Rw2G019140

Oxidation resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0001099
Physical Location & Seq
Reverse (-)
25115079 .. 25116353
1275 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G019140.1

Sequence Viewer

Length: 777 bp
ATGAGTGAAGAGAGTCCAGCTAATCCAGTTGATGGGCCTGACACTTCTTCATTTACTGCATTTATCTACTCACTGTTATCGTCATCAGAGTCGGGAGCTAAGAGCAAAAATTCGGATGAACAGGTTGATGACCAAATGGATAAGAGCAACTCATTGTCTGATTCTGCAGTGAAAGCAAACAGTGGGAAGATAAGCTTGTTTTCCAAGGGGAAACACACGCCTAGTAAAGCTATGTACCAGGCTGCAAGATTGGGTGGGTATCGGAGTCAAGAGCGGAAGGGTAGCCTTGATGTGAAAGGTGATGCTGGGAATGACTCTGAGTTTACTGGAGTTGAGATGAGGCATATGCATAAGGCACAGAAGCCTGTGGCTTTGGTTCATCTACCAGACGTCTCCGAACCTTCTTTACTTCTTACTGAGAAAAATAGAATTGCTCTTTACAGTTCACTCCCAGCGCTAGTTCAGGGAAGACAATGGTTGTTACTATATAGTACATGGCGGCATGGCATATCACTTTCAACCCTATACAGGAGAAGTATGCTTTGGCCTAGCCTCAGTTTGCTGGTTGTTGGAGACCGTAAAGGTGCAGTTTTTGGTGGCTTGGTGGAGGCACCTCTAAGACCAACGAACAAGAAGTATCAGGGAACAAATGATACATTTGTTTTCACAAATACACCTGACCATCCTGTTATATATCGCCCTACAGGTACAAATTTATCCTCTTTGCTTCCTAGGGATACACAGTTTGTGATTTATCATCAATTTTTCACTGCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TLD

Protein Analysis

258

Amino Acids

28.42

Weight (kDa)

9.13

Isoelectric Point (pI)

37.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TLD PF07534 132 - 238 2.8e-21 TLDc domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 393
AccB1I GGYRCC 1 cut(s) 610
AccB7I CCANNNNNTGG 1 cut(s) 32
AccBSI CCGCTC 1 cut(s) 274
AciI CCGC 2 cut(s) 274, 499
AcsI RAATTY 2 cut(s) 109, 712
AcyI GRCGYC 1 cut(s) 390
AfaI GTAC 3 cut(s) 236, 493, 709
AfeI AGCGCT 1 cut(s) 456
AfiI CCNNNNNNNGG 2 cut(s) 32, 528
AgsI TTSAA 1 cut(s) 519
AjnI CCWGG 1 cut(s) 237
AjuI GAANNNNNNNTTGG 2 cut(s) 526, 558
AluBI AGCT 4 cut(s) 20, 98, 195, 230
AluI AGCT 4 cut(s) 20, 98, 195, 230
Alw26I GTCTC 2 cut(s) 397, 567
Aor51HI AGCGCT 1 cut(s) 456
AoxI GGCC 2 cut(s) 35, 545
ApeKI GCWGC 1 cut(s) 242
ApoI RAATTY 2 cut(s) 109, 712
AspA2I CCTAGG 1 cut(s) 731
AspLEI GCGC 1 cut(s) 457
AspS9I GGNCC 1 cut(s) 35
AsuHPI GGTGA 1 cut(s) 311
AvrII CCTAGG 1 cut(s) 731
BaeI ACNNNNGTAYC 2 cut(s) 645, 678
BanI GGYRCC 1 cut(s) 610
BbsI GAAGAC 1 cut(s) 475
BbvI GCAGC 1 cut(s) 229
BccI CCATC 2 cut(s) 26, 690
BciT130I CCWGG 1 cut(s) 239
BciVI GTATCC 1 cut(s) 730
BcoDI GTCTC 2 cut(s) 397, 567
BfaI CTAG 5 cut(s) 222, 458, 549, 732, 775
BfmI CTRYAG 2 cut(s) 165, 702
BfoI RGCGCY 1 cut(s) 458
BfuI GTATCC 1 cut(s) 730
BisI GCNGC 2 cut(s) 243, 500
BlnI CCTAGG 1 cut(s) 731
BlsI GCNGC 2 cut(s) 244, 501
Bme1390I CCNGG 1 cut(s) 239
BmgT120I GGNCC 1 cut(s) 35
BmiI GGNNCC 1 cut(s) 612
BmrFI CCNGG 1 cut(s) 239
BmsI GCATC 1 cut(s) 292
BpiI GAAGAC 1 cut(s) 475
BpmI CTGGAG 1 cut(s) 348
BsaHI GRCGYC 1 cut(s) 390
BsaI GGTCTC 1 cut(s) 567
BsaJI CCNNGG 2 cut(s) 204, 731
Bsc4I CCNNNNNNNGG 2 cut(s) 32, 528
Bse1I ACTGG 2 cut(s) 26, 331
BseBI CCWGG 1 cut(s) 239
BseDI CCNNGG 2 cut(s) 204, 731
BseGI GGATG 2 cut(s) 121, 682
BseLI CCNNNNNNNGG 2 cut(s) 32, 528
BseMII CTCAG 3 cut(s) 309, 408, 568
BseNI ACTGG 2 cut(s) 26, 331
BseXI GCAGC 1 cut(s) 229
BseYI CCCAGC 2 cut(s) 305, 451
BsgI GTGCAG 1 cut(s) 606
BshFI GGCC 2 cut(s) 37, 547
BshNI GGYRCC 1 cut(s) 610
BslI CCNNNNNNNGG 2 cut(s) 32, 528
BsmAI GTCTC 2 cut(s) 397, 567
BsmBI CGTCTC 1 cut(s) 397
BsnI GGCC 2 cut(s) 37, 547
Bso31I GGTCTC 1 cut(s) 567
BspACI CCGC 2 cut(s) 274, 499
BspANI GGCC 2 cut(s) 37, 547
BspCNI CTCAG 3 cut(s) 310, 409, 567
BspLI GGNNCC 1 cut(s) 612
BspMAI CTGCAG 1 cut(s) 169
BspT107I GGYRCC 1 cut(s) 610
BspTNI GGTCTC 1 cut(s) 567
BsrBI CCGCTC 1 cut(s) 274
BsrI ACTGG 2 cut(s) 26, 331
BssECI CCNNGG 2 cut(s) 204, 731
BssNI GRCGYC 1 cut(s) 390
BssT1I CCWWGG 2 cut(s) 204, 731
Bst2UI CCWGG 1 cut(s) 239
Bst4CI ACNGT 5 cut(s) 75, 182, 443, 578, 744
Bst6I CTCTTC 1 cut(s) 3
BstACI GRCGYC 1 cut(s) 390
BstDEI CTNAG 5 cut(s) 99, 318, 417, 554, 617
BstF5I GGATG 2 cut(s) 121, 682
BstH2I RGCGCY 1 cut(s) 458
BstHHI GCGC 1 cut(s) 457
BstMAI GTCTC 2 cut(s) 397, 567
BstMWI GCNNNNNNNGC 1 cut(s) 173
BstNI CCWGG 1 cut(s) 239
BstSCI CCNGG 1 cut(s) 237
BstSFI CTRYAG 2 cut(s) 165, 702
BstV1I GCAGC 1 cut(s) 229
BstV2I GAAGAC 1 cut(s) 475
BsuI GTATCC 1 cut(s) 730
BsuRI GGCC 2 cut(s) 37, 547
BtsCI GGATG 2 cut(s) 121, 682
BtsI GCAGTG 2 cut(s) 174, 768
BtsIMutI CAGTG 4 cut(s) 71, 174, 187, 768
CfoI GCGC 1 cut(s) 457
Cfr13I GGNCC 1 cut(s) 35
Csp6I GTAC 3 cut(s) 235, 492, 708
CviAII CATG 2 cut(s) 495, 503
CviQI GTAC 3 cut(s) 235, 492, 708
DdeI CTNAG 5 cut(s) 99, 318, 417, 554, 617
Eam1104I CTCTTC 1 cut(s) 3
EarI CTCTTC 1 cut(s) 3
Eco130I CCWWGG 2 cut(s) 204, 731
Eco31I GGTCTC 1 cut(s) 567
Eco47III AGCGCT 1 cut(s) 456
EcoRII CCWGG 1 cut(s) 237
EcoT14I CCWWGG 2 cut(s) 204, 731
EcoT22I ATGCAT 1 cut(s) 351
ErhI CCWWGG 2 cut(s) 204, 731
Esp3I CGTCTC 1 cut(s) 397
FaeI CATG 2 cut(s) 498, 506
FalI AAGNNNNNCTT 2 cut(s) 179, 211
FatI CATG 2 cut(s) 494, 502
FauNDI CATATG 1 cut(s) 345
Fnu4HI GCNGC 2 cut(s) 243, 500
FokI GGATG 2 cut(s) 128, 669
Fsp4HI GCNGC 2 cut(s) 243, 500
FspBI CTAG 5 cut(s) 222, 458, 549, 732, 775
GlaI GCGC 1 cut(s) 456
GluI GCNGC 2 cut(s) 243, 500
GsaI CCCAGC 2 cut(s) 309, 455
GsuI CTGGAG 1 cut(s) 348
HaeII RGCGCY 1 cut(s) 458
HaeIII GGCC 2 cut(s) 37, 547
HhaI GCGC 1 cut(s) 457
Hin1I GRCGYC 1 cut(s) 390
Hin1II CATG 2 cut(s) 498, 506
Hin6I GCGC 1 cut(s) 455
HinP1I GCGC 1 cut(s) 455
HindIII AAGCTT 1 cut(s) 193
HinfI GANTC 5 cut(s) 13, 89, 161, 265, 314
HphI GGTGA 1 cut(s) 311
Hpy166II GTNNAC 2 cut(s) 324, 446
Hpy188I TCNGA 6 cut(s) 88, 115, 160, 264, 319, 397
Hpy188III TCNNGA 2 cut(s) 93, 269
Hpy8I GTNNAC 2 cut(s) 324, 446
HpyAV CCTTC 2 cut(s) 271, 411
HpyCH4III ACNGT 5 cut(s) 75, 182, 443, 578, 744
HpyCH4IV ACGT 1 cut(s) 390
HpyCH4V TGCA 5 cut(s) 59, 167, 245, 349, 587
HpyF10VI GCNNNNNNNGC 1 cut(s) 173
HpyF3I CTNAG 5 cut(s) 99, 318, 417, 554, 617
HpySE526I ACGT 1 cut(s) 390
Hsp92I GRCGYC 1 cut(s) 390
Hsp92II CATG 2 cut(s) 498, 506
HspAI GCGC 1 cut(s) 455
LmnI GCTCC 1 cut(s) 95
Lsp1109I GCAGC 1 cut(s) 229
LweI GCATC 1 cut(s) 292
MaeI CTAG 5 cut(s) 222, 458, 549, 732, 775
MaeII ACGT 1 cut(s) 390
MaeIII GTNAC 1 cut(s) 480
MbiI CCGCTC 1 cut(s) 274
MboII GAAGA 4 cut(s) 20, 39, 199, 480
MluCI AATT 4 cut(s) 109, 429, 712, 761
MlyI GAGTC 4 cut(s) 22, 98, 274, 308
MmeI TCCRAC 1 cut(s) 550
MnlI CCTC 5 cut(s) 333, 563, 601, 624, 730
Mph1103I ATGCAT 1 cut(s) 351
MspR9I CCNGG 1 cut(s) 239
MvaI CCWGG 1 cut(s) 239
MwoI GCNNNNNNNGC 1 cut(s) 173
NdeI CATATG 1 cut(s) 345
NlaIII CATG 2 cut(s) 498, 506
NlaIV GGNNCC 1 cut(s) 612
NsiI ATGCAT 1 cut(s) 351
PfeI GAWTC 1 cut(s) 161
PflMI CCANNNNNTGG 1 cut(s) 32
PkrI GCNGC 2 cut(s) 244, 501
PleI GAGTC 4 cut(s) 21, 97, 273, 308
PpsI GAGTC 4 cut(s) 21, 97, 273, 308
Psp6I CCWGG 1 cut(s) 237
PspFI CCCAGC 2 cut(s) 305, 451
PspGI CCWGG 1 cut(s) 237
PspN4I GGNNCC 1 cut(s) 612
PspPI GGNCC 1 cut(s) 35
PsrI GAACNNNNNNTAC 4 cut(s) 390, 422, 637, 669
PstI CTGCAG 1 cut(s) 169
RsaI GTAC 3 cut(s) 236, 493, 709
RsaNI GTAC 3 cut(s) 235, 492, 708
SatI GCNGC 2 cut(s) 243, 500
Sau96I GGNCC 1 cut(s) 35
SchI GAGTC 4 cut(s) 22, 98, 274, 308
ScrFI CCNGG 1 cut(s) 239
SfaNI GCATC 1 cut(s) 292
SfcI CTRYAG 2 cut(s) 165, 702
Sse9I AATT 4 cut(s) 109, 429, 712, 761
SsiI CCGC 2 cut(s) 274, 499
SspMI CTAG 5 cut(s) 222, 458, 549, 732, 775
StyD4I CCNGG 1 cut(s) 237
StyI CCWWGG 2 cut(s) 204, 731
TaaI ACNGT 5 cut(s) 75, 182, 443, 578, 744
TaiI ACGT 1 cut(s) 393
TasI AATT 4 cut(s) 109, 429, 712, 761
TatI WGTACW 1 cut(s) 491
TauI GCSGC 1 cut(s) 502
TfiI GAWTC 1 cut(s) 161
TscAI CASTG 4 cut(s) 78, 174, 187, 775
TseI GCWGC 1 cut(s) 242
TspDTI ATGAA 3 cut(s) 39, 132, 368
TspRI CASTG 4 cut(s) 78, 174, 187, 775
Van91I CCANNNNNTGG 1 cut(s) 32
XapI RAATTY 2 cut(s) 109, 712
XmaJI CCTAGG 1 cut(s) 731
XspI CTAG 5 cut(s) 222, 458, 549, 732, 775
ZraI GACGTC 1 cut(s) 391
Zsp2I ATGCAT 1 cut(s) 351
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.