Rh1BG230200

Oxidation resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0001099
Physical Location & Seq
Forward (+)
35154987 .. 35155741
755 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG230200.1

Sequence Viewer

Length: 360 bp
ATGTACCAGGCTGCAAGATTTGGTGGGTATCGGAGTCAAGAGCGGAAGGGTAACCTTGATGTAAAAGGTGATGATGGGAATGACTCTGAGTTCGCTGGAGTTGAGATGAGGCATATGCAGAAACCACAAAAGCCTGTGGCCTTGGTTCATTTGACAGACATCTCTGAACCGTCTTTACTTCTTACTGAGAAAACTAGAATTGCTCTTTACAGTTCACTCCCGGCGCTAGTACAGGGAAGACAATGGTTGTTACTATATAGTACATGGAGGCATGGCATATCACTTTCAACCCTATACAGAAGAAGTATGCTTTGGCCTGGCCTCAGTTTGCTGGTAATTGCTGGTTGTTGGAGACCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TLD

Protein Analysis

119

Amino Acids

13.53

Weight (kDa)

9.66

Isoelectric Point (pI)

45.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TLD PF07534 55 - 113 2.7e-08 TLDc domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 43
AciI CCGC 1 cut(s) 43
AfaI GTAC 3 cut(s) 5, 231, 262
AgsI TTSAA 1 cut(s) 288
AjnI CCWGG 2 cut(s) 6, 316
AjuI GAANNNNNNNTTGG 2 cut(s) 295, 327
Alw26I GTCTC 1 cut(s) 346
AoxI GGCC 3 cut(s) 138, 314, 319
ApeKI GCWGC 1 cut(s) 11
ArsI GACNNNNNNTTYG 2 cut(s) 74, 106
AspLEI GCGC 1 cut(s) 226
AsuC2I CCSGG 1 cut(s) 221
AsuHPI GGTGA 1 cut(s) 80
BbsI GAAGAC 1 cut(s) 244
BccI CCATC 1 cut(s) 68
BciT130I CCWGG 2 cut(s) 8, 318
BcnI CCSGG 1 cut(s) 221
BcoDI GTCTC 1 cut(s) 346
BfaI CTAG 2 cut(s) 195, 227
BfoI RGCGCY 1 cut(s) 227
BisI GCNGC 1 cut(s) 12
BlsI GCNGC 1 cut(s) 13
Bme1390I CCNGG 3 cut(s) 8, 221, 318
BmrFI CCNGG 3 cut(s) 8, 221, 318
BpiI GAAGAC 1 cut(s) 244
BpmI CTGGAG 1 cut(s) 117
BpuMI CCSGG 1 cut(s) 221
BsaI GGTCTC 1 cut(s) 346
BsaJI CCNNGG 1 cut(s) 141
BseBI CCWGG 2 cut(s) 8, 318
BseDI CCNNGG 1 cut(s) 141
BseMII CTCAG 3 cut(s) 78, 177, 337
BshFI GGCC 3 cut(s) 140, 316, 321
BsiSI CCGG 1 cut(s) 221
BsmAI GTCTC 1 cut(s) 346
BsnI GGCC 3 cut(s) 140, 316, 321
Bso31I GGTCTC 1 cut(s) 346
BspACI CCGC 1 cut(s) 43
BspANI GGCC 3 cut(s) 140, 316, 321
BspCNI CTCAG 3 cut(s) 79, 178, 336
BspTNI GGTCTC 1 cut(s) 346
BsrBI CCGCTC 1 cut(s) 43
BssECI CCNNGG 1 cut(s) 141
BssT1I CCWWGG 1 cut(s) 141
Bst2UI CCWGG 2 cut(s) 8, 318
Bst4CI ACNGT 3 cut(s) 171, 212, 357
BstDEI CTNAG 3 cut(s) 87, 186, 323
BstEII GGTNACC 1 cut(s) 50
BstH2I RGCGCY 1 cut(s) 227
BstHHI GCGC 1 cut(s) 226
BstMAI GTCTC 1 cut(s) 346
BstNI CCWGG 2 cut(s) 8, 318
BstPI GGTNACC 1 cut(s) 50
BstSCI CCNGG 3 cut(s) 6, 219, 316
BstV2I GAAGAC 1 cut(s) 244
BsuRI GGCC 3 cut(s) 140, 316, 321
CfoI GCGC 1 cut(s) 226
Csp6I GTAC 3 cut(s) 4, 230, 261
CviAII CATG 2 cut(s) 264, 272
CviJI RGCY 5 cut(s) 11, 133, 140, 316, 321
CviKI_1 RGCY 5 cut(s) 11, 133, 140, 316, 321
CviQI GTAC 3 cut(s) 4, 230, 261
DdeI CTNAG 3 cut(s) 87, 186, 323
Eco130I CCWWGG 1 cut(s) 141
Eco31I GGTCTC 1 cut(s) 346
Eco91I GGTNACC 1 cut(s) 50
EcoO65I GGTNACC 1 cut(s) 50
EcoRII CCWGG 2 cut(s) 6, 316
EcoT14I CCWWGG 1 cut(s) 141
ErhI CCWWGG 1 cut(s) 141
FaeI CATG 2 cut(s) 267, 275
FaiI YATR 9 cut(s) 114, 116, 256, 258, 265, 273, 278, 295, 308
FatI CATG 2 cut(s) 263, 271
FauNDI CATATG 1 cut(s) 114
Fnu4HI GCNGC 1 cut(s) 12
Fsp4HI GCNGC 1 cut(s) 12
FspBI CTAG 2 cut(s) 195, 227
GlaI GCGC 1 cut(s) 225
GluI GCNGC 1 cut(s) 12
GsuI CTGGAG 1 cut(s) 117
HaeII RGCGCY 1 cut(s) 227
HaeIII GGCC 3 cut(s) 140, 316, 321
HapII CCGG 1 cut(s) 221
HhaI GCGC 1 cut(s) 226
Hin1II CATG 2 cut(s) 267, 275
Hin6I GCGC 1 cut(s) 224
HinP1I GCGC 1 cut(s) 224
HinfI GANTC 2 cut(s) 34, 83
HpaII CCGG 1 cut(s) 221
HphI GGTGA 1 cut(s) 80
Hpy166II GTNNAC 1 cut(s) 215
Hpy188I TCNGA 3 cut(s) 33, 88, 166
Hpy188III TCNNGA 1 cut(s) 38
Hpy8I GTNNAC 1 cut(s) 215
HpyAV CCTTC 1 cut(s) 40
HpyCH4III ACNGT 3 cut(s) 171, 212, 357
HpyCH4V TGCA 2 cut(s) 14, 118
HpyF3I CTNAG 3 cut(s) 87, 186, 323
Hsp92II CATG 2 cut(s) 267, 275
HspAI GCGC 1 cut(s) 224
LpnPI CCDG 9 cut(s) 20, 81, 147, 218, 234, 303, 317, 327, 330
MaeI CTAG 2 cut(s) 195, 227
MaeIII GTNAC 2 cut(s) 50, 249
MbiI CCGCTC 1 cut(s) 43
MboII GAAGA 2 cut(s) 249, 312
MluCI AATT 2 cut(s) 198, 336
MlyI GAGTC 2 cut(s) 43, 77
MmeI TCCRAC 1 cut(s) 329
MnlI CCTC 3 cut(s) 102, 261, 332
MspI CCGG 1 cut(s) 221
MspR9I CCNGG 3 cut(s) 8, 221, 318
MvaI CCWGG 2 cut(s) 8, 318
NciI CCSGG 1 cut(s) 221
NdeI CATATG 1 cut(s) 114
NlaIII CATG 2 cut(s) 267, 275
PkrI GCNGC 1 cut(s) 13
PleI GAGTC 2 cut(s) 42, 77
PpsI GAGTC 2 cut(s) 42, 77
Psp6I CCWGG 2 cut(s) 6, 316
PspEI GGTNACC 1 cut(s) 50
PspGI CCWGG 2 cut(s) 6, 316
PsrI GAACNNNNNNTAC 2 cut(s) 159, 191
RsaI GTAC 3 cut(s) 5, 231, 262
RsaNI GTAC 3 cut(s) 4, 230, 261
SatI GCNGC 1 cut(s) 12
SchI GAGTC 2 cut(s) 43, 77
ScrFI CCNGG 3 cut(s) 8, 221, 318
SetI ASST 2 cut(s) 57, 70
Sse9I AATT 2 cut(s) 198, 336
SsiI CCGC 1 cut(s) 43
SspMI CTAG 2 cut(s) 195, 227
StyD4I CCNGG 3 cut(s) 6, 219, 316
StyI CCWWGG 1 cut(s) 141
TaaI ACNGT 3 cut(s) 171, 212, 357
TasI AATT 2 cut(s) 198, 336
TatI WGTACW 2 cut(s) 229, 260
TseI GCWGC 1 cut(s) 11
TspDTI ATGAA 1 cut(s) 137
XspI CTAG 2 cut(s) 195, 227
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.