Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0001059

Physical Location & Seq

Genomic Coordinates Reverse (-)

30834089 .. 30835175

Gene Structure 1087 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1242800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGGCAGGTTTATTCGACAAGCAGGCAGAGCTTTACTTGGAAGCAAGGCCAACTTATCCCAAGGAATGGTTTTCCATGCTGGCCGCTCTCACACCAAATCACTCCTTAGCTTGGGATGTCGGCACTGGCAATGGCCAAGCTGCTTTCTCTCTTGGAGAGCATTATGAGCAAGTAATAGGAAGTGATATAAGTGAGTCCCAATTGAAGCTGGCACTCCAACATCCTCGAGTTCGTTACGTTCACACTCCAATGACCATGTCTGACGACGATTTGGTTGAGTTAATAGGGGGTGAAGACTCAGTTGATTTGGTGACCGTGGCAGTGGCCGTGCACTGGTTCGACCTCCCAAAGTTCTACTCGGTCGTCAAGCGCGTTTTGCGTAAGCCAGGAGGCATAATTGCAGTTTGGAGCTACAATGCCATCGTGACAGACCCCGAACATGACGATTTATTGAAGCATTTTCGTGAAGCAAGTAAACCCTTTTGGGACCCGAAGACGGAGTACGTGTGGGAAGGGTATAGGACACTTCCATTTCCATTTGAAAGTGTCGGTTTGGGTTCTGAAGGTCAGCCTGTGCCACTGGAAATGCCAATGGAGATGTCATTTGAAGGGGTGATGAGGATGTTCAGGTCATCCTCTGCATTCAATAAAGCTAAAGATCAAGGTGTGGATTTGTTATCACAAGAGGTGATTGAAAACCTTCAAAGAGCTTGGGGTGACCCTAACTTGGTCAGAAAAGTTACTGCCAAGGTATTTATGCTTGCCGGAAAAGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_11

Protein Analysis

259

Amino Acids

29.07

Weight (kDa)

5.19

Isoelectric Point (pI)

33.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltransf_11	PF08241	39 - 134	9.6e-12	Methyltransferase domain
Methyltransf_25	PF13649	39 - 130	3.9e-10	Methyltransferase domain
Methyltransf_31	PF13847	39 - 158	7.8e-09	Methyltransferase domain
Methyltransf_12	PF08242	39 - 132	5.5e-08	Methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001059)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G22530 AT4G22530 AT5G10830
fragaria_vesca	FvH4_5g02050 FvH4_5g34810 FvH4_5g34810
malus_domestica	MD01G1117600.v1.1 MD01G1117900.v1.1 MD07G1186100.v1.1 MD08G1242500.v1.1 MD08G1242800.v1.1
prunus_persica	Prupe.1G580000_v2.0.a1 Prupe.1G580100_v2.0.a1 Prupe.4G160700_v2.0.a1
pyrus_communis	pycom01g14530 pycom08g21040 pycom15g38510
rosa_chinensis	RchiOBHm_Chr1g0334721 RchiOBHm_Chr7g0198261 RchiOBHm_Chr7g0235451 RchiOBHm_Chr7g0235491
rosa_laevigata	RLG00000001155 RLG00000001156 RLG00000003879 RLG00000029427 RLG00000029428 RLG00000029430
rosa_multiflora	Rmu_co8155022.1_g000001 Rmu_co8423201.1_g000001 Rmu_sc0000574.1_g000002 Rmu_sc0002892.1_g000013 Rmu_sc0002892.1_g000015 Rmu_sc0004498.1_g000005 Rmu_sc0004498.1_g000007 Rmu_sc0006031.1_g000022
rosa_roxburghii	Rroxscaffold_3G00225960 Rroxscaffold_3G00225980 Rroxscaffold_4G00316640
rosa_rugosa	Rorug01G0115200 Rorug01G0115300 Rorug07G0046400 Rorug07G0290900 Rorug07G0291000 Rorug07G0291100 Rorug07G0291200
rosa_samantha	Rh1BG107500 Rh1CG132300 Rh1DG144400 Rh7AG169900 Rh7AG446300 Rh7BG173100 Rh7BG418000 Rh7DG172300 Rh7DG434700 Rh7DG434800
rosa_wichuraiana	Rw1G011580 Rw7G014880 Rw7G037030 Rw7G037040 Rw7G037050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	66
AccBSI	CCGCTC	1 cut(s)	86
AccII	CGCG	1 cut(s)	372
AciI	CCGC	1 cut(s)	84
AcoI	YGGCCR	3 cut(s)	81, 133, 324
AcuI	CTGAAG	1 cut(s)	582
AfaI	GTAC	1 cut(s)	503
AfiI	CCNNNNNNNGG	5 cut(s)	66, 111, 333, 496, 727
AflIII	ACRYGT	1 cut(s)	504
AgsI	TTSAA	7 cut(s)	205, 454, 542, 608, 646, 695, 704
AjnI	CCWGG	1 cut(s)	385
AluBI	AGCT	7 cut(s)	31, 110, 140, 208, 411, 653, 710
AluI	AGCT	7 cut(s)	31, 110, 140, 208, 411, 653, 710
Alw21I	GWGCWC	1 cut(s)	333
Alw44I	GTGCAC	1 cut(s)	329
Ama87I	CYCGRG	1 cut(s)	225
AoxI	GGCC	4 cut(s)	47, 81, 133, 324
ApaLI	GTGCAC	1 cut(s)	329
ApeKI	GCWGC	1 cut(s)	140
Asp700I	GAANNNNTTC	1 cut(s)	699
AspLEI	GCGC	1 cut(s)	372
AspS9I	GGNCC	1 cut(s)	487
AsuHPI	GGTGA	5 cut(s)	302, 322, 625, 700, 728
AvaI	CYCGRG	1 cut(s)	225
AvaII	GGWCC	1 cut(s)	487
BaeGI	GKGCMC	1 cut(s)	333
BalI	TGGCCA	1 cut(s)	135
BarI	GAAGNNNNNNTAC	2 cut(s)	485, 517
BbsI	GAAGAC	2 cut(s)	300, 500
Bbv12I	GWGCWC	1 cut(s)	333
BbvI	GCAGC	1 cut(s)	127
BccI	CCATC	1 cut(s)	428
BceAI	ACGGC	1 cut(s)	311
BciT130I	CCWGG	1 cut(s)	387
BisI	GCNGC	2 cut(s)	84, 141
BlsI	GCNGC	2 cut(s)	85, 142
Bme1390I	CCNGG	1 cut(s)	387
Bme18I	GGWCC	1 cut(s)	487
BmeT110I	CYCGRG	1 cut(s)	225
BmgT120I	GGNCC	1 cut(s)	487
BmiI	GGNNCC	2 cut(s)	488, 489
BmrFI	CCNGG	1 cut(s)	387
BpiI	GAAGAC	2 cut(s)	300, 500
Bpu10I	CCTNAGC	1 cut(s)	106
BsaAI	YACGTR	1 cut(s)	505
BsaJI	CCNNGG	3 cut(s)	60, 315, 747
BsaXI	ACNNNNNCTCC	2 cut(s)	491, 521
Bsc4I	CCNNNNNNNGG	5 cut(s)	66, 111, 333, 496, 727
Bse1I	ACTGG	3 cut(s)	130, 338, 585
Bse3DI	GCAATG	1 cut(s)	136
BseBI	CCWGG	1 cut(s)	387
BseDI	CCNNGG	3 cut(s)	60, 315, 747
BseGI	GGATG	4 cut(s)	121, 220, 627, 632
BseLI	CCNNNNNNNGG	5 cut(s)	66, 111, 333, 496, 727
BseMI	GCAATG	1 cut(s)	136
BseMII	CTCAG	1 cut(s)	312
BseNI	ACTGG	3 cut(s)	130, 338, 585
BseSI	GKGCMC	1 cut(s)	333
BseXI	GCAGC	1 cut(s)	127
Bsh1236I	CGCG	1 cut(s)	372
Bsh1285I	CGRYCG	1 cut(s)	363
BshFI	GGCC	4 cut(s)	49, 83, 135, 326
BsiEI	CGRYCG	1 cut(s)	363
BsiHKAI	GWGCWC	1 cut(s)	333
BsiHKCI	CYCGRG	1 cut(s)	225
BsiSI	CCGG	1 cut(s)	765
BslFI	GGGAC	2 cut(s)	181, 500
BslI	CCNNNNNNNGG	5 cut(s)	66, 111, 333, 496, 727
BsmFI	GGGAC	2 cut(s)	181, 500
BsmI	GAATGC	1 cut(s)	641
BsnI	GGCC	4 cut(s)	49, 83, 135, 326
BsoBI	CYCGRG	1 cut(s)	225
Bsp1286I	GDGCHC	1 cut(s)	333
Bsp143I	GATC	1 cut(s)	658
BspACI	CCGC	1 cut(s)	84
BspANI	GGCC	4 cut(s)	49, 83, 135, 326
BspCNI	CTCAG	1 cut(s)	311
BspFNI	CGCG	1 cut(s)	372
BspLI	GGNNCC	2 cut(s)	488, 489
BsrBI	CCGCTC	1 cut(s)	86
BsrDI	GCAATG	1 cut(s)	136
BsrI	ACTGG	3 cut(s)	130, 338, 585
BssECI	CCNNGG	3 cut(s)	60, 315, 747
BssMI	GATC	1 cut(s)	658
BssT1I	CCWWGG	2 cut(s)	60, 747
Bst2UI	CCWGG	1 cut(s)	387
Bst4CI	ACNGT	1 cut(s)	316
BstBAI	YACGTR	1 cut(s)	505
BstC8I	GCNNGC	4 cut(s)	24, 81, 210, 762
BstDEI	CTNAG	2 cut(s)	106, 298
BstDSI	CCRYGG	1 cut(s)	315
BstEII	GGTNACC	2 cut(s)	310, 716
BstF5I	GGATG	4 cut(s)	121, 220, 627, 632
BstFNI	CGCG	1 cut(s)	372
BstHHI	GCGC	1 cut(s)	372
BstKTI	GATC	1 cut(s)	661
BstMBI	GATC	1 cut(s)	658
BstMCI	CGRYCG	1 cut(s)	363
BstMWI	GCNNNNNNNGC	3 cut(s)	28, 166, 376
BstNI	CCWGG	1 cut(s)	387
BstPI	GGTNACC	2 cut(s)	310, 716
BstSCI	CCNGG	1 cut(s)	385
BstSLI	GKGCMC	1 cut(s)	333
BstUI	CGCG	1 cut(s)	372
BstV1I	GCAGC	1 cut(s)	127
BstV2I	GAAGAC	2 cut(s)	300, 500
BsuRI	GGCC	4 cut(s)	49, 83, 135, 326
BtgI	CCRYGG	1 cut(s)	315
BtsCI	GGATG	4 cut(s)	121, 220, 627, 632
BtsI	GCAGTG	1 cut(s)	327
BtsIMutI	CAGTG	4 cut(s)	123, 327, 331, 578
Cac8I	GCNNGC	4 cut(s)	24, 81, 210, 762
CfoI	GCGC	1 cut(s)	372
Cfr13I	GGNCC	1 cut(s)	487
Csp6I	GTAC	1 cut(s)	502
CviAII	CATG	3 cut(s)	76, 256, 440
CviQI	GTAC	1 cut(s)	502
DdeI	CTNAG	2 cut(s)	106, 298
DpnI	GATC	1 cut(s)	660
DpnII	GATC	1 cut(s)	658
EaeI	YGGCCR	3 cut(s)	81, 133, 324
Eco130I	CCWWGG	2 cut(s)	60, 747
Eco47I	GGWCC	1 cut(s)	487
Eco57I	CTGAAG	1 cut(s)	582
Eco88I	CYCGRG	1 cut(s)	225
Eco91I	GGTNACC	2 cut(s)	310, 716
EcoO109I	RGGNCCY	1 cut(s)	487
EcoO65I	GGTNACC	2 cut(s)	310, 716
EcoRII	CCWGG	1 cut(s)	385
EcoT14I	CCWWGG	2 cut(s)	60, 747
ErhI	CCWWGG	2 cut(s)	60, 747
FaeI	CATG	3 cut(s)	79, 259, 443
FaiI	YATR	8 cut(s)	77, 165, 188, 257, 395, 441, 519, 758
FalI	AAGNNNNNCTT	2 cut(s)	37, 69
FaqI	GGGAC	2 cut(s)	181, 500
FatI	CATG	3 cut(s)	75, 255, 439
Fnu4HI	GCNGC	2 cut(s)	84, 141
FokI	GGATG	4 cut(s)	128, 207, 619, 634
Fsp4HI	GCNGC	2 cut(s)	84, 141
GlaI	GCGC	1 cut(s)	371
GluI	GCNGC	2 cut(s)	84, 141
HaeIII	GGCC	4 cut(s)	49, 83, 135, 326
HapII	CCGG	1 cut(s)	765
HhaI	GCGC	1 cut(s)	372
Hin1II	CATG	3 cut(s)	79, 259, 443
Hin6I	GCGC	1 cut(s)	370
HinP1I	GCGC	1 cut(s)	370
HinfI	GANTC	2 cut(s)	194, 296
HpaII	CCGG	1 cut(s)	765
HphI	GGTGA	5 cut(s)	302, 322, 625, 700, 728
Hpy166II	GTNNAC	3 cut(s)	241, 331, 476
Hpy188I	TCNGA	3 cut(s)	262, 562, 734
Hpy188III	TCNNGA	2 cut(s)	424, 464
Hpy8I	GTNNAC	3 cut(s)	241, 331, 476
Hpy99I	CGWCG	1 cut(s)	269
HpyAV	CCTTC	4 cut(s)	506, 557, 602, 710
HpyCH4III	ACNGT	1 cut(s)	316
HpyCH4IV	ACGT	2 cut(s)	237, 504
HpyCH4V	TGCA	3 cut(s)	331, 401, 641
HpyF10VI	GCNNNNNNNGC	3 cut(s)	28, 166, 376
HpyF3I	CTNAG	2 cut(s)	106, 298
HpySE526I	ACGT	2 cut(s)	237, 504
Hsp92II	CATG	3 cut(s)	79, 259, 443
HspAI	GCGC	1 cut(s)	370
KflI	GGGWCCC	1 cut(s)	487
Kzo9I	GATC	1 cut(s)	658
LmnI	GCTCC	1 cut(s)	408
Lsp1109I	GCAGC	1 cut(s)	127
MaeII	ACGT	2 cut(s)	237, 504
MaeIII	GTNAC	5 cut(s)	233, 310, 424, 716, 739
MalI	GATC	1 cut(s)	660
MbiI	CCGCTC	1 cut(s)	86
MboI	GATC	1 cut(s)	658
MboII	GAAGA	2 cut(s)	305, 505
MfeI	CAATTG	1 cut(s)	200
MhlI	GDGCHC	1 cut(s)	333
MlsI	TGGCCA	1 cut(s)	135
MluCI	AATT	2 cut(s)	200, 396
MluNI	TGGCCA	1 cut(s)	135
MlyI	GAGTC	2 cut(s)	203, 290
MmeI	TCCRAC	1 cut(s)	241
MnlI	CCTC	6 cut(s)	234, 353, 383, 612, 646, 679
Mox20I	TGGCCA	1 cut(s)	135
MroXI	GAANNNNTTC	1 cut(s)	699
MscI	TGGCCA	1 cut(s)	135
MseI	TTAA	1 cut(s)	281
MslI	CAYNNNNRTG	2 cut(s)	248, 462
Msp20I	TGGCCA	1 cut(s)	135
MspI	CCGG	1 cut(s)	765
MspR9I	CCNGG	1 cut(s)	387
MunI	CAATTG	1 cut(s)	200
Mva1269I	GAATGC	1 cut(s)	641
MvaI	CCWGG	1 cut(s)	387
MvnI	CGCG	1 cut(s)	372
MwoI	GCNNNNNNNGC	3 cut(s)	28, 166, 376
NdeII	GATC	1 cut(s)	658
NlaIII	CATG	3 cut(s)	79, 259, 443
NlaIV	GGNNCC	2 cut(s)	488, 489
NmuCI	GTSAC	3 cut(s)	310, 424, 716
PaeR7I	CTCGAG	1 cut(s)	225
PcsI	WCGNNNNNNNCGW	1 cut(s)	369
PctI	GAATGC	1 cut(s)	641
PdmI	GAANNNNTTC	1 cut(s)	699
PflFI	GACNNNGTC	1 cut(s)	256
PflMI	CCANNNNNTGG	1 cut(s)	66
PkrI	GCNGC	2 cut(s)	85, 142
PleI	GAGTC	2 cut(s)	202, 290
PpsI	GAGTC	2 cut(s)	202, 290
Ppu21I	YACGTR	1 cut(s)	505
PpuMI	RGGWCCY	1 cut(s)	487
Psp5II	RGGWCCY	1 cut(s)	487
Psp6I	CCWGG	1 cut(s)	385
PspEI	GGTNACC	2 cut(s)	310, 716
PspGI	CCWGG	1 cut(s)	385
PspN4I	GGNNCC	2 cut(s)	488, 489
PspPI	GGNCC	1 cut(s)	487
PspPPI	RGGWCCY	1 cut(s)	487
PspXI	VCTCGAGB	1 cut(s)	225
PsyI	GACNNNGTC	1 cut(s)	256
RsaI	GTAC	1 cut(s)	503
RsaNI	GTAC	1 cut(s)	502
RseI	CAYNNNNRTG	2 cut(s)	248, 462
SaqAI	TTAA	1 cut(s)	281
SatI	GCNGC	2 cut(s)	84, 141
Sau3AI	GATC	1 cut(s)	658
Sau96I	GGNCC	1 cut(s)	487
SchI	GAGTC	2 cut(s)	203, 290
ScrFI	CCNGG	1 cut(s)	387
SduI	GDGCHC	1 cut(s)	333
Sfr274I	CTCGAG	1 cut(s)	225
SinI	GGWCC	1 cut(s)	487
SlaI	CTCGAG	1 cut(s)	225
SmiMI	CAYNNNNRTG	2 cut(s)	248, 462
SmlI	CTYRAG	1 cut(s)	225
SmoI	CTYRAG	1 cut(s)	225
Sse9I	AATT	2 cut(s)	200, 396
SsiI	CCGC	1 cut(s)	84
StyD4I	CCNGG	1 cut(s)	385
StyI	CCWWGG	2 cut(s)	60, 747
TaaI	ACNGT	1 cut(s)	316
TaiI	ACGT	2 cut(s)	240, 507
TaqI	TCGA	3 cut(s)	15, 226, 339
TaqII	GACCGA	1 cut(s)	349
TasI	AATT	2 cut(s)	200, 396
TauI	GCSGC	1 cut(s)	86
Tru1I	TTAA	1 cut(s)	281
Tru9I	TTAA	1 cut(s)	281
TscAI	CASTG	4 cut(s)	130, 327, 338, 585
TseFI	GTSAC	3 cut(s)	310, 424, 716
TseI	GCWGC	1 cut(s)	140
Tsp45I	GTSAC	3 cut(s)	310, 424, 716
TspGWI	ACGGA	1 cut(s)	512
TspRI	CASTG	4 cut(s)	130, 327, 338, 585
Tth111I	GACNNNGTC	1 cut(s)	256
Van91I	CCANNNNNTGG	1 cut(s)	66
VneI	GTGCAC	1 cut(s)	329
VpaK11BI	GGWCC	1 cut(s)	487
XhoI	CTCGAG	1 cut(s)	225
XmnI	GAANNNNTTC	1 cut(s)	699

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.