Rh7AG169900

methyltransferase DDB_G0268948

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0001059
Physical Location & Seq
Reverse (-)
14620983 .. 14623365
2383 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG169900.1

Sequence Viewer

Length: 696 bp
ATGGACCTACATGTCTCTCAACTCATGATGACTCTCTCTATACACGCATGTTTGTATTTACAGCTTTCAGAGCATTACGAGCAAGTAGTGGGAAGCGACATCAGTGGAGAACAATTAAAACACGCCATCCAACATCCTCGAATTCGATACATTCATACTCCAACATCAATCTCAGAGGATGAAATGGTCAACTTAATAGCCGGTGGTCATGAAAATTCAGTGGACTTGGTTACAGTGGCGGAAGCTGTTCACTGGTTTGATCTTCCTCATTTCTATTCACTAGTCAGACGCCTTCTGCGCAAACCAGGAGGCGTAATTGCAGTTTGGGGCTACAATGACATGGTAGTAAGCCCCGATTTTGATCTTTTAATGAAGCGTTACCACGAAAAGATGTTACCATATTATGACCCGAAATCAAGCTACTTATGGGAGGGTTATAGGACACTTCCATTTCCATTTGAGAGTGTTGGATTAGGTCGTGAAGGAGAGCCTATGGCACTTGAAATACATAAGGAACTTTCATTTCAGGGGCTTCTGAGGCTTCTGAGGTCTTCCTCTGCAGTCACTACGGCTAAAGACAAGGGTGTGGATTTGTTGTCTGAAGAGGTGATTGAAGAGATTCAAGGAGTTTGGGGTGGGCCTGATCTGGTTAGATCTGTTACGTACAAGGCTTTTATGCTTGCTGGCAAACTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Methyltransf_11

Protein Analysis

231

Amino Acids

26.23

Weight (kDa)

5.63

Isoelectric Point (pI)

48.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 11
Acc16I TGCGCA 1 cut(s) 299
AciI CCGC 1 cut(s) 239
AcsI RAATTY 2 cut(s) 141, 214
AcuI CTGAAG 1 cut(s) 621
AcyI GRCGYC 1 cut(s) 289
AfaI GTAC 1 cut(s) 665
AflIII ACRYGT 1 cut(s) 10
AgsI TTSAA 3 cut(s) 503, 614, 623
AhlI ACTAGT 1 cut(s) 280
AjnI CCWGG 1 cut(s) 304
AluBI AGCT 3 cut(s) 64, 245, 420
AluI AGCT 3 cut(s) 64, 245, 420
Alw26I GTCTC 1 cut(s) 19
AoxI GGCC 1 cut(s) 638
ApoI RAATTY 2 cut(s) 141, 214
Asp700I GAANNNNTTC 2 cut(s) 246, 618
AspLEI GCGC 1 cut(s) 300
AspS9I GGNCC 2 cut(s) 4, 638
AsuHPI GGTGA 1 cut(s) 619
AvaII GGWCC 1 cut(s) 4
BbsI GAAGAC 1 cut(s) 543
BccI CCATC 1 cut(s) 134
BceAI ACGGC 1 cut(s) 585
BciT130I CCWGG 1 cut(s) 306
BcoDI GTCTC 1 cut(s) 19
BcuI ACTAGT 1 cut(s) 280
BfaI CTAG 1 cut(s) 281
BfmI CTRYAG 1 cut(s) 558
BglII AGATCT 1 cut(s) 653
Bme1390I CCNGG 1 cut(s) 306
Bme18I GGWCC 1 cut(s) 4
BmgT120I GGNCC 2 cut(s) 4, 638
BmrFI CCNGG 1 cut(s) 306
BpiI GAAGAC 1 cut(s) 543
BsaAI YACGTR 1 cut(s) 663
BsaBI GATNNNNATC 1 cut(s) 360
BsaHI GRCGYC 1 cut(s) 289
Bse118I RCCGGY 1 cut(s) 200
Bse1I ACTGG 1 cut(s) 257
Bse8I GATNNNNATC 1 cut(s) 360
BseBI CCWGG 1 cut(s) 306
BseGI GGATG 3 cut(s) 126, 133, 184
BseJI GATNNNNATC 1 cut(s) 360
BseMII CTCAG 3 cut(s) 186, 527, 536
BseNI ACTGG 1 cut(s) 257
BshFI GGCC 1 cut(s) 640
BsiSI CCGG 1 cut(s) 201
BsmAI GTCTC 1 cut(s) 19
BsnI GGCC 1 cut(s) 640
Bsp143I GATC 4 cut(s) 259, 361, 643, 653
BspACI CCGC 1 cut(s) 239
BspANI GGCC 1 cut(s) 640
BspCNI CTCAG 3 cut(s) 185, 528, 537
BspHI TCATGA 2 cut(s) 24, 208
BspMAI CTGCAG 1 cut(s) 562
BsrFI RCCGGY 1 cut(s) 200
BsrI ACTGG 1 cut(s) 257
BssAI RCCGGY 1 cut(s) 200
BssMI GATC 4 cut(s) 259, 361, 643, 653
BssNI GRCGYC 1 cut(s) 289
Bst2UI CCWGG 1 cut(s) 306
Bst4CI ACNGT 1 cut(s) 235
Bst6I CTCTTC 2 cut(s) 597, 609
BstACI GRCGYC 1 cut(s) 289
BstBAI YACGTR 1 cut(s) 663
BstC8I GCNNGC 2 cut(s) 681, 685
BstDEI CTNAG 3 cut(s) 172, 536, 545
BstF5I GGATG 3 cut(s) 126, 133, 184
BstHHI GCGC 1 cut(s) 300
BstKTI GATC 4 cut(s) 262, 364, 646, 656
BstMAI GTCTC 1 cut(s) 19
BstMBI GATC 4 cut(s) 259, 361, 643, 653
BstMWI GCNNNNNNNGC 4 cut(s) 70, 79, 297, 538
BstNI CCWGG 1 cut(s) 306
BstNSI RCATGY 2 cut(s) 14, 51
BstSCI CCNGG 1 cut(s) 304
BstSFI CTRYAG 1 cut(s) 558
BstSNI TACGTA 1 cut(s) 663
BstV2I GAAGAC 1 cut(s) 543
BstX2I RGATCY 1 cut(s) 653
BstYI RGATCY 1 cut(s) 653
BsuRI GGCC 1 cut(s) 640
BtsCI GGATG 3 cut(s) 126, 133, 184
BtsIMutI CAGTG 4 cut(s) 109, 225, 240, 250
Cac8I GCNNGC 2 cut(s) 681, 685
CciI TCATGA 2 cut(s) 24, 208
CfoI GCGC 1 cut(s) 300
Cfr10I RCCGGY 1 cut(s) 200
Cfr13I GGNCC 2 cut(s) 4, 638
CseI GACGC 1 cut(s) 297
Csp6I GTAC 1 cut(s) 664
CviAII CATG 5 cut(s) 11, 25, 48, 209, 340
CviQI GTAC 1 cut(s) 664
DdeI CTNAG 3 cut(s) 172, 536, 545
DpnI GATC 4 cut(s) 261, 363, 645, 655
DpnII GATC 4 cut(s) 259, 361, 643, 653
DrdI GACNNNNNNGTC 1 cut(s) 11
DseDI GACNNNNNNGTC 1 cut(s) 11
Eam1104I CTCTTC 2 cut(s) 597, 609
EarI CTCTTC 2 cut(s) 597, 609
EciI GGCGGA 1 cut(s) 254
Eco105I TACGTA 1 cut(s) 663
Eco47I GGWCC 1 cut(s) 4
Eco57I CTGAAG 1 cut(s) 621
EcoRI GAATTC 1 cut(s) 141
EcoRII CCWGG 1 cut(s) 304
FaeI CATG 5 cut(s) 14, 28, 51, 212, 343
FatI CATG 5 cut(s) 10, 24, 47, 208, 339
FokI GGATG 3 cut(s) 113, 120, 191
FspBI CTAG 1 cut(s) 281
FspI TGCGCA 1 cut(s) 299
GlaI GCGC 1 cut(s) 299
HaeIII GGCC 1 cut(s) 640
HapII CCGG 1 cut(s) 201
HgaI GACGC 1 cut(s) 297
HhaI GCGC 1 cut(s) 300
Hin1I GRCGYC 1 cut(s) 289
Hin1II CATG 5 cut(s) 14, 28, 51, 212, 343
Hin6I GCGC 1 cut(s) 298
HinP1I GCGC 1 cut(s) 298
HincII GTYRAC 1 cut(s) 190
HindII GTYRAC 1 cut(s) 190
HinfI GANTC 2 cut(s) 31, 619
HpaII CCGG 1 cut(s) 201
HphI GGTGA 1 cut(s) 619
Hpy166II GTNNAC 3 cut(s) 190, 223, 250
Hpy188I TCNGA 6 cut(s) 70, 175, 287, 537, 546, 601
Hpy188III TCNNGA 3 cut(s) 25, 209, 479
Hpy8I GTNNAC 3 cut(s) 190, 223, 250
HpyAV CCTTC 2 cut(s) 302, 476
HpyCH4III ACNGT 1 cut(s) 235
HpyCH4IV ACGT 1 cut(s) 662
HpyCH4V TGCA 2 cut(s) 320, 560
HpyF10VI GCNNNNNNNGC 4 cut(s) 70, 79, 297, 538
HpyF3I CTNAG 3 cut(s) 172, 536, 545
HpySE526I ACGT 1 cut(s) 662
Hsp92I GRCGYC 1 cut(s) 289
Hsp92II CATG 5 cut(s) 14, 28, 51, 212, 343
HspAI GCGC 1 cut(s) 298
Kzo9I GATC 4 cut(s) 259, 361, 643, 653
LpnPI CCDG 8 cut(s) 214, 238, 291, 318, 512, 632, 654, 669
MaeI CTAG 1 cut(s) 281
MaeII ACGT 1 cut(s) 662
MaeIII GTNAC 5 cut(s) 229, 377, 393, 562, 658
MalI GATC 4 cut(s) 261, 363, 645, 655
MboI GATC 4 cut(s) 259, 361, 643, 653
MboII GAAGA 4 cut(s) 254, 543, 614, 626
MflI RGATCY 1 cut(s) 653
MluCI AATT 4 cut(s) 113, 141, 214, 315
MlyI GAGTC 1 cut(s) 25
MmeI TCCRAC 3 cut(s) 154, 185, 448
MnlI CCTC 9 cut(s) 147, 169, 276, 302, 424, 531, 540, 565, 598
MroXI GAANNNNTTC 2 cut(s) 246, 618
MseI TTAA 3 cut(s) 116, 194, 368
MspI CCGG 1 cut(s) 201
MspR9I CCNGG 1 cut(s) 306
MvaI CCWGG 1 cut(s) 306
MwoI GCNNNNNNNGC 4 cut(s) 70, 79, 297, 538
NdeII GATC 4 cut(s) 259, 361, 643, 653
NlaIII CATG 5 cut(s) 14, 28, 51, 212, 343
NmuCI GTSAC 1 cut(s) 562
NsbI TGCGCA 1 cut(s) 299
NspI RCATGY 2 cut(s) 14, 51
PagI TCATGA 2 cut(s) 24, 208
PciI ACATGT 1 cut(s) 10
PdmI GAANNNNTTC 2 cut(s) 246, 618
PfeI GAWTC 1 cut(s) 619
PleI GAGTC 1 cut(s) 25
PpsI GAGTC 1 cut(s) 25
Ppu21I YACGTR 1 cut(s) 663
PscI ACATGT 1 cut(s) 10
Psp6I CCWGG 1 cut(s) 304
PspGI CCWGG 1 cut(s) 304
PspPI GGNCC 2 cut(s) 4, 638
PstI CTGCAG 1 cut(s) 562
PsuI RGATCY 1 cut(s) 653
RsaI GTAC 1 cut(s) 665
RsaNI GTAC 1 cut(s) 664
SaqAI TTAA 3 cut(s) 116, 194, 368
Sau3AI GATC 4 cut(s) 259, 361, 643, 653
Sau96I GGNCC 2 cut(s) 4, 638
SchI GAGTC 1 cut(s) 25
ScrFI CCNGG 1 cut(s) 306
SetI ASST 8 cut(s) 9, 66, 247, 422, 478, 551, 609, 665
SfcI CTRYAG 1 cut(s) 558
SinI GGWCC 1 cut(s) 4
SnaBI TACGTA 1 cut(s) 663
SpeI ACTAGT 1 cut(s) 280
Sse9I AATT 4 cut(s) 113, 141, 214, 315
SsiI CCGC 1 cut(s) 239
SspMI CTAG 1 cut(s) 281
StyD4I CCNGG 1 cut(s) 304
TaaI ACNGT 1 cut(s) 235
TaiI ACGT 1 cut(s) 665
TaqI TCGA 2 cut(s) 139, 145
TasI AATT 4 cut(s) 113, 141, 214, 315
TfiI GAWTC 1 cut(s) 619
Tru1I TTAA 3 cut(s) 116, 194, 368
Tru9I TTAA 3 cut(s) 116, 194, 368
TscAI CASTG 4 cut(s) 109, 225, 240, 257
TseFI GTSAC 1 cut(s) 562
Tsp45I GTSAC 1 cut(s) 562
TspDTI ATGAA 5 cut(s) 143, 195, 225, 386, 510
TspRI CASTG 4 cut(s) 109, 225, 240, 257
VpaK11BI GGWCC 1 cut(s) 4
XapI RAATTY 2 cut(s) 141, 214
XceI RCATGY 2 cut(s) 14, 51
XmnI GAANNNNTTC 2 cut(s) 246, 618
XspI CTAG 1 cut(s) 281
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.