Rw2G018480

Oxidation resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0001099
Physical Location & Seq
Forward (+)
23951959 .. 23957216
5258 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G018480.1

Sequence Viewer

Length: 570 bp
ATGACAATTGCCTATTACATCTCTTGGAAAAATAAAGACTCAAATATAATTGGCGATCTATTGATCCCAGCCAGATTTGTTAGAACACGAAAAAGGGTTAGTTTCGGAGCGGAAAAAGCTACCACGAAAACATATAAAATTTCTGAGTCTGCTTCTCTTTTCTGGGCCGGGTCCAGTTCTTCTGGGCTTAGGGCTTCTTCTTCTTCTTTCTTCTTTTTTCTTCTGGTTGTTGGAGACCGTAAAGGTGCAGTTTTTGGTGGCTTGGTGGAGGCACCTCTAAGACCAACCAACAAGAAGTATCAGGGAACAAATGATACATTTGTTTTCACAAATACACCTGACCATCCTGTTATATATCGCCCTACAGGTACAAATTCATCCTCTTTGCTTCCTAGGGATACACAATTGAACGGATCAAGTTCAGTTTCAGAAACCTATGGGAATCCATGTCTTGCAAACTCAGAAGACTTTATGAAAGAAGTAGAGCTATGGGGTTTTGTTTATGCTACTAAGTATGAGGAAGTTCTTGCTCAAAGCCGTATGGAGGCACCTGGGATTTGCCGATGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TLD

Protein Analysis

189

Amino Acids

21.0

Weight (kDa)

9.23

Isoelectric Point (pI)

38.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TLD PF07534 73 - 126 1.5e-08 TLDc domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 271, 547
AccBSI CCGCTC 1 cut(s) 110
AciI CCGC 1 cut(s) 110
AclWI GGATC 2 cut(s) 58, 421
AcsI RAATTY 2 cut(s) 138, 373
AfaI GTAC 1 cut(s) 370
AfiI CCNNNNNNNGG 1 cut(s) 544
AgsI TTSAA 1 cut(s) 409
AjnI CCWGG 1 cut(s) 550
AluBI AGCT 2 cut(s) 119, 487
AluI AGCT 2 cut(s) 119, 487
Alw26I GTCTC 1 cut(s) 228
AlwI GGATC 2 cut(s) 58, 421
AoxI GGCC 1 cut(s) 165
ApoI RAATTY 2 cut(s) 138, 373
AspA2I CCTAGG 1 cut(s) 392
AspS9I GGNCC 2 cut(s) 165, 171
AsuC2I CCSGG 1 cut(s) 169
AvaII GGWCC 1 cut(s) 171
AvrII CCTAGG 1 cut(s) 392
BaeI ACNNNNGTAYC 2 cut(s) 306, 339
BanI GGYRCC 2 cut(s) 271, 547
BbsI GAAGAC 1 cut(s) 471
BccI CCATC 2 cut(s) 351, 558
BceAI ACGGC 1 cut(s) 522
BciT130I CCWGG 1 cut(s) 552
BciVI GTATCC 1 cut(s) 391
BcnI CCSGG 1 cut(s) 169
BcoDI GTCTC 1 cut(s) 228
BfaI CTAG 1 cut(s) 393
BfmI CTRYAG 1 cut(s) 363
BfuI GTATCC 1 cut(s) 391
BlnI CCTAGG 1 cut(s) 392
Bme1390I CCNGG 2 cut(s) 169, 552
Bme18I GGWCC 1 cut(s) 171
BmgT120I GGNCC 2 cut(s) 165, 171
BmiI GGNNCC 3 cut(s) 172, 273, 549
BmrFI CCNGG 2 cut(s) 169, 552
BpiI GAAGAC 1 cut(s) 471
Bpu10I CCTNAGC 1 cut(s) 188
BpuMI CCSGG 1 cut(s) 169
BsaI GGTCTC 1 cut(s) 228
BsaJI CCNNGG 2 cut(s) 392, 551
Bsc4I CCNNNNNNNGG 1 cut(s) 544
Bse1I ACTGG 1 cut(s) 174
BseBI CCWGG 1 cut(s) 552
BseDI CCNNGG 2 cut(s) 392, 551
BseGI GGATG 2 cut(s) 343, 377
BseLI CCNNNNNNNGG 1 cut(s) 544
BseMII CTCAG 2 cut(s) 135, 474
BseNI ACTGG 1 cut(s) 174
BseYI CCCAGC 1 cut(s) 67
BsgI GTGCAG 1 cut(s) 267
BshFI GGCC 1 cut(s) 167
BshNI GGYRCC 2 cut(s) 271, 547
BsiSI CCGG 1 cut(s) 168
BslI CCNNNNNNNGG 1 cut(s) 544
BsmAI GTCTC 1 cut(s) 228
BsnI GGCC 1 cut(s) 167
Bso31I GGTCTC 1 cut(s) 228
Bsp143I GATC 3 cut(s) 55, 63, 413
BspACI CCGC 1 cut(s) 110
BspANI GGCC 1 cut(s) 167
BspCNI CTCAG 2 cut(s) 136, 473
BspLI GGNNCC 3 cut(s) 172, 273, 549
BspPI GGATC 2 cut(s) 58, 421
BspT107I GGYRCC 2 cut(s) 271, 547
BspTNI GGTCTC 1 cut(s) 228
BsrBI CCGCTC 1 cut(s) 110
BsrI ACTGG 1 cut(s) 174
BssECI CCNNGG 2 cut(s) 392, 551
BssMI GATC 3 cut(s) 55, 63, 413
BssT1I CCWWGG 1 cut(s) 392
Bst2UI CCWGG 1 cut(s) 552
Bst4CI ACNGT 1 cut(s) 239
BstDEI CTNAG 5 cut(s) 144, 188, 278, 460, 510
BstF5I GGATG 2 cut(s) 343, 377
BstKTI GATC 3 cut(s) 58, 66, 416
BstMAI GTCTC 1 cut(s) 228
BstMBI GATC 3 cut(s) 55, 63, 413
BstMWI GCNNNNNNNGC 1 cut(s) 116
BstNI CCWGG 1 cut(s) 552
BstSCI CCNGG 2 cut(s) 167, 550
BstSFI CTRYAG 1 cut(s) 363
BstV2I GAAGAC 1 cut(s) 471
BsuI GTATCC 1 cut(s) 391
BsuRI GGCC 1 cut(s) 167
BtsCI GGATG 2 cut(s) 343, 377
Cfr13I GGNCC 2 cut(s) 165, 171
Csp6I GTAC 1 cut(s) 369
CviAII CATG 1 cut(s) 447
CviJI RGCY 8 cut(s) 71, 119, 167, 187, 194, 261, 487, 537
CviKI_1 RGCY 8 cut(s) 71, 119, 167, 187, 194, 261, 487, 537
CviQI GTAC 1 cut(s) 369
DdeI CTNAG 5 cut(s) 144, 188, 278, 460, 510
DpnI GATC 3 cut(s) 57, 65, 415
DpnII GATC 3 cut(s) 55, 63, 413
Eco130I CCWWGG 1 cut(s) 392
Eco31I GGTCTC 1 cut(s) 228
Eco47I GGWCC 1 cut(s) 171
EcoRII CCWGG 1 cut(s) 550
EcoT14I CCWWGG 1 cut(s) 392
ErhI CCWWGG 1 cut(s) 392
FaeI CATG 1 cut(s) 450
FatI CATG 1 cut(s) 446
FokI GGATG 2 cut(s) 330, 364
FspBI CTAG 1 cut(s) 393
GsaI CCCAGC 1 cut(s) 71
HaeIII GGCC 1 cut(s) 167
HapII CCGG 1 cut(s) 168
Hin1II CATG 1 cut(s) 450
HinfI GANTC 3 cut(s) 38, 146, 442
HpaII CCGG 1 cut(s) 168
Hpy188I TCNGA 4 cut(s) 107, 145, 430, 463
HpyCH4III ACNGT 1 cut(s) 239
HpyCH4V TGCA 2 cut(s) 248, 455
HpyF10VI GCNNNNNNNGC 1 cut(s) 116
HpyF3I CTNAG 5 cut(s) 144, 188, 278, 460, 510
Hsp92II CATG 1 cut(s) 450
Kzo9I GATC 3 cut(s) 55, 63, 413
LmnI GCTCC 1 cut(s) 107
MaeI CTAG 1 cut(s) 393
MalI GATC 3 cut(s) 57, 65, 415
MbiI CCGCTC 1 cut(s) 110
MboI GATC 3 cut(s) 55, 63, 413
MboII GAAGA 7 cut(s) 171, 189, 192, 195, 202, 212, 476
MfeI CAATTG 2 cut(s) 6, 404
MluCI AATT 5 cut(s) 6, 48, 138, 373, 404
MlyI GAGTC 2 cut(s) 32, 155
MmeI TCCRAC 1 cut(s) 211
MnlI CCTC 5 cut(s) 262, 285, 391, 511, 538
MspI CCGG 1 cut(s) 168
MspR9I CCNGG 2 cut(s) 169, 552
MunI CAATTG 2 cut(s) 6, 404
MvaI CCWGG 1 cut(s) 552
MwoI GCNNNNNNNGC 1 cut(s) 116
NciI CCSGG 1 cut(s) 169
NdeII GATC 3 cut(s) 55, 63, 413
NlaIII CATG 1 cut(s) 450
NlaIV GGNNCC 3 cut(s) 172, 273, 549
PfeI GAWTC 1 cut(s) 442
PleI GAGTC 2 cut(s) 32, 154
PpsI GAGTC 2 cut(s) 32, 154
Psp6I CCWGG 1 cut(s) 550
PspFI CCCAGC 1 cut(s) 67
PspGI CCWGG 1 cut(s) 550
PspN4I GGNNCC 3 cut(s) 172, 273, 549
PspPI GGNCC 2 cut(s) 165, 171
PsrI GAACNNNNNNTAC 2 cut(s) 298, 330
RsaI GTAC 1 cut(s) 370
RsaNI GTAC 1 cut(s) 369
Sau3AI GATC 3 cut(s) 55, 63, 413
Sau96I GGNCC 2 cut(s) 165, 171
SchI GAGTC 2 cut(s) 32, 155
ScrFI CCNGG 2 cut(s) 169, 552
SetI ASST 8 cut(s) 121, 247, 277, 340, 370, 437, 489, 553
SfcI CTRYAG 1 cut(s) 363
SinI GGWCC 1 cut(s) 171
Sse9I AATT 5 cut(s) 6, 48, 138, 373, 404
SsiI CCGC 1 cut(s) 110
SspMI CTAG 1 cut(s) 393
StyD4I CCNGG 2 cut(s) 167, 550
StyI CCWWGG 1 cut(s) 392
TaaI ACNGT 1 cut(s) 239
TasI AATT 5 cut(s) 6, 48, 138, 373, 404
TfiI GAWTC 1 cut(s) 442
TspDTI ATGAA 2 cut(s) 366, 488
TspGWI ACGGA 1 cut(s) 426
VpaK11BI GGWCC 1 cut(s) 171
XapI RAATTY 2 cut(s) 138, 373
XmaJI CCTAGG 1 cut(s) 392
XspI CTAG 1 cut(s) 393
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.