 59, 167, 245, 349, 587, 773, 849
HpyF10VI GCNNNNNNNGC 1 cut(s) 173
HpyF3I CTNAG 7 cut(s) 204, 221, 318, 417, 554, 617, 854
HpySE526I ACGT 1 cut(s) 817
Hsp92II CATG 3 cut(s) 498, 506, 844
HspAI GCGC 2 cut(s) 455, 732
Kzo9I GATC 2 cut(s) 790, 803
Lsp1109I GCAGC 1 cut(s) 229
MaeI CTAG 2 cut(s) 426, 458
MaeII ACGT 1 cut(s) 817
MaeIII GTNAC 3 cut(s) 281, 311, 480
MalI GATC 2 cut(s) 792, 805
MbiI CCGCTC 1 cut(s) 274
MboI GATC 2 cut(s) 790, 803
MboII GAAGA 5 cut(s) 20, 39, 199, 480, 543
MlsI TGGCCA 1 cut(s) 681
MluCI AATT 1 cut(s) 429
MluNI TGGCCA 1 cut(s) 681
MlyI GAGTC 4 cut(s) 22, 98, 274, 308
MmeI TCCRAC 1 cut(s) 550
MnlI CCTC 5 cut(s) 333, 492, 563, 601, 624
Mox20I TGGCCA 1 cut(s) 681
MscI TGGCCA 1 cut(s) 681
Msp20I TGGCCA 1 cut(s) 681
MspI CCGG 1 cut(s) 452
MspR9I CCNGG 4 cut(s) 239, 452, 549, 678
MvaI CCWGG 3 cut(s) 239, 549, 678
MwoI GCNNNNNNNGC 1 cut(s) 173
NciI CCSGG 1 cut(s) 452
NdeI CATATG 1 cut(s) 345
NdeII GATC 2 cut(s) 790, 803
NlaIII CATG 3 cut(s) 498, 506, 844
NlaIV GGNNCC 2 cut(s) 612, 709
NmuCI GTSAC 1 cut(s) 311
PfeI GAWTC 2 cut(s) 161, 836
PflMI CCANNNNNTGG 1 cut(s) 32
PkrI GCNGC 1 cut(s) 244
PleI GAGTC 4 cut(s) 21, 97, 273, 308
PpsI GAGTC 4 cut(s) 21, 97, 273, 308
Psp6I CCWGG 3 cut(s) 237, 547, 676
PspEI GGTNACC 1 cut(s) 281
PspGI CCWGG 3 cut(s) 237, 547, 676
PspN4I GGNNCC 2 cut(s) 612, 709
PspPI GGNCC 1 cut(s) 35
PsrI GAACNNNNNNTAC 4 cut(s) 390, 422, 637, 669
PstI CTGCAG 1 cut(s) 169
RsaI GTAC 4 cut(s) 236, 462, 493, 816
RsaNI GTAC 4 cut(s) 235, 461, 492, 815
SatI GCNGC 1 cut(s) 243
Sau3AI GATC 2 cut(s) 790, 803
Sau96I GGNCC 1 cut(s) 35
SchI GAGTC 4 cut(s) 22, 98, 274, 308
ScrFI CCNGG 4 cut(s) 239, 452, 549, 678
SfcI CTRYAG 2 cut(s) 165, 702
Sse9I AATT 1 cut(s) 429
SsiI CCGC 2 cut(s) 274, 715
SspMI CTAG 2 cut(s) 426, 458
StyD4I CCNGG 4 cut(s) 237, 450, 547, 676
StyI CCWWGG 1 cut(s) 372
TaaI ACNGT 5 cut(s) 75, 182, 402, 443, 578
TaiI ACGT 1 cut(s) 820
TasI AATT 1 cut(s) 429
TatI WGTACW 2 cut(s) 460, 491
TfiI GAWTC 2 cut(s) 161, 836
TscAI CASTG 4 cut(s) 78, 174, 187, 331
TseFI GTSAC 1 cut(s) 311
TseI GCWGC 1 cut(s) 242
Tsp45I GTSAC 1 cut(s) 311
TspDTI ATGAA 3 cut(s) 39, 132, 368
TspRI CASTG 4 cut(s) 78, 174, 187, 331
Van91I CCANNNNNTGG 1 cut(s) 32
XspI CTAG 2 cut(s) 426, 458
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.