Rmu_sc0000431.1_g000017

Oxidation resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000431.1
OG0001099
Physical Location & Seq
Reverse (-)
111624 .. 119192
7569 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000431.1_g000017.1.cds

Sequence Viewer

Length: 1626 bp
atgtcggaatttaggactccagttacccgaggaacggaaggttcgcgactctcggagtacgtgagagaaagcatcggaatccatgtaggaattcaggactctcctcggtattgtgcactgatgacgggacagtggcagatggagctgggtgtgcagaacaagttcgtgagggagtggcttgatgagctcagagatgctctctatgttgctgacgacttgctggatgagatcaagctggaaatcgactctggaggcagcaacacaagtcagggcgtcaaaatcagggacatgggtaggccaaagagtcttcgcagcaaagcgtcccactttgtgactgatatcactactggattgctcaaccccatttctgacaaaccctccaaaccctctcccttctcctcttcctttttgtttggactgtgtctgtgtgaaactcttgttagaatggagtctgtgactgtgttattcttgtgtcagcaggaagatgtggatgggtccagaggaagtcaaaatggaacaatgagtgaagagagtccagctaatccagttgatgggcctgacacttcttcatttactgcatttctctactcactgttatcgtcatcagagtcgggagataagagcaaaagttcggatgaacaggttgatgaccaaatggataagagcaactcattgtctgattctgtagtgaaagcaaacagtgggaagggaagcttgttttccaaggggaaacacacacttagtaaagctatgtaccaggctgcaagatttggttggcaacgcagtcaagagcggaagggtaaccttgacgtgaaaggtgatgatgggaatgactctgagtttactggagttgagatgaggcatatgcataaagcacagaagcctgtggctttggttcatctaccagacgtctcagaaccttctttacttcttactgagaaaaatagaattgctctttacagttcactccgggcgctctacatggaggcatggcatatcactttcaaccctatacagaagaagtatgctttggcctggcctcagtttactggtaatagctctgaaactgttgttggagaccgtaaaggtgcagtttttggtggcttggtggaggcacctctaagaccaaccaacaagaagtatcagggaacaaatgatacatttgttttcacaaatacacctgaccatcctgttatatatcgccctacaggtgccaaccgctatttcacattgtgtgctacagactttttagctattggtgggggtggtcattttgcactctatttgaacagtgatatattgagtggatcaagttcagtttcagaaacctatgggaatccatatcttgcaaactcagaagactatgatgtgaaagaagtagaggctgataaagttaggaaggatgccaccacaataccacatatgagaaaaatgaaagaccttcaaatgtcaagtgattttgtgttgggaaagaattcagaggttggttttgcagagttgaagaagctttggcatttgcgagaagtacttcatatttcagggcttcataatattgtctatgttgaagatgctttagaggccaatataggggagaagaagtatcttgatggactagtttcttcatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TLD

Protein Analysis

541

Amino Acids

59.84

Weight (kDa)

5.63

Isoelectric Point (pI)

40.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 912
AccB1I GGYRCC 2 cut(s) 1114, 1211
AccB7I CCANNNNNTGG 1 cut(s) 551
AccBSI CCGCTC 1 cut(s) 793
AccII CGCG 1 cut(s) 46
AciI CCGC 2 cut(s) 793, 1219
AclWI GGATC 1 cut(s) 1315
AcsI RAATTY 3 cut(s) 8, 90, 1474
AcyI GRCGYC 2 cut(s) 273, 909
AdeI CACNNNGTG 2 cut(s) 331, 1233
AfaI GTAC 3 cut(s) 59, 755, 1527
AfiI CCNNNNNNNGG 3 cut(s) 34, 551, 1587
AgsI TTSAA 5 cut(s) 1006, 1288, 1445, 1501, 1565
AhlI ACTAGT 1 cut(s) 1612
AjiI CACGTC 1 cut(s) 811
AjnI CCWGG 2 cut(s) 756, 1034
AjuI GAANNNNNNNTTGG 6 cut(s) 1013, 1045, 1056, 1088, 1208, 1240
AluBI AGCT 9 cut(s) 145, 187, 235, 539, 714, 749, 1059, 1253, 1507
AluI AGCT 9 cut(s) 145, 187, 235, 539, 714, 749, 1059, 1253, 1507
Alw21I GWGCWC 2 cut(s) 118, 189
Alw26I GTCTC 2 cut(s) 916, 1071
Alw44I GTGCAC 1 cut(s) 114
AlwI GGATC 1 cut(s) 1315
Ama87I CYCGRG 1 cut(s) 27
AoxI GGCC 5 cut(s) 296, 554, 1032, 1037, 1578
ApaLI GTGCAC 1 cut(s) 114
ApeKI GCWGC 3 cut(s) 255, 312, 761
ApoI RAATTY 3 cut(s) 8, 90, 1474
Asp700I GAANNNNTTC 3 cut(s) 161, 1474, 1527
AspLEI GCGC 1 cut(s) 976
AspS9I GGNCC 2 cut(s) 495, 554
AsuC2I CCSGG 1 cut(s) 971
AsuHPI GGTGA 1 cut(s) 830
AvaI CYCGRG 1 cut(s) 27
AvaII GGWCC 1 cut(s) 495
BaeGI GKGCMC 1 cut(s) 118
BaeI ACNNNNGTAYC 2 cut(s) 1149, 1182
BanI GGYRCC 2 cut(s) 1114, 1211
BanII GRGCYC 1 cut(s) 189
BbsI GAAGAC 2 cut(s) 299, 1365
Bbv12I GWGCWC 2 cut(s) 118, 189
BbvI GCAGC 3 cut(s) 267, 324, 748
BccI CCATC 6 cut(s) 133, 485, 545, 818, 1194, 1601
BciT130I CCWGG 2 cut(s) 758, 1036
BcnI CCSGG 1 cut(s) 971
BcoDI GTCTC 2 cut(s) 916, 1071
BcuI ACTAGT 1 cut(s) 1612
BfaI CTAG 1 cut(s) 1613
BfmI CTRYAG 3 cut(s) 684, 1206, 1239
BfoI RGCGCY 1 cut(s) 977
BisI GCNGC 3 cut(s) 256, 313, 762
BlsI GCNGC 3 cut(s) 257, 314, 763
BmcAI AGTACT 1 cut(s) 1527
Bme1390I CCNGG 3 cut(s) 758, 971, 1036
Bme18I GGWCC 1 cut(s) 495
BmeT110I CYCGRG 1 cut(s) 27
BmgBI CACGTC 1 cut(s) 811
BmgT120I GGNCC 2 cut(s) 495, 554
BmiI GGNNCC 3 cut(s) 496, 1116, 1213
BmrFI CCNGG 3 cut(s) 758, 971, 1036
BmsI GCATC 4 cut(s) 81, 184, 1393, 1558
BpiI GAAGAC 2 cut(s) 299, 1365
BplI GAGNNNNNCTC 2 cut(s) 183, 215
BpmI CTGGAG 2 cut(s) 270, 867
BpuMI CCSGG 1 cut(s) 971
BsaAI YACGTR 1 cut(s) 61
BsaHI GRCGYC 2 cut(s) 273, 909
BsaI GGTCTC 1 cut(s) 1071
BsaJI CCNNGG 3 cut(s) 28, 104, 723
BsaXI ACNNNNNCTCC 4 cut(s) 362, 392, 1583, 1613
Bsc4I CCNNNNNNNGG 3 cut(s) 34, 551, 1587
Bse1I ACTGG 5 cut(s) 20, 352, 545, 850, 1054
BseBI CCWGG 2 cut(s) 758, 1036
BseDI CCNNGG 3 cut(s) 28, 104, 723
BseGI GGATG 5 cut(s) 229, 496, 640, 1186, 1408
BseLI CCNNNNNNNGG 3 cut(s) 34, 551, 1587
BseMII CTCAG 6 cut(s) 202, 828, 927, 927, 1055, 1368
BseNI ACTGG 5 cut(s) 20, 352, 545, 850, 1054
BseRI GAGGAG 2 cut(s) 93, 388
BseSI GKGCMC 1 cut(s) 118
BseXI GCAGC 3 cut(s) 267, 324, 748
BseYI CCCAGC 1 cut(s) 145
BsgI GTGCAG 2 cut(s) 173, 1110
Bsh1236I CGCG 1 cut(s) 46
BshFI GGCC 5 cut(s) 298, 556, 1034, 1039, 1580
BshNI GGYRCC 2 cut(s) 1114, 1211
BsiHKAI GWGCWC 2 cut(s) 118, 189
BsiHKCI CYCGRG 1 cut(s) 27
BsiSI CCGG 1 cut(s) 970
BslFI GGGAC 3 cut(s) 141, 299, 307
BslI CCNNNNNNNGG 3 cut(s) 34, 551, 1587
BsmAI GTCTC 2 cut(s) 916, 1071
BsmBI CGTCTC 1 cut(s) 916
BsmFI GGGAC 3 cut(s) 141, 299, 307
BsnI GGCC 5 cut(s) 298, 556, 1034, 1039, 1580
Bso31I GGTCTC 1 cut(s) 1071
BsoBI CYCGRG 1 cut(s) 27
Bsp1286I GDGCHC 2 cut(s) 118, 189
Bsp143I GATC 2 cut(s) 228, 1307
Bsp68I TCGCGA 1 cut(s) 46
BspACI CCGC 2 cut(s) 793, 1219
BspANI GGCC 5 cut(s) 298, 556, 1034, 1039, 1580
BspCNI CTCAG 6 cut(s) 201, 829, 926, 928, 1054, 1367
BspFNI CGCG 1 cut(s) 46
BspHI TCATGA 1 cut(s) 1622
BspLI GGNNCC 3 cut(s) 496, 1116, 1213
BspPI GGATC 1 cut(s) 1315
BspT107I GGYRCC 2 cut(s) 1114, 1211
BspTNI GGTCTC 1 cut(s) 1071
BsrBI CCGCTC 1 cut(s) 793
BsrI ACTGG 5 cut(s) 20, 352, 545, 850, 1054
BssECI CCNNGG 3 cut(s) 28, 104, 723
BssMI GATC 2 cut(s) 228, 1307
BssNI GRCGYC 2 cut(s) 273, 909
BssT1I CCWWGG 1 cut(s) 723
Bst2UI CCWGG 2 cut(s) 758, 1036
Bst4CI ACNGT 9 cut(s) 132, 420, 460, 594, 701, 962, 1069, 1082, 1292
Bst6I CTCTTC 2 cut(s) 406, 522
BstACI GRCGYC 2 cut(s) 273, 909
BstBAI YACGTR 1 cut(s) 61
BstDEI CTNAG 8 cut(s) 188, 740, 837, 913, 936, 1041, 1121, 1354
BstEII GGTNACC 1 cut(s) 800
BstF5I GGATG 5 cut(s) 229, 496, 640, 1186, 1408
BstFNI CGCG 1 cut(s) 46
BstH2I RGCGCY 1 cut(s) 977
BstHHI GCGC 1 cut(s) 976
BstKTI GATC 2 cut(s) 231, 1310
BstMAI GTCTC 2 cut(s) 916, 1071
BstMBI GATC 2 cut(s) 228, 1307
BstMWI GCNNNNNNNGC 4 cut(s) 142, 151, 184, 1577
BstNI CCWGG 2 cut(s) 758, 1036
BstPI GGTNACC 1 cut(s) 800
BstSCI CCNGG 3 cut(s) 756, 969, 1034
BstSFI CTRYAG 3 cut(s) 684, 1206, 1239
BstSLI GKGCMC 1 cut(s) 118
BstUI CGCG 1 cut(s) 46
BstV1I GCAGC 3 cut(s) 267, 324, 748
BstV2I GAAGAC 2 cut(s) 299, 1365
BsuRI GGCC 5 cut(s) 298, 556, 1034, 1039, 1580
BtrI CACGTC 1 cut(s) 811
BtsCI GGATG 5 cut(s) 229, 496, 640, 1186, 1408
BtsIMutI CAGTG 5 cut(s) 116, 137, 590, 706, 1297
BtuMI TCGCGA 1 cut(s) 46
CciI TCATGA 1 cut(s) 1622
CfoI GCGC 1 cut(s) 976
Cfr13I GGNCC 2 cut(s) 495, 554
CseI GACGC 2 cut(s) 262, 309
Csp6I GTAC 3 cut(s) 58, 754, 1526
CviAII CATG 5 cut(s) 83, 289, 982, 990, 1623
CviQI GTAC 3 cut(s) 58, 754, 1526
DdeI CTNAG 8 cut(s) 188, 740, 837, 913, 936, 1041, 1121, 1354
DpnI GATC 2 cut(s) 230, 1309
DpnII GATC 2 cut(s) 228, 1307
DraIII CACNNNGTG 2 cut(s) 331, 1233
Eam1104I CTCTTC 2 cut(s) 406, 522
EarI CTCTTC 2 cut(s) 406, 522
Ecl136II GAGCTC 1 cut(s) 187
Eco130I CCWWGG 1 cut(s) 723
Eco24I GRGCYC 1 cut(s) 189
Eco31I GGTCTC 1 cut(s) 1071
Eco32I GATATC 1 cut(s) 340
Eco47I GGWCC 1 cut(s) 495
Eco53kI GAGCTC 1 cut(s) 187
Eco88I CYCGRG 1 cut(s) 27
Eco91I GGTNACC 1 cut(s) 800
EcoICRI GAGCTC 1 cut(s) 187
EcoO65I GGTNACC 1 cut(s) 800
EcoRI GAATTC 2 cut(s) 90, 1474
EcoRII CCWGG 2 cut(s) 756, 1034
EcoRV GATATC 1 cut(s) 340
EcoT14I CCWWGG 1 cut(s) 723
EcoT22I ATGCAT 1 cut(s) 870
EcoT38I GRGCYC 1 cut(s) 189
ErhI CCWWGG 1 cut(s) 723
Esp3I CGTCTC 1 cut(s) 916
FaeI CATG 5 cut(s) 86, 292, 985, 993, 1626
FalI AAGNNNNNCTT 2 cut(s) 698, 730
FaqI GGGAC 3 cut(s) 141, 299, 307
FatI CATG 5 cut(s) 82, 288, 981, 989, 1622
FauNDI CATATG 2 cut(s) 864, 1422
Fnu4HI GCNGC 3 cut(s) 256, 313, 762
FokI GGATG 5 cut(s) 236, 503, 647, 1173, 1415
FriOI GRGCYC 1 cut(s) 189
Fsp4HI GCNGC 3 cut(s) 256, 313, 762
FspBI CTAG 1 cut(s) 1613
GlaI GCGC 1 cut(s) 975
GluI GCNGC 3 cut(s) 256, 313, 762
GsaI CCCAGC 1 cut(s) 149
GsuI CTGGAG 2 cut(s) 270, 867
HaeII RGCGCY 1 cut(s) 977
HaeIII GGCC 5 cut(s) 298, 556, 1034, 1039, 1580
HapII CCGG 1 cut(s) 970
HgaI GACGC 2 cut(s) 262, 309
HhaI GCGC 1 cut(s) 976
Hin1I GRCGYC 2 cut(s) 273, 909
Hin1II CATG 5 cut(s) 86, 292, 985, 993, 1626
Hin6I GCGC 1 cut(s) 974
HinP1I GCGC 1 cut(s) 974
HindIII AAGCTT 2 cut(s) 712, 1505
HpaII CCGG 1 cut(s) 970
HphI GGTGA 1 cut(s) 830
Hpy166II GTNNAC 4 cut(s) 116, 843, 965, 1047
Hpy188III TCNNGA 9 cut(s) 45, 95, 166, 249, 498, 612, 788, 1604, 1623
Hpy8I GTNNAC 4 cut(s) 116, 843, 965, 1047
HpyAV CCTTC 7 cut(s) 32, 403, 700, 790, 930, 1393, 1451
HpyCH4III ACNGT 9 cut(s) 132, 420, 460, 594, 701, 962, 1069, 1082, 1292
HpyCH4IV ACGT 3 cut(s) 60, 810, 909
HpyCH4V TGCA 9 cut(s) 116, 154, 578, 764, 868, 1091, 1277, 1349, 1493
HpyF10VI GCNNNNNNNGC 4 cut(s) 142, 151, 184, 1577
HpyF3I CTNAG 8 cut(s) 188, 740, 837, 913, 936, 1041, 1121, 1354
HpySE526I ACGT 3 cut(s) 60, 810, 909
Hsp92I GRCGYC 2 cut(s) 273, 909
Hsp92II CATG 5 cut(s) 86, 292, 985, 993, 1626
HspAI GCGC 1 cut(s) 974
Kzo9I GATC 2 cut(s) 228, 1307
LmnI GCTCC 1 cut(s) 142
Lsp1109I GCAGC 3 cut(s) 267, 324, 748
LweI GCATC 4 cut(s) 81, 184, 1393, 1558
MaeI CTAG 1 cut(s) 1613
MaeII ACGT 3 cut(s) 60, 810, 909
MaeIII GTNAC 4 cut(s) 22, 331, 454, 800
MalI GATC 2 cut(s) 230, 1309
MbiI CCGCTC 1 cut(s) 793
MboI GATC 2 cut(s) 228, 1307
MhlI GDGCHC 2 cut(s) 118, 189
MluCI AATT 4 cut(s) 8, 90, 948, 1474
MlyI GAGTC 9 cut(s) 10, 42, 92, 239, 313, 458, 541, 617, 827
MmeI TCCRAC 1 cut(s) 1054
Mph1103I ATGCAT 1 cut(s) 870
MroXI GAANNNNTTC 3 cut(s) 161, 1474, 1527
MspI CCGG 1 cut(s) 970
MspR9I CCNGG 3 cut(s) 758, 971, 1036
MvaI CCWGG 2 cut(s) 758, 1036
MvnI CGCG 1 cut(s) 46
MwoI GCNNNNNNNGC 4 cut(s) 142, 151, 184, 1577
NciI CCSGG 1 cut(s) 971
NdeI CATATG 2 cut(s) 864, 1422
NdeII GATC 2 cut(s) 228, 1307
NlaIII CATG 5 cut(s) 86, 292, 985, 993, 1626
NlaIV GGNNCC 3 cut(s) 496, 1116, 1213
NmuCI GTSAC 2 cut(s) 331, 454
NruI TCGCGA 1 cut(s) 46
NsiI ATGCAT 1 cut(s) 870
PagI TCATGA 1 cut(s) 1622
PdmI GAANNNNTTC 3 cut(s) 161, 1474, 1527
PfeI GAWTC 3 cut(s) 78, 680, 1336
PflFI GACNNNGTC 1 cut(s) 420
PflMI CCANNNNNTGG 1 cut(s) 551
PkrI GCNGC 3 cut(s) 257, 314, 763
PleI GAGTC 9 cut(s) 10, 42, 92, 239, 312, 457, 540, 616, 827
PpsI GAGTC 9 cut(s) 10, 42, 92, 239, 312, 457, 540, 616, 827
Ppu21I YACGTR 1 cut(s) 61
Psp124BI GAGCTC 1 cut(s) 189
Psp6I CCWGG 2 cut(s) 756, 1034
PspEI GGTNACC 1 cut(s) 800
PspFI CCCAGC 1 cut(s) 145
PspGI CCWGG 2 cut(s) 756, 1034
PspN4I GGNNCC 3 cut(s) 496, 1116, 1213
PspPI GGNCC 2 cut(s) 495, 554
PsrI GAACNNNNNNTAC 4 cut(s) 909, 941, 1141, 1173
PsyI GACNNNGTC 1 cut(s) 420
RruI TCGCGA 1 cut(s) 46
RsaI GTAC 3 cut(s) 59, 755, 1527
RsaNI GTAC 3 cut(s) 58, 754, 1526
SacI GAGCTC 1 cut(s) 189
SatI GCNGC 3 cut(s) 256, 313, 762
Sau3AI GATC 2 cut(s) 228, 1307
Sau96I GGNCC 2 cut(s) 495, 554
ScaI AGTACT 1 cut(s) 1527
SchI GAGTC 9 cut(s) 10, 42, 92, 239, 313, 458, 541, 617, 827
ScrFI CCNGG 3 cut(s) 758, 971, 1036
SduI GDGCHC 2 cut(s) 118, 189
SfaNI GCATC 4 cut(s) 81, 184, 1393, 1558
SfcI CTRYAG 3 cut(s) 684, 1206, 1239
SinI GGWCC 1 cut(s) 495
SpeI ACTAGT 1 cut(s) 1612
Sse9I AATT 4 cut(s) 8, 90, 948, 1474
SsiI CCGC 2 cut(s) 793, 1219
SspI AATATT 1 cut(s) 1552
SspMI CTAG 1 cut(s) 1613
SstI GAGCTC 1 cut(s) 189
StyD4I CCNGG 3 cut(s) 756, 969, 1034
StyI CCWWGG 1 cut(s) 723
TaaI ACNGT 9 cut(s) 132, 420, 460, 594, 701, 962, 1069, 1082, 1292
TaiI ACGT 3 cut(s) 63, 813, 912
TaqI TCGA 1 cut(s) 243
TasI AATT 4 cut(s) 8, 90, 948, 1474
TatI WGTACW 1 cut(s) 1525
TfiI GAWTC 3 cut(s) 78, 680, 1336
TscAI CASTG 5 cut(s) 123, 137, 597, 706, 1297
TseFI GTSAC 2 cut(s) 331, 454
TseI GCWGC 3 cut(s) 255, 312, 761
Tsp45I GTSAC 2 cut(s) 331, 454
TspDTI ATGAA 7 cut(s) 558, 651, 887, 1448, 1520, 1535, 1611
TspGWI ACGGA 1 cut(s) 50
TspRI CASTG 5 cut(s) 123, 137, 597, 706, 1297
Tth111I GACNNNGTC 1 cut(s) 420
Van91I CCANNNNNTGG 1 cut(s) 551
VneI GTGCAC 1 cut(s) 114
VpaK11BI GGWCC 1 cut(s) 495
XapI RAATTY 3 cut(s) 8, 90, 1474
XmnI GAANNNNTTC 3 cut(s) 161, 1474, 1527
XspI CTAG 1 cut(s) 1613
ZraI GACGTC 1 cut(s) 910
ZrmI AGTACT 1 cut(s) 1527
Zsp2I ATGCAT 1 cut(s) 870
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.