Prupe.4G160700_v2.0.a1

methyltransferase DDB_G0268948

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0001059
Physical Location & Seq
Forward (+)
9219606 .. 9222019
2414 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G160700.1

Sequence Viewer

Length: 786 bp
ATGGCAGGTTTGTTTGACAAGCAAGCAGAGGTGTACTTGGATGGAAGGCCAACTTATCCCAAGGAATGGTATTCCAAGTTAGCAGCTCTCACCCCTCACCACACTCTGGCCTGGGATGTTGGAACAGGCAATGGCCAAGCCGCCATAAGTGTTGCCGAGCACTATGAACTAGTGATCGGAACCGATGTGAGTGAATCCCAGCTGCAGCATGCAATACCGCATCCTCGGGTTCGATATGCCCACACGGCATTGAACATTACAGACGAGGAAGTAATAGCCTTGTTAGGTGGTGAAGATTCAGTTGACTTGGTGACTGTGGCTACAGCTGTGCACTGGTTCGACCTACCAAAGTTTTACAATCTTGTTTCACGTCTTTTGAAAAAGCCAGGAGGTGTATTGGCTGTTTGGACTTACAGTGGCATTGAAGTAAGTCCAACATTTGATCCTGTTATGAAGCGATTTCATGACACAACACTTCCCTTTCAGGACAATAGAGCTCAGTATGCGTTTGATGGCTATAAGACACTTCCATTTCCTTTTCAAAGTCTTACGGGTTTCGGATGCGAAGGGAACCCGTTGCCACTGGCCGTTCCAGCGAAGCTGTCATTTGAAGGGGTTTTGAAGTTTCTGAAGTCATGGTCTGCAGTCACTACAGCCAAGGACCAAGGTGTGGATTTGTTACCTGAAAAGGTGGTTAAAGAGTTTGAAGCTGCTTGGGGTGATTCTAAATTGGTCAAGTCTGTCAGCTACAAGGCTTTTATGCTTGCTGGAAAAGTTAGGCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0008152 GO:0008168 GO:0008757 GO:0016740 GO:0016741 GO:0032259 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Methyltransf_11

Protein Analysis

262

Amino Acids

28.83

Weight (kDa)

6.06

Isoelectric Point (pI)

31.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 3 cut(s) 66, 106, 670
AciI CCGC 2 cut(s) 141, 218
AclWI GGATC 1 cut(s) 437
AcoI YGGCCR 2 cut(s) 133, 585
AcuI CTGAAG 1 cut(s) 650
AfaI GTAC 1 cut(s) 35
AfiI CCNNNNNNNGG 3 cut(s) 66, 106, 670
AgsI TTSAA 7 cut(s) 253, 379, 425, 542, 611, 622, 707
AhlI ACTAGT 1 cut(s) 169
AjiI CACGTC 1 cut(s) 371
AjnI CCWGG 2 cut(s) 110, 385
AluBI AGCT 7 cut(s) 86, 202, 326, 497, 601, 710, 747
AluI AGCT 7 cut(s) 86, 202, 326, 497, 601, 710, 747
Alw21I GWGCWC 3 cut(s) 162, 333, 499
Alw44I GTGCAC 1 cut(s) 329
AlwI GGATC 1 cut(s) 437
Ama87I CYCGRG 1 cut(s) 225
AoxI GGCC 4 cut(s) 47, 108, 133, 585
ApaLI GTGCAC 1 cut(s) 329
ApeKI GCWGC 4 cut(s) 83, 202, 205, 710
AspS9I GGNCC 1 cut(s) 661
AsuHPI GGTGA 5 cut(s) 82, 89, 302, 322, 731
AvaI CYCGRG 1 cut(s) 225
AvaII GGWCC 1 cut(s) 661
BaeGI GKGCMC 1 cut(s) 333
BalI TGGCCA 1 cut(s) 135
BanII GRGCYC 1 cut(s) 499
Bbv12I GWGCWC 3 cut(s) 162, 333, 499
BbvI GCAGC 4 cut(s) 95, 189, 217, 697
BccI CCATC 2 cut(s) 35, 506
BceAI ACGGC 2 cut(s) 261, 572
BciT130I CCWGG 2 cut(s) 112, 387
BcuI ACTAGT 1 cut(s) 169
BfaI CTAG 1 cut(s) 170
BfmI CTRYAG 4 cut(s) 203, 321, 642, 651
BglI GCCNNNNNGGC 1 cut(s) 245
BisI GCNGC 5 cut(s) 84, 141, 203, 206, 711
BlsI GCNGC 5 cut(s) 85, 142, 204, 207, 712
Bme1390I CCNGG 2 cut(s) 112, 387
Bme18I GGWCC 1 cut(s) 661
BmeT110I CYCGRG 1 cut(s) 225
BmgBI CACGTC 1 cut(s) 371
BmgT120I GGNCC 1 cut(s) 661
BmiI GGNNCC 2 cut(s) 181, 572
BmrFI CCNGG 2 cut(s) 112, 387
BmsI GCATC 2 cut(s) 229, 551
BsaJI CCNNGG 5 cut(s) 60, 111, 224, 657, 664
Bsc4I CCNNNNNNNGG 3 cut(s) 66, 106, 670
Bse1I ACTGG 2 cut(s) 338, 588
Bse3DI GCAATG 1 cut(s) 136
BseBI CCWGG 2 cut(s) 112, 387
BseDI CCNNGG 5 cut(s) 60, 111, 224, 657, 664
BseGI GGATG 4 cut(s) 46, 121, 220, 566
BseLI CCNNNNNNNGG 3 cut(s) 66, 106, 670
BseMI GCAATG 1 cut(s) 136
BseMII CTCAG 1 cut(s) 512
BseNI ACTGG 2 cut(s) 338, 588
BseSI GKGCMC 1 cut(s) 333
BseXI GCAGC 4 cut(s) 95, 189, 217, 697
BseYI CCCAGC 1 cut(s) 198
BshFI GGCC 4 cut(s) 49, 110, 135, 587
BsiHKAI GWGCWC 3 cut(s) 162, 333, 499
BsiHKCI CYCGRG 1 cut(s) 225
BslI CCNNNNNNNGG 3 cut(s) 66, 106, 670
BsnI GGCC 4 cut(s) 49, 110, 135, 587
BsoBI CYCGRG 1 cut(s) 225
Bsp1286I GDGCHC 3 cut(s) 162, 333, 499
Bsp143I GATC 2 cut(s) 174, 442
BspACI CCGC 2 cut(s) 141, 218
BspANI GGCC 4 cut(s) 49, 110, 135, 587
BspCNI CTCAG 1 cut(s) 511
BspHI TCATGA 1 cut(s) 463
BspLI GGNNCC 2 cut(s) 181, 572
BspMAI CTGCAG 2 cut(s) 207, 646
BspPI GGATC 1 cut(s) 437
BsrDI GCAATG 1 cut(s) 136
BsrI ACTGG 2 cut(s) 338, 588
BssECI CCNNGG 5 cut(s) 60, 111, 224, 657, 664
BssMI GATC 2 cut(s) 174, 442
BssT1I CCWWGG 3 cut(s) 60, 657, 664
Bst2UI CCWGG 2 cut(s) 112, 387
Bst4CI ACNGT 2 cut(s) 316, 416
BstC8I GCNNGC 3 cut(s) 24, 210, 765
BstDEI CTNAG 1 cut(s) 498
BstF5I GGATG 4 cut(s) 46, 121, 220, 566
BstKTI GATC 2 cut(s) 177, 445
BstMBI GATC 2 cut(s) 174, 442
BstMWI GCNNNNNNNGC 3 cut(s) 245, 503, 593
BstNI CCWGG 2 cut(s) 112, 387
BstNSI RCATGY 1 cut(s) 212
BstSCI CCNGG 2 cut(s) 110, 385
BstSFI CTRYAG 4 cut(s) 203, 321, 642, 651
BstSLI GKGCMC 1 cut(s) 333
BstV1I GCAGC 4 cut(s) 95, 189, 217, 697
BsuRI GGCC 4 cut(s) 49, 110, 135, 587
BtrI CACGTC 1 cut(s) 371
BtsCI GGATG 4 cut(s) 46, 121, 220, 566
BtsIMutI CAGTG 3 cut(s) 331, 421, 581
Cac8I GCNNGC 3 cut(s) 24, 210, 765
CciI TCATGA 1 cut(s) 463
Cfr13I GGNCC 1 cut(s) 661
Csp6I GTAC 1 cut(s) 34
CviAII CATG 3 cut(s) 209, 464, 636
CviQI GTAC 1 cut(s) 34
DdeI CTNAG 1 cut(s) 498
DpnI GATC 2 cut(s) 176, 444
DpnII GATC 2 cut(s) 174, 442
EaeI YGGCCR 2 cut(s) 133, 585
Ecl136II GAGCTC 1 cut(s) 497
Eco130I CCWWGG 3 cut(s) 60, 657, 664
Eco24I GRGCYC 1 cut(s) 499
Eco47I GGWCC 1 cut(s) 661
Eco53kI GAGCTC 1 cut(s) 497
Eco57I CTGAAG 1 cut(s) 650
Eco88I CYCGRG 1 cut(s) 225
EcoICRI GAGCTC 1 cut(s) 497
EcoRII CCWGG 2 cut(s) 110, 385
EcoT14I CCWWGG 3 cut(s) 60, 657, 664
EcoT38I GRGCYC 1 cut(s) 499
ErhI CCWWGG 3 cut(s) 60, 657, 664
FaeI CATG 3 cut(s) 212, 467, 639
FalI AAGNNNNNCTT 3 cut(s) 37, 69, 765
FatI CATG 3 cut(s) 208, 463, 635
Fnu4HI GCNGC 5 cut(s) 84, 141, 203, 206, 711
FokI GGATG 4 cut(s) 53, 128, 207, 573
FriOI GRGCYC 1 cut(s) 499
Fsp4HI GCNGC 5 cut(s) 84, 141, 203, 206, 711
FspBI CTAG 1 cut(s) 170
GluI GCNGC 5 cut(s) 84, 141, 203, 206, 711
GsaI CCCAGC 1 cut(s) 202
HaeIII GGCC 4 cut(s) 49, 110, 135, 587
Hin1II CATG 3 cut(s) 212, 467, 639
HincII GTYRAC 1 cut(s) 304
HindII GTYRAC 1 cut(s) 304
HinfI GANTC 3 cut(s) 194, 296, 722
HphI GGTGA 5 cut(s) 82, 89, 302, 322, 731
Hpy166II GTNNAC 3 cut(s) 34, 304, 331
Hpy188I TCNGA 3 cut(s) 179, 560, 630
Hpy188III TCNNGA 2 cut(s) 464, 485
Hpy8I GTNNAC 3 cut(s) 34, 304, 331
HpyAV CCTTC 3 cut(s) 39, 560, 605
HpyCH4III ACNGT 2 cut(s) 316, 416
HpyCH4IV ACGT 1 cut(s) 370
HpyCH4V TGCA 4 cut(s) 205, 212, 331, 644
HpyF10VI GCNNNNNNNGC 3 cut(s) 245, 503, 593
HpyF3I CTNAG 1 cut(s) 498
HpySE526I ACGT 1 cut(s) 370
Hsp92II CATG 3 cut(s) 212, 467, 639
Kzo9I GATC 2 cut(s) 174, 442
Lsp1109I GCAGC 4 cut(s) 95, 189, 217, 697
LweI GCATC 2 cut(s) 229, 551
MaeI CTAG 1 cut(s) 170
MaeII ACGT 1 cut(s) 370
MaeIII GTNAC 3 cut(s) 310, 646, 678
MalI GATC 2 cut(s) 176, 444
MboI GATC 2 cut(s) 174, 442
MboII GAAGA 1 cut(s) 305
MhlI GDGCHC 3 cut(s) 162, 333, 499
MlsI TGGCCA 1 cut(s) 135
MluCI AATT 1 cut(s) 728
MluNI TGGCCA 1 cut(s) 135
MmeI TCCRAC 2 cut(s) 100, 458
MnlI CCTC 5 cut(s) 22, 105, 234, 259, 383
Mox20I TGGCCA 1 cut(s) 135
MscI TGGCCA 1 cut(s) 135
MseI TTAA 1 cut(s) 696
Msp20I TGGCCA 1 cut(s) 135
MspA1I CMGCKG 2 cut(s) 202, 326
MspR9I CCNGG 2 cut(s) 112, 387
MvaI CCWGG 2 cut(s) 112, 387
MwoI GCNNNNNNNGC 3 cut(s) 245, 503, 593
NdeII GATC 2 cut(s) 174, 442
NlaIII CATG 3 cut(s) 212, 467, 639
NlaIV GGNNCC 2 cut(s) 181, 572
NmeAIII GCCGAG 1 cut(s) 181
NmuCI GTSAC 2 cut(s) 310, 646
NspI RCATGY 1 cut(s) 212
PaeI GCATGC 1 cut(s) 212
PagI TCATGA 1 cut(s) 463
PfeI GAWTC 3 cut(s) 194, 296, 722
PflMI CCANNNNNTGG 3 cut(s) 66, 106, 670
PkrI GCNGC 5 cut(s) 85, 142, 204, 207, 712
Psp124BI GAGCTC 1 cut(s) 499
Psp6I CCWGG 2 cut(s) 110, 385
PspFI CCCAGC 1 cut(s) 198
PspGI CCWGG 2 cut(s) 110, 385
PspN4I GGNNCC 2 cut(s) 181, 572
PspPI GGNCC 1 cut(s) 661
PstI CTGCAG 2 cut(s) 207, 646
PvuII CAGCTG 2 cut(s) 202, 326
RsaI GTAC 1 cut(s) 35
RsaNI GTAC 1 cut(s) 34
SacI GAGCTC 1 cut(s) 499
SaqAI TTAA 1 cut(s) 696
SatI GCNGC 5 cut(s) 84, 141, 203, 206, 711
Sau3AI GATC 2 cut(s) 174, 442
Sau96I GGNCC 1 cut(s) 661
ScrFI CCNGG 2 cut(s) 112, 387
SduI GDGCHC 3 cut(s) 162, 333, 499
SfaNI GCATC 2 cut(s) 229, 551
SfcI CTRYAG 4 cut(s) 203, 321, 642, 651
SinI GGWCC 1 cut(s) 661
SpeI ACTAGT 1 cut(s) 169
SphI GCATGC 1 cut(s) 212
Sse9I AATT 1 cut(s) 728
SsiI CCGC 2 cut(s) 141, 218
SspMI CTAG 1 cut(s) 170
SstI GAGCTC 1 cut(s) 499
StyD4I CCNGG 2 cut(s) 110, 385
StyI CCWWGG 3 cut(s) 60, 657, 664
TaaI ACNGT 2 cut(s) 316, 416
TaiI ACGT 1 cut(s) 373
TaqI TCGA 2 cut(s) 232, 339
TasI AATT 1 cut(s) 728
TatI WGTACW 1 cut(s) 33
TauI GCSGC 1 cut(s) 143
TfiI GAWTC 3 cut(s) 194, 296, 722
Tru1I TTAA 1 cut(s) 696
Tru9I TTAA 1 cut(s) 696
TscAI CASTG 3 cut(s) 338, 421, 588
TseFI GTSAC 2 cut(s) 310, 646
TseI GCWGC 4 cut(s) 83, 202, 205, 710
Tsp45I GTSAC 2 cut(s) 310, 646
TspDTI ATGAA 3 cut(s) 180, 452, 467
TspRI CASTG 3 cut(s) 338, 421, 588
Van91I CCANNNNNTGG 3 cut(s) 66, 106, 670
VneI GTGCAC 1 cut(s) 329
VpaK11BI GGWCC 1 cut(s) 661
XceI RCATGY 1 cut(s) 212
XspI CTAG 1 cut(s) 170
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.