Rh2DG255100

Oxidation resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0001099
Physical Location & Seq
Reverse (-)
27136838 .. 27140581
3744 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG255100.1

Sequence Viewer

Length: 678 bp
ATGAGTGAAGAGAGTCCAGCTAATCCAGTTGACGGGCCTGACACTTCTTCATTTACTGCATTTCTCTACTCACTGTTATCGTCATCAGAGTCGGGAGATAAGAGCAAAAGTTCGGATGAACAGGTTGATGACCAAATAGATAAGAGCAACTCATTGTCTGATTCTGCAGTGAAAGCAAACAGTGGGAAGAGAAGTTTGTTTTCTAAGGGGAAACACACGCTTAGTAAAGCGTTGTACCAGGCTGCAAGATTTGGTGGGTATCGGAGTCAAGAGCGGAAGGGTAACCTTGATGTAAAAGGTGATGATGGGAATGACTCTGAGTTCGCTGGAGTTGAGATGAGGCATATGCAGAAACCACAAAAGCCTGTGGCCTTGGTTCATTTGACAGACATCTCTGAACCGTCTTTACTTCTTACTGAGAAAACTAGAATTGCTCTTTACAGTTCACTCCCGGCGCTAGTACAGGGAAGACGATGGTTGCTACTATATAGTACATGGAGGCATGGCATATCACTTTCAACCCTATACAGAAGAAGTATGCTTTGGCCTGGCCTCAGTTTGCTGGTAATAGCTCAGCAACTGTTAGCATCAGTCATTTTGAAAATATTTCAAATCAACTCTTTCAACAAAATTATTTATTGTCTATTACTGTATAAATATAATGTAATATGGATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TLD

Protein Analysis

225

Amino Acids

25.14

Weight (kDa)

9.19

Isoelectric Point (pI)

46.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TLD PF07534 132 - 191 7.3e-08 TLDc domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 274
AciI CCGC 1 cut(s) 274
AfaI GTAC 3 cut(s) 236, 462, 493
AfiI CCNNNNNNNGG 1 cut(s) 32
AgsI TTSAA 4 cut(s) 519, 601, 611, 625
AjnI CCWGG 2 cut(s) 237, 547
AjuI GAANNNNNNNTTGG 2 cut(s) 526, 558
AluBI AGCT 2 cut(s) 20, 572
AluI AGCT 2 cut(s) 20, 572
AlwNI CAGNNNCTG 1 cut(s) 580
AoxI GGCC 4 cut(s) 35, 369, 545, 550
ApeKI GCWGC 1 cut(s) 242
ArsI GACNNNNNNTTYG 2 cut(s) 305, 337
AspLEI GCGC 1 cut(s) 457
AspS9I GGNCC 1 cut(s) 35
AsuC2I CCSGG 1 cut(s) 452
AsuHPI GGTGA 1 cut(s) 311
BbsI GAAGAC 1 cut(s) 475
BbvI GCAGC 1 cut(s) 229
BccI CCATC 2 cut(s) 299, 468
BciT130I CCWGG 2 cut(s) 239, 549
BcnI CCSGG 1 cut(s) 452
BfaI CTAG 2 cut(s) 426, 458
BfmI CTRYAG 1 cut(s) 165
BfoI RGCGCY 1 cut(s) 458
BisI GCNGC 1 cut(s) 243
BlpI GCTNAGC 1 cut(s) 573
BlsI GCNGC 1 cut(s) 244
Bme1390I CCNGG 3 cut(s) 239, 452, 549
BmgT120I GGNCC 1 cut(s) 35
BmrFI CCNGG 3 cut(s) 239, 452, 549
BmsI GCATC 1 cut(s) 596
BpiI GAAGAC 1 cut(s) 475
BpmI CTGGAG 1 cut(s) 348
Bpu1102I GCTNAGC 1 cut(s) 573
BpuMI CCSGG 1 cut(s) 452
BsaJI CCNNGG 1 cut(s) 372
Bsc4I CCNNNNNNNGG 1 cut(s) 32
Bse1I ACTGG 1 cut(s) 26
BseBI CCWGG 2 cut(s) 239, 549
BseDI CCNNGG 1 cut(s) 372
BseGI GGATG 1 cut(s) 121
BseLI CCNNNNNNNGG 1 cut(s) 32
BseMII CTCAG 4 cut(s) 309, 408, 568, 587
BseNI ACTGG 1 cut(s) 26
BseXI GCAGC 1 cut(s) 229
BshFI GGCC 4 cut(s) 37, 371, 547, 552
BsiSI CCGG 1 cut(s) 452
BslI CCNNNNNNNGG 1 cut(s) 32
BsnI GGCC 4 cut(s) 37, 371, 547, 552
Bsp1720I GCTNAGC 1 cut(s) 573
BspACI CCGC 1 cut(s) 274
BspANI GGCC 4 cut(s) 37, 371, 547, 552
BspCNI CTCAG 4 cut(s) 310, 409, 567, 586
BspMAI CTGCAG 1 cut(s) 169
BsrBI CCGCTC 1 cut(s) 274
BsrI ACTGG 1 cut(s) 26
BssECI CCNNGG 1 cut(s) 372
BssT1I CCWWGG 1 cut(s) 372
Bst2UI CCWGG 2 cut(s) 239, 549
Bst4CI ACNGT 6 cut(s) 75, 182, 402, 443, 582, 651
Bst6I CTCTTC 2 cut(s) 3, 182
BstDEI CTNAG 6 cut(s) 204, 221, 318, 417, 554, 573
BstEII GGTNACC 1 cut(s) 281
BstF5I GGATG 1 cut(s) 121
BstH2I RGCGCY 1 cut(s) 458
BstHHI GCGC 1 cut(s) 457
BstMWI GCNNNNNNNGC 1 cut(s) 173
BstNI CCWGG 2 cut(s) 239, 549
BstPI GGTNACC 1 cut(s) 281
BstSCI CCNGG 3 cut(s) 237, 450, 547
BstSFI CTRYAG 1 cut(s) 165
BstV1I GCAGC 1 cut(s) 229
BstV2I GAAGAC 1 cut(s) 475
BsuRI GGCC 4 cut(s) 37, 371, 547, 552
BtsCI GGATG 1 cut(s) 121
BtsI GCAGTG 1 cut(s) 174
BtsIMutI CAGTG 3 cut(s) 71, 174, 187
CaiI CAGNNNCTG 1 cut(s) 580
CfoI GCGC 1 cut(s) 457
Cfr13I GGNCC 1 cut(s) 35
Csp6I GTAC 3 cut(s) 235, 461, 492
CviAII CATG 2 cut(s) 495, 503
CviJI RGCY 8 cut(s) 20, 37, 242, 364, 371, 547, 552, 572
CviKI_1 RGCY 8 cut(s) 20, 37, 242, 364, 371, 547, 552, 572
CviQI GTAC 3 cut(s) 235, 461, 492
DdeI CTNAG 6 cut(s) 204, 221, 318, 417, 554, 573
Eam1104I CTCTTC 2 cut(s) 3, 182
EarI CTCTTC 2 cut(s) 3, 182
Eco130I CCWWGG 1 cut(s) 372
Eco91I GGTNACC 1 cut(s) 281
EcoO65I GGTNACC 1 cut(s) 281
EcoRII CCWGG 2 cut(s) 237, 547
EcoT14I CCWWGG 1 cut(s) 372
ErhI CCWWGG 1 cut(s) 372
FaeI CATG 2 cut(s) 498, 506
FatI CATG 2 cut(s) 494, 502
FauNDI CATATG 1 cut(s) 345
Fnu4HI GCNGC 1 cut(s) 243
FokI GGATG 1 cut(s) 128
Fsp4HI GCNGC 1 cut(s) 243
FspBI CTAG 2 cut(s) 426, 458
GlaI GCGC 1 cut(s) 456
GluI GCNGC 1 cut(s) 243
GsuI CTGGAG 1 cut(s) 348
HaeII RGCGCY 1 cut(s) 458
HaeIII GGCC 4 cut(s) 37, 371, 547, 552
HapII CCGG 1 cut(s) 452
HhaI GCGC 1 cut(s) 457
Hin1II CATG 2 cut(s) 498, 506
Hin6I GCGC 1 cut(s) 455
HinP1I GCGC 1 cut(s) 455
HincII GTYRAC 1 cut(s) 31
HindII GTYRAC 1 cut(s) 31
HinfI GANTC 5 cut(s) 13, 89, 161, 265, 314
HpaII CCGG 1 cut(s) 452
HphI GGTGA 1 cut(s) 311
Hpy166II GTNNAC 2 cut(s) 31, 446
Hpy188I TCNGA 6 cut(s) 88, 115, 160, 264, 319, 397
Hpy188III TCNNGA 2 cut(s) 93, 269
Hpy8I GTNNAC 2 cut(s) 31, 446
HpyAV CCTTC 1 cut(s) 271
HpyCH4III ACNGT 6 cut(s) 75, 182, 402, 443, 582, 651
HpyCH4V TGCA 4 cut(s) 59, 167, 245, 349
HpyF10VI GCNNNNNNNGC 1 cut(s) 173
HpyF3I CTNAG 6 cut(s) 204, 221, 318, 417, 554, 573
Hsp92II CATG 2 cut(s) 498, 506
HspAI GCGC 1 cut(s) 455
Lsp1109I GCAGC 1 cut(s) 229
LweI GCATC 1 cut(s) 596
MaeI CTAG 2 cut(s) 426, 458
MaeIII GTNAC 1 cut(s) 281
MbiI CCGCTC 1 cut(s) 274
MboII GAAGA 5 cut(s) 20, 39, 199, 480, 543
MluCI AATT 2 cut(s) 429, 630
MlyI GAGTC 4 cut(s) 22, 98, 274, 308
MnlI CCTC 3 cut(s) 333, 492, 563
MspI CCGG 1 cut(s) 452
MspR9I CCNGG 3 cut(s) 239, 452, 549
MvaI CCWGG 2 cut(s) 239, 549
MwoI GCNNNNNNNGC 1 cut(s) 173
NciI CCSGG 1 cut(s) 452
NdeI CATATG 1 cut(s) 345
NlaIII CATG 2 cut(s) 498, 506
PfeI GAWTC 1 cut(s) 161
PkrI GCNGC 1 cut(s) 244
PleI GAGTC 4 cut(s) 21, 97, 273, 308
PpsI GAGTC 4 cut(s) 21, 97, 273, 308
Psp6I CCWGG 2 cut(s) 237, 547
PspEI GGTNACC 1 cut(s) 281
PspGI CCWGG 2 cut(s) 237, 547
PspPI GGNCC 1 cut(s) 35
PsrI GAACNNNNNNTAC 2 cut(s) 390, 422
PstI CTGCAG 1 cut(s) 169
PstNI CAGNNNCTG 1 cut(s) 580
RsaI GTAC 3 cut(s) 236, 462, 493
RsaNI GTAC 3 cut(s) 235, 461, 492
SatI GCNGC 1 cut(s) 243
Sau96I GGNCC 1 cut(s) 35
SchI GAGTC 4 cut(s) 22, 98, 274, 308
ScrFI CCNGG 3 cut(s) 239, 452, 549
SetI ASST 5 cut(s) 22, 126, 288, 301, 574
SfaNI GCATC 1 cut(s) 596
SfcI CTRYAG 1 cut(s) 165
Sse9I AATT 2 cut(s) 429, 630
SsiI CCGC 1 cut(s) 274
SspI AATATT 1 cut(s) 606
SspMI CTAG 2 cut(s) 426, 458
StyD4I CCNGG 3 cut(s) 237, 450, 547
StyI CCWWGG 1 cut(s) 372
TaaI ACNGT 6 cut(s) 75, 182, 402, 443, 582, 651
TasI AATT 2 cut(s) 429, 630
TatI WGTACW 2 cut(s) 460, 491
TfiI GAWTC 1 cut(s) 161
TscAI CASTG 3 cut(s) 78, 174, 187
TseI GCWGC 1 cut(s) 242
TspDTI ATGAA 3 cut(s) 39, 132, 368
TspRI CASTG 3 cut(s) 78, 174, 187
XspI CTAG 2 cut(s) 426, 458
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.