Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001059

Physical Location & Seq

Genomic Coordinates Forward (+)

3423381 .. 3424720

Gene Structure 1340 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G10830.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

ATGGCAGGATTGTTTGATAAACAAGCCGATCTATACCTTGACGCCAGACCTAATTACCCCTCTGAGTGGTTCTCGAAGCTCGCTGATCTCACCGATCACCACGGTTTAGCCTGGGATGCTGCCACCGGAAATGGCCAAGCAGCTCTCGCCGTTGCAGAGCATTACGAGAGTGTCGTAGCAACGGACGTGAGTGAATCGCAGCTGAAGCTAGCAACGCCACATCCGAAAATCAATTATCGCCATACGCCGACGTCAATGACCGACGACGAGCTAGTGGAATTAATCGGAGGAGAAAACTCAGTGGATCTAATCACGGTCGCCCAAGGCGTACACTGGTTCGATCTCCCTAGGTTCTACTCAGTGGCCACACGACTCCTCCGTAAACCAGGCGGAATCATCGCTGTCTGGGGATACAACGACGTCATAGTGAGTCCAGAGTTCGACGCCGTCCAGTATCGGCTCCACGCCACAACGCTGCCGTTTTGGAAGTATCCGTACATTCAGCACATCTTCGATTCGTACGAAGCATTGCCGTTTCCTTTCGAAAATGTTGGGATGGGATCAGAAGGGGAGCCATTAAAGCTGGAGATGCCTAAAACGACGTCGTTTGAAGGGATCATAAGGATGTTTAAATCATGGTCGGCCATCGTCACGGCGAGAGAGAAAGGCGTCGAGTTGTTACCGGAGAGTTTGGTGAGAGAGCTTGAAACCGCTTGGGGAGGTTCTGATCTGGTTCGTTCCGTCGTTTACAAAGCTTTTATGATTGCAGGAAAAGTTAGAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0008152 GO:0008168 GO:0008757 GO:0016740 GO:0016741 GO:0032259 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_11

Protein Analysis

261

Amino Acids

29.21

Weight (kDa)

5.17

Isoelectric Point (pI)

27.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltransf_11	PF08241	39 - 134	6.6e-08	Methyltransferase domain
Methyltransf_25	PF13649	39 - 130	3.9e-07	Methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001059)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G22530 AT4G22530 AT5G10830
fragaria_vesca	FvH4_5g02050 FvH4_5g34810 FvH4_5g34810
malus_domestica	MD01G1117600.v1.1 MD01G1117900.v1.1 MD07G1186100.v1.1 MD08G1242500.v1.1 MD08G1242800.v1.1
prunus_persica	Prupe.1G580000_v2.0.a1 Prupe.1G580100_v2.0.a1 Prupe.4G160700_v2.0.a1
pyrus_communis	pycom01g14530 pycom08g21040 pycom15g38510
rosa_chinensis	RchiOBHm_Chr1g0334721 RchiOBHm_Chr7g0198261 RchiOBHm_Chr7g0235451 RchiOBHm_Chr7g0235491
rosa_laevigata	RLG00000001155 RLG00000001156 RLG00000003879 RLG00000029427 RLG00000029428 RLG00000029430
rosa_multiflora	Rmu_co8155022.1_g000001 Rmu_co8423201.1_g000001 Rmu_sc0000574.1_g000002 Rmu_sc0002892.1_g000013 Rmu_sc0002892.1_g000015 Rmu_sc0004498.1_g000005 Rmu_sc0004498.1_g000007 Rmu_sc0006031.1_g000022
rosa_roxburghii	Rroxscaffold_3G00225960 Rroxscaffold_3G00225980 Rroxscaffold_4G00316640
rosa_rugosa	Rorug01G0115200 Rorug01G0115300 Rorug07G0046400 Rorug07G0290900 Rorug07G0291000 Rorug07G0291100 Rorug07G0291200
rosa_samantha	Rh1BG107500 Rh1CG132300 Rh1DG144400 Rh7AG169900 Rh7AG446300 Rh7BG173100 Rh7BG418000 Rh7DG172300 Rh7DG434700 Rh7DG434800
rosa_wichuraiana	Rw1G011580 Rw7G014880 Rw7G037030 Rw7G037040 Rw7G037050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	3 cut(s)	254, 423, 605
AciI	CCGC	2 cut(s)	390, 711
AclWI	GGATC	3 cut(s)	312, 568, 623
AcoI	YGGCCR	3 cut(s)	133, 363, 642
AcuI	CTGAAG	1 cut(s)	224
AcyI	GRCGYC	6 cut(s)	42, 251, 420, 444, 602, 669
AfaI	GTAC	3 cut(s)	330, 497, 521
AfiI	CCNNNNNNNGG	1 cut(s)	66
AgsI	TTSAA	2 cut(s)	611, 707
AjiI	CACGTC	1 cut(s)	187
AjnI	CCWGG	2 cut(s)	110, 385
AluBI	AGCT	8 cut(s)	79, 143, 202, 208, 271, 583, 703, 755
AluI	AGCT	8 cut(s)	79, 143, 202, 208, 271, 583, 703, 755
AlwI	GGATC	3 cut(s)	312, 568, 623
AoxI	GGCC	3 cut(s)	133, 363, 642
ApeKI	GCWGC	4 cut(s)	119, 140, 199, 475
AseI	ATTAAT	1 cut(s)	281
AspA2I	CCTAGG	1 cut(s)	347
AsuHPI	GGTGA	3 cut(s)	82, 89, 706
AsuII	TTCGAA	1 cut(s)	543
AsuNHI	GCTAGC	1 cut(s)	208
AvrII	CCTAGG	1 cut(s)	347
BalI	TGGCCA	2 cut(s)	135, 365
BarI	GAAGNNNNNNTAC	2 cut(s)	479, 511
BbvI	GCAGC	4 cut(s)	106, 152, 211, 462
BccI	CCATC	2 cut(s)	550, 653
BceAI	ACGGC	5 cut(s)	134, 431, 463, 517, 669
BciT130I	CCWGG	2 cut(s)	112, 387
BciVI	GTATCC	2 cut(s)	404, 501
BfaI	CTAG	3 cut(s)	209, 272, 348
BfuI	GTATCC	2 cut(s)	404, 501
BisI	GCNGC	4 cut(s)	120, 141, 200, 476
BlnI	CCTAGG	1 cut(s)	347
BlsI	GCNGC	4 cut(s)	121, 142, 201, 477
Bme1390I	CCNGG	2 cut(s)	112, 387
BmgBI	CACGTC	1 cut(s)	187
BmiI	GGNNCC	2 cut(s)	461, 573
BmrFI	CCNGG	2 cut(s)	112, 387
BmsI	GCATC	2 cut(s)	106, 579
BmtI	GCTAGC	1 cut(s)	212
BplI	GAGNNNNNCTC	2 cut(s)	56, 88
BpmI	CTGGAG	1 cut(s)	605
Bpu14I	TTCGAA	1 cut(s)	543
BsaHI	GRCGYC	6 cut(s)	42, 251, 420, 444, 602, 669
BsaJI	CCNNGG	4 cut(s)	100, 111, 322, 347
BsaWI	WCCGGW	2 cut(s)	125, 682
BsaXI	ACNNNNNCTCC	2 cut(s)	360, 390
Bsc4I	CCNNNNNNNGG	1 cut(s)	66
Bse1I	ACTGG	2 cut(s)	338, 451
Bse3DI	GCAATG	1 cut(s)	527
BseBI	CCWGG	2 cut(s)	112, 387
BseDI	CCNNGG	4 cut(s)	100, 111, 322, 347
BseGI	GGATG	4 cut(s)	121, 220, 561, 630
BseLI	CCNNNNNNNGG	1 cut(s)	66
BseMI	GCAATG	1 cut(s)	527
BseMII	CTCAG	3 cut(s)	54, 312, 372
BseNI	ACTGG	2 cut(s)	338, 451
BseRI	GAGGAG	2 cut(s)	303, 365
BseXI	GCAGC	4 cut(s)	106, 152, 211, 462
Bsh1285I	CGRYCG	1 cut(s)	318
BshFI	GGCC	3 cut(s)	135, 365, 644
BsiEI	CGRYCG	1 cut(s)	318
BsiSI	CCGG	2 cut(s)	126, 683
BsiWI	CGTACG	1 cut(s)	519
BslI	CCNNNNNNNGG	1 cut(s)	66
BsnI	GGCC	3 cut(s)	135, 365, 644
Bsp119I	TTCGAA	1 cut(s)	543
Bsp143I	GATC	8 cut(s)	28, 85, 94, 304, 340, 560, 615, 727
BspACI	CCGC	2 cut(s)	390, 711
BspANI	GGCC	3 cut(s)	135, 365, 644
BspCNI	CTCAG	3 cut(s)	55, 311, 371
BspLI	GGNNCC	2 cut(s)	461, 573
BspOI	GCTAGC	1 cut(s)	212
BspPI	GGATC	3 cut(s)	312, 568, 623
BspT104I	TTCGAA	1 cut(s)	543
BsrDI	GCAATG	1 cut(s)	527
BsrI	ACTGG	2 cut(s)	338, 451
BssECI	CCNNGG	4 cut(s)	100, 111, 322, 347
BssMI	GATC	8 cut(s)	28, 85, 94, 304, 340, 560, 615, 727
BssNI	GRCGYC	6 cut(s)	42, 251, 420, 444, 602, 669
BssT1I	CCWWGG	2 cut(s)	322, 347
Bst2UI	CCWGG	2 cut(s)	112, 387
Bst4CI	ACNGT	2 cut(s)	104, 316
BstACI	GRCGYC	6 cut(s)	42, 251, 420, 444, 602, 669
BstBI	TTCGAA	1 cut(s)	543
BstC8I	GCNNGC	2 cut(s)	81, 210
BstDEI	CTNAG	3 cut(s)	63, 298, 358
BstDSI	CCRYGG	1 cut(s)	100
BstF5I	GGATG	4 cut(s)	121, 220, 561, 630
BstKTI	GATC	8 cut(s)	31, 88, 97, 307, 343, 563, 618, 730
BstMBI	GATC	8 cut(s)	28, 85, 94, 304, 340, 560, 615, 727
BstMCI	CGRYCG	1 cut(s)	318
BstMWI	GCNNNNNNNGC	6 cut(s)	116, 146, 205, 214, 580, 589
BstNI	CCWGG	2 cut(s)	112, 387
BstSCI	CCNGG	2 cut(s)	110, 385
BstV1I	GCAGC	4 cut(s)	106, 152, 211, 462
BstX2I	RGATCY	1 cut(s)	304
BstYI	RGATCY	1 cut(s)	304
BsuI	GTATCC	2 cut(s)	404, 501
BsuRI	GGCC	3 cut(s)	135, 365, 644
BtgI	CCRYGG	1 cut(s)	100
BtgZI	GCGATG	1 cut(s)	382
BtrI	CACGTC	1 cut(s)	187
BtsCI	GGATG	4 cut(s)	121, 220, 561, 630
BtsIMutI	CAGTG	3 cut(s)	306, 331, 366
Cac8I	GCNNGC	2 cut(s)	81, 210
CseI	GACGC	3 cut(s)	50, 452, 658
Csp6I	GTAC	3 cut(s)	329, 496, 520
CviAII	CATG	1 cut(s)	636
CviQI	GTAC	3 cut(s)	329, 496, 520
DdeI	CTNAG	3 cut(s)	63, 298, 358
DpnI	GATC	8 cut(s)	30, 87, 96, 306, 342, 562, 617, 729
DpnII	GATC	8 cut(s)	28, 85, 94, 304, 340, 560, 615, 727
DraI	TTTAAA	1 cut(s)	631
EaeI	YGGCCR	3 cut(s)	133, 363, 642
EciI	GGCGGA	1 cut(s)	405
Eco130I	CCWWGG	2 cut(s)	322, 347
Eco57I	CTGAAG	1 cut(s)	224
EcoRII	CCWGG	2 cut(s)	110, 385
EcoT14I	CCWWGG	2 cut(s)	322, 347
ErhI	CCWWGG	2 cut(s)	322, 347
FaeI	CATG	1 cut(s)	639
FaiI	YATR	6 cut(s)	34, 243, 425, 620, 637, 761
FatI	CATG	1 cut(s)	635
Fnu4HI	GCNGC	4 cut(s)	120, 141, 200, 476
FokI	GGATG	4 cut(s)	128, 207, 568, 637
Fsp4HI	GCNGC	4 cut(s)	120, 141, 200, 476
FspBI	CTAG	3 cut(s)	209, 272, 348
GluI	GCNGC	4 cut(s)	120, 141, 200, 476
GsuI	CTGGAG	1 cut(s)	605
HaeIII	GGCC	3 cut(s)	135, 365, 644
HapII	CCGG	2 cut(s)	126, 683
HgaI	GACGC	3 cut(s)	50, 452, 658
Hin1I	GRCGYC	6 cut(s)	42, 251, 420, 444, 602, 669
Hin1II	CATG	1 cut(s)	639
HindIII	AAGCTT	1 cut(s)	753
HinfI	GANTC	5 cut(s)	194, 372, 393, 430, 515
HpaII	CCGG	2 cut(s)	126, 683
HphI	GGTGA	3 cut(s)	82, 89, 706
Hpy166II	GTNNAC	3 cut(s)	331, 383, 748
Hpy188I	TCNGA	5 cut(s)	64, 225, 287, 565, 727
Hpy188III	TCNNGA	2 cut(s)	73, 434
Hpy8I	GTNNAC	3 cut(s)	331, 383, 748
Hpy99I	CGWCG	9 cut(s)	253, 266, 269, 422, 446, 604, 607, 674, 746
HpyAV	CCTTC	2 cut(s)	560, 605
HpyCH4III	ACNGT	2 cut(s)	104, 316
HpyCH4IV	ACGT	4 cut(s)	186, 251, 420, 602
HpyCH4V	TGCA	2 cut(s)	155, 767
HpyF10VI	GCNNNNNNNGC	6 cut(s)	116, 146, 205, 214, 580, 589
HpyF3I	CTNAG	3 cut(s)	63, 298, 358
HpySE526I	ACGT	4 cut(s)	186, 251, 420, 602
Hsp92I	GRCGYC	6 cut(s)	42, 251, 420, 444, 602, 669
Hsp92II	CATG	1 cut(s)	639
Kzo9I	GATC	8 cut(s)	28, 85, 94, 304, 340, 560, 615, 727
LmnI	GCTCC	2 cut(s)	465, 571
Lsp1109I	GCAGC	4 cut(s)	106, 152, 211, 462
LweI	GCATC	2 cut(s)	106, 579
MaeI	CTAG	3 cut(s)	209, 272, 348
MaeII	ACGT	4 cut(s)	186, 251, 420, 602
MaeIII	GTNAC	2 cut(s)	649, 678
MalI	GATC	8 cut(s)	30, 87, 96, 306, 342, 562, 617, 729
MboI	GATC	8 cut(s)	28, 85, 94, 304, 340, 560, 615, 727
MboII	GAAGA	1 cut(s)	502
MflI	RGATCY	1 cut(s)	304
MlsI	TGGCCA	2 cut(s)	135, 365
MluCI	AATT	3 cut(s)	52, 232, 278
MluNI	TGGCCA	2 cut(s)	135, 365
MlyI	GAGTC	2 cut(s)	366, 439
MnlI	CCTC	4 cut(s)	70, 281, 386, 713
Mox20I	TGGCCA	2 cut(s)	135, 365
MscI	TGGCCA	2 cut(s)	135, 365
MseI	TTAA	3 cut(s)	281, 578, 630
MslI	CAYNNNNRTG	1 cut(s)	623
Msp20I	TGGCCA	2 cut(s)	135, 365
MspA1I	CMGCKG	1 cut(s)	202
MspI	CCGG	2 cut(s)	126, 683
MspR9I	CCNGG	2 cut(s)	112, 387
MvaI	CCWGG	2 cut(s)	112, 387
MwoI	GCNNNNNNNGC	6 cut(s)	116, 146, 205, 214, 580, 589
NdeII	GATC	8 cut(s)	28, 85, 94, 304, 340, 560, 615, 727
NheI	GCTAGC	1 cut(s)	208
NlaIII	CATG	1 cut(s)	639
NlaIV	GGNNCC	2 cut(s)	461, 573
NmuCI	GTSAC	1 cut(s)	649
NspV	TTCGAA	1 cut(s)	543
PcsI	WCGNNNNNNNCGW	5 cut(s)	171, 221, 324, 376, 519
PfeI	GAWTC	3 cut(s)	194, 393, 515
Pfl23II	CGTACG	1 cut(s)	519
PflFI	GACNNNGTC	1 cut(s)	446
PkrI	GCNGC	4 cut(s)	121, 142, 201, 477
PleI	GAGTC	2 cut(s)	366, 438
PpsI	GAGTC	2 cut(s)	366, 438
PshBI	ATTAAT	1 cut(s)	281
Psp6I	CCWGG	2 cut(s)	110, 385
PspGI	CCWGG	2 cut(s)	110, 385
PspLI	CGTACG	1 cut(s)	519
PspN4I	GGNNCC	2 cut(s)	461, 573
PsuI	RGATCY	1 cut(s)	304
PsyI	GACNNNGTC	1 cut(s)	446
PvuII	CAGCTG	1 cut(s)	202
RsaI	GTAC	3 cut(s)	330, 497, 521
RsaNI	GTAC	3 cut(s)	329, 496, 520
RseI	CAYNNNNRTG	1 cut(s)	623
SaqAI	TTAA	3 cut(s)	281, 578, 630
SatI	GCNGC	4 cut(s)	120, 141, 200, 476
Sau3AI	GATC	8 cut(s)	28, 85, 94, 304, 340, 560, 615, 727
SchI	GAGTC	2 cut(s)	366, 439
ScrFI	CCNGG	2 cut(s)	112, 387
SfaNI	GCATC	2 cut(s)	106, 579
SfuI	TTCGAA	1 cut(s)	543
SmiMI	CAYNNNNRTG	1 cut(s)	623
Sse9I	AATT	3 cut(s)	52, 232, 278
SsiI	CCGC	2 cut(s)	390, 711
SspMI	CTAG	3 cut(s)	209, 272, 348
StyD4I	CCNGG	2 cut(s)	110, 385
StyI	CCWWGG	2 cut(s)	322, 347
TaaI	ACNGT	2 cut(s)	104, 316
TaiI	ACGT	4 cut(s)	189, 254, 423, 605
TaqI	TCGA	6 cut(s)	74, 339, 441, 513, 543, 672
TaqII	GACCGA	1 cut(s)	275
TasI	AATT	3 cut(s)	52, 232, 278
TfiI	GAWTC	3 cut(s)	194, 393, 515
Tru1I	TTAA	3 cut(s)	281, 578, 630
Tru9I	TTAA	3 cut(s)	281, 578, 630
TscAI	CASTG	3 cut(s)	306, 338, 366
TseFI	GTSAC	1 cut(s)	649
TseI	GCWGC	4 cut(s)	119, 140, 199, 475
Tsp45I	GTSAC	1 cut(s)	649
TspGWI	ACGGA	4 cut(s)	197, 368, 483, 730
TspRI	CASTG	3 cut(s)	306, 338, 366
Tth111I	GACNNNGTC	1 cut(s)	446
VspI	ATTAAT	1 cut(s)	281
XmaJI	CCTAGG	1 cut(s)	347
XspI	CTAG	3 cut(s)	209, 272, 348
ZraI	GACGTC	3 cut(s)	252, 421, 603

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.