Rh2DG251100

Oxidation resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0001099
Physical Location & Seq
Reverse (-)
25923255 .. 25923992
738 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG251100.1

Sequence Viewer

Length: 330 bp
ATGATGGGAATGACTGTGGCTTTGGTTCATCTACCAGACGTCTCCGTACCTTCTTTACTTCTTACTGAGAAAAATAGAATTGCTCTTTACAGTTCACTCCCAGCGCTAGTTCAGGGAAGTCAATGGTTGTTACTATATAGTACATGGAGGCATGGCATATCACTTTCAACCCTATACAGAAGAAGTGTGCTTTGTCCTGGCCTCAGTTTGTTGGTTGTTGGAGACTGTAAAGGTGCAGTTTTTGGTGGCTTGGTGGAGGCACCTCTAAGACCAACCAACAAGAAGTATCTGGTCCTGCTGAAGCAGATACATCCTTATGACTCCATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TLD

Protein Analysis

109

Amino Acids

11.99

Weight (kDa)

9.51

Isoelectric Point (pI)

43.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TLD PF07534 16 - 96 1.3e-12 TLDc domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 42
AccB1I GGYRCC 1 cut(s) 259
AcuI CTGAAG 1 cut(s) 320
AcyI GRCGYC 1 cut(s) 39
AfaI GTAC 2 cut(s) 48, 142
AfeI AGCGCT 1 cut(s) 105
AgsI TTSAA 1 cut(s) 168
AjnI CCWGG 1 cut(s) 196
Alw26I GTCTC 2 cut(s) 46, 216
Aor51HI AGCGCT 1 cut(s) 105
AoxI GGCC 1 cut(s) 199
ArsI GACNNNNNNTTYG 1 cut(s) 36
AspLEI GCGC 1 cut(s) 106
AspS9I GGNCC 1 cut(s) 292
AvaII GGWCC 1 cut(s) 292
BanI GGYRCC 1 cut(s) 259
BciT130I CCWGG 1 cut(s) 198
BcoDI GTCTC 2 cut(s) 46, 216
BfaI CTAG 2 cut(s) 107, 328
BfoI RGCGCY 1 cut(s) 107
Bme1390I CCNGG 1 cut(s) 198
Bme18I GGWCC 1 cut(s) 292
BmgT120I GGNCC 1 cut(s) 292
BmiI GGNNCC 1 cut(s) 261
BmrFI CCNGG 1 cut(s) 198
BsaHI GRCGYC 1 cut(s) 39
BseBI CCWGG 1 cut(s) 198
BseGI GGATG 1 cut(s) 310
BseMII CTCAG 2 cut(s) 57, 217
BseYI CCCAGC 1 cut(s) 100
BsgI GTGCAG 1 cut(s) 255
BshFI GGCC 1 cut(s) 201
BshNI GGYRCC 1 cut(s) 259
BsmAI GTCTC 2 cut(s) 46, 216
BsmBI CGTCTC 1 cut(s) 46
BsnI GGCC 1 cut(s) 201
BspANI GGCC 1 cut(s) 201
BspCNI CTCAG 2 cut(s) 58, 216
BspLI GGNNCC 1 cut(s) 261
BspT107I GGYRCC 1 cut(s) 259
BssNI GRCGYC 1 cut(s) 39
Bst2UI CCWGG 1 cut(s) 198
Bst4CI ACNGT 3 cut(s) 16, 92, 227
BstACI GRCGYC 1 cut(s) 39
BstDEI CTNAG 3 cut(s) 66, 203, 266
BstF5I GGATG 1 cut(s) 310
BstH2I RGCGCY 1 cut(s) 107
BstHHI GCGC 1 cut(s) 106
BstMAI GTCTC 2 cut(s) 46, 216
BstNI CCWGG 1 cut(s) 198
BstSCI CCNGG 1 cut(s) 196
BsuRI GGCC 1 cut(s) 201
BtsCI GGATG 1 cut(s) 310
CfoI GCGC 1 cut(s) 106
Cfr13I GGNCC 1 cut(s) 292
Csp6I GTAC 2 cut(s) 47, 141
CviAII CATG 2 cut(s) 144, 152
CviJI RGCY 3 cut(s) 20, 201, 249
CviKI_1 RGCY 3 cut(s) 20, 201, 249
CviQI GTAC 2 cut(s) 47, 141
DdeI CTNAG 3 cut(s) 66, 203, 266
Eco47I GGWCC 1 cut(s) 292
Eco47III AGCGCT 1 cut(s) 105
Eco57I CTGAAG 1 cut(s) 320
EcoRII CCWGG 1 cut(s) 196
Esp3I CGTCTC 1 cut(s) 46
FaeI CATG 2 cut(s) 147, 155
FaiI YATR 7 cut(s) 136, 138, 145, 153, 158, 175, 318
FatI CATG 2 cut(s) 143, 151
FokI GGATG 1 cut(s) 297
FspBI CTAG 2 cut(s) 107, 328
GlaI GCGC 1 cut(s) 105
GsaI CCCAGC 1 cut(s) 104
HaeII RGCGCY 1 cut(s) 107
HaeIII GGCC 1 cut(s) 201
HhaI GCGC 1 cut(s) 106
Hin1I GRCGYC 1 cut(s) 39
Hin1II CATG 2 cut(s) 147, 155
Hin6I GCGC 1 cut(s) 104
HinP1I GCGC 1 cut(s) 104
HinfI GANTC 1 cut(s) 320
Hpy166II GTNNAC 1 cut(s) 95
Hpy8I GTNNAC 1 cut(s) 95
HpyAV CCTTC 1 cut(s) 60
HpyCH4III ACNGT 3 cut(s) 16, 92, 227
HpyCH4IV ACGT 1 cut(s) 39
HpyCH4V TGCA 1 cut(s) 236
HpyF3I CTNAG 3 cut(s) 66, 203, 266
HpySE526I ACGT 1 cut(s) 39
Hsp92I GRCGYC 1 cut(s) 39
Hsp92II CATG 2 cut(s) 147, 155
HspAI GCGC 1 cut(s) 104
LpnPI CCDG 7 cut(s) 48, 98, 114, 183, 210, 275, 308
MaeI CTAG 2 cut(s) 107, 328
MaeII ACGT 1 cut(s) 39
MaeIII GTNAC 1 cut(s) 129
MboII GAAGA 1 cut(s) 192
MluCI AATT 1 cut(s) 78
MlyI GAGTC 1 cut(s) 314
MmeI TCCRAC 1 cut(s) 199
MnlI CCTC 4 cut(s) 141, 212, 250, 273
MslI CAYNNNNRTG 1 cut(s) 315
MspR9I CCNGG 1 cut(s) 198
MvaI CCWGG 1 cut(s) 198
NlaIII CATG 2 cut(s) 147, 155
NlaIV GGNNCC 1 cut(s) 261
PleI GAGTC 1 cut(s) 314
PpsI GAGTC 1 cut(s) 314
Psp6I CCWGG 1 cut(s) 196
PspFI CCCAGC 1 cut(s) 100
PspGI CCWGG 1 cut(s) 196
PspN4I GGNNCC 1 cut(s) 261
PspPI GGNCC 1 cut(s) 292
RsaI GTAC 2 cut(s) 48, 142
RsaNI GTAC 2 cut(s) 47, 141
RseI CAYNNNNRTG 1 cut(s) 315
Sau96I GGNCC 1 cut(s) 292
SchI GAGTC 1 cut(s) 314
ScrFI CCNGG 1 cut(s) 198
SetI ASST 4 cut(s) 42, 52, 235, 265
SinI GGWCC 1 cut(s) 292
SmiMI CAYNNNNRTG 1 cut(s) 315
Sse9I AATT 1 cut(s) 78
SspMI CTAG 2 cut(s) 107, 328
StyD4I CCNGG 1 cut(s) 196
TaaI ACNGT 3 cut(s) 16, 92, 227
TaiI ACGT 1 cut(s) 42
TasI AATT 1 cut(s) 78
TatI WGTACW 1 cut(s) 140
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 34
VpaK11BI GGWCC 1 cut(s) 292
XspI CTAG 2 cut(s) 107, 328
ZraI GACGTC 1 cut(s) 40
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.