RLG00000018098

Oxidation resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0001099
Physical Location & Seq
Reverse (-)
25309653 .. 25312951
3299 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000018098

Sequence Viewer

Length: 1122 bp
ATGGGTAGGCCAAGGAGTCTTCGCAGCAAAGCGGCCCACTTTGTGACTGATATCACTACTGGATTGCTCAACCCCATTTCTGACAAACCCTCCAGACCCGCTCCTTCTCCTCCTCCTCAGGAAGATGTGGACGGGTCCAGAGGAAGTCAAAATGGAACAATGAGTGAAGAGAGTCCAGCTAATCCAGTTGATGGGCCTGACACTTCTTCATTTACTGCATTTCTCTACTCACTGTTATCGTCATCAGAGTCGGGAGATAAGAGCAAAAGTTCGGATGAACAGGTTGATGACCAAATGGATAAGAGCAACTCATTGTCTGATTCTGCAGTGAAAGCAAACAGTGGGAAGAGAAGCTTGTTTTCCAAGGGGAAACACACGCTTAGTAAAGCTATGTACCAGGCTGCAAGATTTGGTGGGTATCAGAGTCAAGAGCGGAAGGGTAACCTTGATGTGAAAGGTGATGATGGGAATGACTCTGAGTTTACTGGAGTTGAGATGAGGCATATGCATAAAGCACAGAAGCCTGTGGCTTTGGTTCATCTACCAGACGTCTCCGAACCTTCTTTACTTCTTACTGAGAAAAATAGAATTGCTCTTTACAGTTCACTCCCAGCGCTAGTTCAGGGCAGACAATGGTTGTTACTATATAGTACATGGAGGCATGGCATATCACTTTCAACCCTATACAGAAGAAGTATGCTTTGGCCTGGCCTCAGTTTGCTGGTTGTTGGAGACCGTAAAGGTGCAGTTTTTGGTGGCTTGTTGGAGGCACCTCTAAGACCAACCAACAAGAAGTATCAGGGAACAAATGATACATTTGTTTTCACAAATACACCCGACCATCCTGTTATATATCGCCCTACAGGTGCCAACCGCTATTTCACATTGTGCGCTACTGACTTTTTAGCTATTGGTGGGGGTGGTCATTTTGCACTCTATTTGAACAGTGATCTATTGAGTGGATCAAGTTCAGTTTCAGAAACCTATGGGAATCCATGTCTTGCAAACTCAGAAGACTTTGATGTGAAAGAAGTAGAGTTATGGGGTTTTGTTTATGCTACTAAGTATGAGGAAGTACTTGCTCAAAGCCGTATGGAGGCACCTGGGATTTGCCGATGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TLD

Protein Analysis

374

Amino Acids

40.79

Weight (kDa)

6.46

Isoelectric Point (pI)

46.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TLD PF07534 185 - 350 3.3e-41 TLDc domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 552
AccB1I GGYRCC 3 cut(s) 769, 866, 1099
AccB7I CCANNNNNTGG 1 cut(s) 191
AccBSI CCGCTC 2 cut(s) 101, 433
AciI CCGC 4 cut(s) 32, 99, 433, 874
AclWI GGATC 1 cut(s) 970
AcyI GRCGYC 1 cut(s) 549
AdeI CACNNNGTG 2 cut(s) 43, 888
AfaI GTAC 3 cut(s) 395, 652, 1077
AfeI AGCGCT 1 cut(s) 615
AfiI CCNNNNNNNGG 2 cut(s) 191, 1096
AgsI TTSAA 2 cut(s) 678, 943
AjnI CCWGG 3 cut(s) 396, 706, 1102
AjuI GAANNNNNNNTTGG 4 cut(s) 685, 717, 863, 895
AluBI AGCT 4 cut(s) 179, 354, 389, 908
AluI AGCT 4 cut(s) 179, 354, 389, 908
Alw26I GTCTC 2 cut(s) 556, 726
AlwI GGATC 1 cut(s) 970
Aor51HI AGCGCT 1 cut(s) 615
AoxI GGCC 5 cut(s) 8, 33, 194, 704, 709
ApeKI GCWGC 2 cut(s) 24, 401
AspLEI GCGC 2 cut(s) 616, 893
AspS9I GGNCC 3 cut(s) 34, 135, 194
AsuHPI GGTGA 1 cut(s) 470
AvaII GGWCC 1 cut(s) 135
AxyI CCTNAGG 1 cut(s) 117
BaeI ACNNNNGTAYC 2 cut(s) 804, 837
BanI GGYRCC 3 cut(s) 769, 866, 1099
BbsI GAAGAC 2 cut(s) 11, 1020
BbvI GCAGC 2 cut(s) 36, 388
BccI CCATC 4 cut(s) 185, 458, 849, 1110
BceAI ACGGC 1 cut(s) 1074
BciT130I CCWGG 3 cut(s) 398, 708, 1104
BcoDI GTCTC 2 cut(s) 556, 726
BfaI CTAG 1 cut(s) 617
BfmI CTRYAG 2 cut(s) 324, 861
BfoI RGCGCY 1 cut(s) 617
BisI GCNGC 3 cut(s) 25, 33, 402
BlsI GCNGC 3 cut(s) 26, 34, 403
BmcAI AGTACT 1 cut(s) 1077
Bme1390I CCNGG 3 cut(s) 398, 708, 1104
Bme18I GGWCC 1 cut(s) 135
BmgT120I GGNCC 3 cut(s) 34, 135, 194
BmiI GGNNCC 4 cut(s) 136, 771, 868, 1101
BmrFI CCNGG 3 cut(s) 398, 708, 1104
BpiI GAAGAC 2 cut(s) 11, 1020
BpmI CTGGAG 2 cut(s) 76, 507
BsaHI GRCGYC 1 cut(s) 549
BsaI GGTCTC 1 cut(s) 726
BsaJI CCNNGG 3 cut(s) 11, 363, 1103
BsaXI ACNNNNNCTCC 2 cut(s) 74, 104
Bsc4I CCNNNNNNNGG 2 cut(s) 191, 1096
Bse1I ACTGG 3 cut(s) 64, 185, 490
Bse21I CCTNAGG 1 cut(s) 117
BseBI CCWGG 3 cut(s) 398, 708, 1104
BseDI CCNNGG 3 cut(s) 11, 363, 1103
BseGI GGATG 2 cut(s) 280, 841
BseLI CCNNNNNNNGG 2 cut(s) 191, 1096
BseMII CTCAG 5 cut(s) 131, 468, 567, 727, 1023
BseNI ACTGG 3 cut(s) 64, 185, 490
BseRI GAGGAG 3 cut(s) 99, 102, 105
BseXI GCAGC 2 cut(s) 36, 388
BseYI CCCAGC 1 cut(s) 610
BsgI GTGCAG 1 cut(s) 765
BshFI GGCC 5 cut(s) 10, 35, 196, 706, 711
BshNI GGYRCC 3 cut(s) 769, 866, 1099
BslI CCNNNNNNNGG 2 cut(s) 191, 1096
BsmAI GTCTC 2 cut(s) 556, 726
BsmBI CGTCTC 1 cut(s) 556
BsnI GGCC 5 cut(s) 10, 35, 196, 706, 711
Bso31I GGTCTC 1 cut(s) 726
Bsp143I GATC 2 cut(s) 949, 962
BspACI CCGC 4 cut(s) 32, 99, 433, 874
BspANI GGCC 5 cut(s) 10, 35, 196, 706, 711
BspCNI CTCAG 5 cut(s) 130, 469, 568, 726, 1022
BspLI GGNNCC 4 cut(s) 136, 771, 868, 1101
BspMAI CTGCAG 1 cut(s) 328
BspPI GGATC 1 cut(s) 970
BspT107I GGYRCC 3 cut(s) 769, 866, 1099
BspTNI GGTCTC 1 cut(s) 726
BsrBI CCGCTC 2 cut(s) 101, 433
BsrI ACTGG 3 cut(s) 64, 185, 490
BssECI CCNNGG 3 cut(s) 11, 363, 1103
BssMI GATC 2 cut(s) 949, 962
BssNI GRCGYC 1 cut(s) 549
BssT1I CCWWGG 2 cut(s) 11, 363
Bst2UI CCWGG 3 cut(s) 398, 708, 1104
Bst4CI ACNGT 5 cut(s) 234, 341, 602, 737, 947
Bst6I CTCTTC 2 cut(s) 162, 341
BstACI GRCGYC 1 cut(s) 549
BstDEI CTNAG 8 cut(s) 117, 380, 477, 576, 713, 776, 1009, 1062
BstEII GGTNACC 1 cut(s) 440
BstF5I GGATG 2 cut(s) 280, 841
BstH2I RGCGCY 1 cut(s) 617
BstHHI GCGC 2 cut(s) 616, 893
BstKTI GATC 2 cut(s) 952, 965
BstMAI GTCTC 2 cut(s) 556, 726
BstMBI GATC 2 cut(s) 949, 962
BstMWI GCNNNNNNNGC 1 cut(s) 332
BstNI CCWGG 3 cut(s) 398, 708, 1104
BstPI GGTNACC 1 cut(s) 440
BstSCI CCNGG 3 cut(s) 396, 706, 1102
BstSFI CTRYAG 2 cut(s) 324, 861
BstV1I GCAGC 2 cut(s) 36, 388
BstV2I GAAGAC 2 cut(s) 11, 1020
Bsu36I CCTNAGG 1 cut(s) 117
BsuRI GGCC 5 cut(s) 10, 35, 196, 706, 711
BtsCI GGATG 2 cut(s) 280, 841
BtsI GCAGTG 1 cut(s) 333
BtsIMutI CAGTG 4 cut(s) 230, 333, 346, 952
CfoI GCGC 2 cut(s) 616, 893
Cfr13I GGNCC 3 cut(s) 34, 135, 194
Csp6I GTAC 3 cut(s) 394, 651, 1076
CviAII CATG 3 cut(s) 654, 662, 996
CviQI GTAC 3 cut(s) 394, 651, 1076
DdeI CTNAG 8 cut(s) 117, 380, 477, 576, 713, 776, 1009, 1062
DpnI GATC 2 cut(s) 951, 964
DpnII GATC 2 cut(s) 949, 962
DraIII CACNNNGTG 2 cut(s) 43, 888
Eam1104I CTCTTC 2 cut(s) 162, 341
EarI CTCTTC 2 cut(s) 162, 341
Eco130I CCWWGG 2 cut(s) 11, 363
Eco31I GGTCTC 1 cut(s) 726
Eco32I GATATC 1 cut(s) 52
Eco47I GGWCC 1 cut(s) 135
Eco47III AGCGCT 1 cut(s) 615
Eco81I CCTNAGG 1 cut(s) 117
Eco91I GGTNACC 1 cut(s) 440
EcoO65I GGTNACC 1 cut(s) 440
EcoRII CCWGG 3 cut(s) 396, 706, 1102
EcoRV GATATC 1 cut(s) 52
EcoT14I CCWWGG 2 cut(s) 11, 363
EcoT22I ATGCAT 1 cut(s) 510
ErhI CCWWGG 2 cut(s) 11, 363
Esp3I CGTCTC 1 cut(s) 556
FaeI CATG 3 cut(s) 657, 665, 999
FalI AAGNNNNNCTT 2 cut(s) 338, 370
FatI CATG 3 cut(s) 653, 661, 995
FauI CCCGC 1 cut(s) 106
FauNDI CATATG 1 cut(s) 504
Fnu4HI GCNGC 3 cut(s) 25, 33, 402
FokI GGATG 2 cut(s) 287, 828
Fsp4HI GCNGC 3 cut(s) 25, 33, 402
FspBI CTAG 1 cut(s) 617
GlaI GCGC 2 cut(s) 615, 892
GluI GCNGC 3 cut(s) 25, 33, 402
GsaI CCCAGC 1 cut(s) 614
GsuI CTGGAG 2 cut(s) 76, 507
HaeII RGCGCY 1 cut(s) 617
HaeIII GGCC 5 cut(s) 10, 35, 196, 706, 711
HhaI GCGC 2 cut(s) 616, 893
Hin1I GRCGYC 1 cut(s) 549
Hin1II CATG 3 cut(s) 657, 665, 999
Hin6I GCGC 2 cut(s) 614, 891
HinP1I GCGC 2 cut(s) 614, 891
HindIII AAGCTT 1 cut(s) 352
HinfI GANTC 7 cut(s) 16, 172, 248, 320, 424, 473, 991
HphI GGTGA 1 cut(s) 470
Hpy166II GTNNAC 3 cut(s) 130, 483, 605
Hpy188I TCNGA 9 cut(s) 82, 247, 274, 319, 423, 478, 556, 979, 1012
Hpy188III TCNNGA 5 cut(s) 93, 119, 138, 252, 428
Hpy8I GTNNAC 3 cut(s) 130, 483, 605
HpyAV CCTTC 3 cut(s) 114, 430, 570
HpyCH4III ACNGT 5 cut(s) 234, 341, 602, 737, 947
HpyCH4IV ACGT 1 cut(s) 549
HpyCH4V TGCA 7 cut(s) 218, 326, 404, 508, 746, 932, 1004
HpyF10VI GCNNNNNNNGC 1 cut(s) 332
HpyF3I CTNAG 8 cut(s) 117, 380, 477, 576, 713, 776, 1009, 1062
HpySE526I ACGT 1 cut(s) 549
Hsp92I GRCGYC 1 cut(s) 549
Hsp92II CATG 3 cut(s) 657, 665, 999
HspAI GCGC 2 cut(s) 614, 891
Kzo9I GATC 2 cut(s) 949, 962
LmnI GCTCC 1 cut(s) 106
Lsp1109I GCAGC 2 cut(s) 36, 388
MaeI CTAG 1 cut(s) 617
MaeII ACGT 1 cut(s) 549
MaeIII GTNAC 3 cut(s) 43, 440, 639
MalI GATC 2 cut(s) 951, 964
MbiI CCGCTC 2 cut(s) 101, 433
MboI GATC 2 cut(s) 949, 962
MboII GAAGA 7 cut(s) 11, 134, 179, 198, 358, 702, 1025
MluCI AATT 1 cut(s) 588
MlyI GAGTC 5 cut(s) 25, 181, 257, 433, 467
MmeI TCCRAC 2 cut(s) 709, 744
Mph1103I ATGCAT 1 cut(s) 510
MspR9I CCNGG 3 cut(s) 398, 708, 1104
MvaI CCWGG 3 cut(s) 398, 708, 1104
MwoI GCNNNNNNNGC 1 cut(s) 332
NdeI CATATG 1 cut(s) 504
NdeII GATC 2 cut(s) 949, 962
NlaIII CATG 3 cut(s) 657, 665, 999
NlaIV GGNNCC 4 cut(s) 136, 771, 868, 1101
NmuCI GTSAC 1 cut(s) 43
NsiI ATGCAT 1 cut(s) 510
PfeI GAWTC 2 cut(s) 320, 991
PflMI CCANNNNNTGG 1 cut(s) 191
PkrI GCNGC 3 cut(s) 26, 34, 403
PleI GAGTC 5 cut(s) 24, 180, 256, 432, 467
PpsI GAGTC 5 cut(s) 24, 180, 256, 432, 467
Psp6I CCWGG 3 cut(s) 396, 706, 1102
PspEI GGTNACC 1 cut(s) 440
PspFI CCCAGC 1 cut(s) 610
PspGI CCWGG 3 cut(s) 396, 706, 1102
PspN4I GGNNCC 4 cut(s) 136, 771, 868, 1101
PspPI GGNCC 3 cut(s) 34, 135, 194
PsrI GAACNNNNNNTAC 4 cut(s) 549, 581, 796, 828
PstI CTGCAG 1 cut(s) 328
RsaI GTAC 3 cut(s) 395, 652, 1077
RsaNI GTAC 3 cut(s) 394, 651, 1076
SatI GCNGC 3 cut(s) 25, 33, 402
Sau3AI GATC 2 cut(s) 949, 962
Sau96I GGNCC 3 cut(s) 34, 135, 194
ScaI AGTACT 1 cut(s) 1077
SchI GAGTC 5 cut(s) 25, 181, 257, 433, 467
ScrFI CCNGG 3 cut(s) 398, 708, 1104
SfcI CTRYAG 2 cut(s) 324, 861
SinI GGWCC 1 cut(s) 135
Sse9I AATT 1 cut(s) 588
SsiI CCGC 4 cut(s) 32, 99, 433, 874
SspMI CTAG 1 cut(s) 617
StyD4I CCNGG 3 cut(s) 396, 706, 1102
StyI CCWWGG 2 cut(s) 11, 363
TaaI ACNGT 5 cut(s) 234, 341, 602, 737, 947
TaiI ACGT 1 cut(s) 552
TasI AATT 1 cut(s) 588
TatI WGTACW 2 cut(s) 650, 1075
TauI GCSGC 1 cut(s) 35
TfiI GAWTC 2 cut(s) 320, 991
TscAI CASTG 4 cut(s) 237, 333, 346, 952
TseFI GTSAC 1 cut(s) 43
TseI GCWGC 2 cut(s) 24, 401
Tsp45I GTSAC 1 cut(s) 43
TspDTI ATGAA 3 cut(s) 198, 291, 527
TspRI CASTG 4 cut(s) 237, 333, 346, 952
Van91I CCANNNNNTGG 1 cut(s) 191
VpaK11BI GGWCC 1 cut(s) 135
XspI CTAG 1 cut(s) 617
ZraI GACGTC 1 cut(s) 550
ZrmI AGTACT 1 cut(s) 1077
Zsp2I ATGCAT 1 cut(s) 510
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.