Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0001059

Physical Location & Seq

Genomic Coordinates Forward (+)

3374182 .. 3374854

Gene Structure 673 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0046400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGTCCGGCGGAGTTGCAGTTCCTTCTGTGAGCGACGGCCAGGCTTTATTTAGACACGACCACTACGTCGACTATCGCACCCAGGTAGAGTGGGTTCCAATCTCACAGAGAACTACTAGCCTTCCCATCCATATTTATCTCTTCAAGTCAATCGAAACTGAACCGAGCAAAACCATTACCTTCCTTCACAGCAACTATGATATGCAGTTCACTGAGGTCACCAGGGTTCTTGGAGACATGGGTGTTCCACGGCAGGTGCAGCAAACTATTGTTGCAAAGATATCTGAGTTTCTTGTTCTTGGGAATATGGACCGCACCGCTAATAATGGTTATATTGATGTGACCATAATACATGATGCAGCATACATAGATCTAAATATTGTTCCCAGTGATGAGGAAGATGATTCATATAGCTTTGATCAAATGTACATGGATGACTATTTTGATCATGATAGGGCTGCAAGGCAAAGAGGTTTTGATTTAATCGTTGAGCCAGATAATGACGATAGCGAGATCGAATGTGGAGATCCTTTGGATGCAATGTTAGCCAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_11

Protein Analysis

184

Amino Acids

20.91

Weight (kDa)

4.25

Isoelectric Point (pI)

49.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001059)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G22530 AT4G22530 AT5G10830
fragaria_vesca	FvH4_5g02050 FvH4_5g34810 FvH4_5g34810
malus_domestica	MD01G1117600.v1.1 MD01G1117900.v1.1 MD07G1186100.v1.1 MD08G1242500.v1.1 MD08G1242800.v1.1
prunus_persica	Prupe.1G580000_v2.0.a1 Prupe.1G580100_v2.0.a1 Prupe.4G160700_v2.0.a1
pyrus_communis	pycom01g14530 pycom08g21040 pycom15g38510
rosa_chinensis	RchiOBHm_Chr1g0334721 RchiOBHm_Chr7g0198261 RchiOBHm_Chr7g0235451 RchiOBHm_Chr7g0235491
rosa_laevigata	RLG00000001155 RLG00000001156 RLG00000003879 RLG00000029427 RLG00000029428 RLG00000029430
rosa_multiflora	Rmu_co8155022.1_g000001 Rmu_co8423201.1_g000001 Rmu_sc0000574.1_g000002 Rmu_sc0002892.1_g000013 Rmu_sc0002892.1_g000015 Rmu_sc0004498.1_g000005 Rmu_sc0004498.1_g000007 Rmu_sc0006031.1_g000022
rosa_roxburghii	Rroxscaffold_3G00225960 Rroxscaffold_3G00225980 Rroxscaffold_4G00316640
rosa_rugosa	Rorug01G0115200 Rorug01G0115300 Rorug07G0046400 Rorug07G0290900 Rorug07G0291000 Rorug07G0291100 Rorug07G0291200
rosa_samantha	Rh1BG107500 Rh1CG132300 Rh1DG144400 Rh7AG169900 Rh7AG446300 Rh7BG173100 Rh7BG418000 Rh7DG172300 Rh7DG434700 Rh7DG434800
rosa_wichuraiana	Rw1G011580 Rw7G014880 Rw7G037030 Rw7G037040 Rw7G037050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	244
AasI	GACNNNNNNGTC	1 cut(s)	65
Acc36I	ACCTGC	1 cut(s)	244
AccI	GTMKAC	1 cut(s)	69
AciI	CCGC	3 cut(s)	9, 313, 318
AclWI	GGATC	1 cut(s)	521
AcoI	YGGCCR	1 cut(s)	37
AfaI	GTAC	1 cut(s)	428
AgsI	TTSAA	1 cut(s)	145
AjnI	CCWGG	3 cut(s)	39, 81, 221
AloI	GAACNNNNNNTCC	1 cut(s)	35
AluBI	AGCT	2 cut(s)	414, 552
AluI	AGCT	2 cut(s)	414, 552
Alw26I	GTCTC	1 cut(s)	228
AlwI	GGATC	1 cut(s)	521
AoxI	GGCC	1 cut(s)	37
ApeKI	GCWGC	3 cut(s)	259, 359, 458
AspS9I	GGNCC	1 cut(s)	310
AsuHPI	GGTGA	1 cut(s)	211
AvaII	GGWCC	1 cut(s)	310
BbvI	GCAGC	3 cut(s)	271, 371, 445
BccI	CCATC	1 cut(s)	134
BceAI	ACGGC	2 cut(s)	52, 266
BciT130I	CCWGG	3 cut(s)	41, 83, 223
BclI	TGATCA	2 cut(s)	418, 445
BcoDI	GTCTC	1 cut(s)	228
BfaI	CTAG	1 cut(s)	117
BfuAI	ACCTGC	1 cut(s)	244
BglII	AGATCT	1 cut(s)	370
BisI	GCNGC	3 cut(s)	260, 360, 459
BlsI	GCNGC	3 cut(s)	261, 361, 460
Bme1390I	CCNGG	3 cut(s)	41, 83, 223
Bme18I	GGWCC	1 cut(s)	310
BmgT120I	GGNCC	1 cut(s)	310
BmiI	GGNNCC	1 cut(s)	96
BmrFI	CCNGG	3 cut(s)	41, 83, 223
BmrI	ACTGGG	1 cut(s)	381
BmsI	GCATC	2 cut(s)	346, 526
BmuI	ACTGGG	1 cut(s)	381
BsaJI	CCNNGG	3 cut(s)	81, 222, 248
BsaXI	ACNNNNNCTCC	1 cut(s)	33
Bse1I	ACTGG	1 cut(s)	387
Bse3DI	GCAATG	1 cut(s)	546
BseBI	CCWGG	3 cut(s)	41, 83, 223
BseDI	CCNNGG	3 cut(s)	81, 222, 248
BseGI	GGATG	3 cut(s)	126, 439, 541
BseMI	GCAATG	1 cut(s)	546
BseMII	CTCAG	2 cut(s)	204, 276
BseNI	ACTGG	1 cut(s)	387
BseXI	GCAGC	3 cut(s)	271, 371, 445
BsgI	GTGCAG	1 cut(s)	278
BshFI	GGCC	1 cut(s)	39
BsiSI	CCGG	1 cut(s)	6
BsmAI	GTCTC	1 cut(s)	228
BsnI	GGCC	1 cut(s)	39
Bsp1407I	TGTACA	1 cut(s)	426
Bsp143I	GATC	5 cut(s)	370, 418, 445, 513, 526
BspACI	CCGC	3 cut(s)	9, 313, 318
BspANI	GGCC	1 cut(s)	39
BspCNI	CTCAG	2 cut(s)	205, 277
BspHI	TCATGA	1 cut(s)	448
BspLI	GGNNCC	1 cut(s)	96
BspMI	ACCTGC	1 cut(s)	244
BspPI	GGATC	1 cut(s)	521
BsrDI	GCAATG	1 cut(s)	546
BsrGI	TGTACA	1 cut(s)	426
BsrI	ACTGG	1 cut(s)	387
BssECI	CCNNGG	3 cut(s)	81, 222, 248
BssMI	GATC	5 cut(s)	370, 418, 445, 513, 526
Bst2UI	CCWGG	3 cut(s)	41, 83, 223
Bst6I	CTCTTC	1 cut(s)	146
BstAUI	TGTACA	1 cut(s)	426
BstC8I	GCNNGC	1 cut(s)	550
BstDEI	CTNAG	2 cut(s)	213, 285
BstDSI	CCRYGG	1 cut(s)	248
BstEII	GGTNACC	1 cut(s)	217
BstF5I	GGATG	3 cut(s)	126, 439, 541
BstKTI	GATC	5 cut(s)	373, 421, 448, 516, 529
BstMAI	GTCTC	1 cut(s)	228
BstMBI	GATC	5 cut(s)	370, 418, 445, 513, 526
BstMWI	GCNNNNNNNGC	2 cut(s)	259, 545
BstNI	CCWGG	3 cut(s)	41, 83, 223
BstPI	GGTNACC	1 cut(s)	217
BstSCI	CCNGG	3 cut(s)	39, 81, 221
BstV1I	GCAGC	3 cut(s)	271, 371, 445
BstX2I	RGATCY	2 cut(s)	370, 526
BstYI	RGATCY	2 cut(s)	370, 526
BsuRI	GGCC	1 cut(s)	39
BtgI	CCRYGG	1 cut(s)	248
BtsCI	GGATG	3 cut(s)	126, 439, 541
BtsIMutI	CAGTG	2 cut(s)	210, 394
BveI	ACCTGC	1 cut(s)	244
Cac8I	GCNNGC	1 cut(s)	550
CciI	TCATGA	1 cut(s)	448
Cfr13I	GGNCC	1 cut(s)	310
Csp6I	GTAC	1 cut(s)	427
CviAII	CATG	4 cut(s)	238, 353, 430, 449
CviJI	RGCY	8 cut(s)	39, 44, 120, 414, 458, 493, 548, 552
CviKI_1	RGCY	8 cut(s)	39, 44, 120, 414, 458, 493, 548, 552
CviQI	GTAC	1 cut(s)	427
DdeI	CTNAG	2 cut(s)	213, 285
DpnI	GATC	5 cut(s)	372, 420, 447, 515, 528
DpnII	GATC	5 cut(s)	370, 418, 445, 513, 526
DrdI	GACNNNNNNGTC	1 cut(s)	65
DseDI	GACNNNNNNGTC	1 cut(s)	65
EaeI	YGGCCR	1 cut(s)	37
Eam1104I	CTCTTC	1 cut(s)	146
EarI	CTCTTC	1 cut(s)	146
EciI	GGCGGA	1 cut(s)	24
Eco32I	GATATC	1 cut(s)	282
Eco47I	GGWCC	1 cut(s)	310
Eco91I	GGTNACC	1 cut(s)	217
EcoO65I	GGTNACC	1 cut(s)	217
EcoRII	CCWGG	3 cut(s)	39, 81, 221
EcoRV	GATATC	1 cut(s)	282
FaeI	CATG	4 cut(s)	241, 356, 433, 452
FatI	CATG	4 cut(s)	237, 352, 429, 448
FbaI	TGATCA	2 cut(s)	418, 445
FblI	GTMKAC	1 cut(s)	69
Fnu4HI	GCNGC	3 cut(s)	260, 360, 459
FokI	GGATG	3 cut(s)	113, 446, 548
Fsp4HI	GCNGC	3 cut(s)	260, 360, 459
FspBI	CTAG	1 cut(s)	117
GluI	GCNGC	3 cut(s)	260, 360, 459
HaeIII	GGCC	1 cut(s)	39
HapII	CCGG	1 cut(s)	6
Hin1II	CATG	4 cut(s)	241, 356, 433, 452
HincII	GTYRAC	1 cut(s)	70
HindII	GTYRAC	1 cut(s)	70
HinfI	GANTC	1 cut(s)	404
HpaII	CCGG	1 cut(s)	6
HphI	GGTGA	1 cut(s)	211
Hpy166II	GTNNAC	2 cut(s)	70, 210
Hpy188I	TCNGA	1 cut(s)	286
Hpy188III	TCNNGA	1 cut(s)	449
Hpy8I	GTNNAC	2 cut(s)	70, 210
Hpy99I	CGWCG	2 cut(s)	38, 71
HpyAV	CCTTC	4 cut(s)	33, 131, 190, 194
HpyCH4IV	ACGT	1 cut(s)	66
HpyCH4V	TGCA	7 cut(s)	17, 205, 259, 275, 359, 461, 539
HpyF10VI	GCNNNNNNNGC	2 cut(s)	259, 545
HpyF3I	CTNAG	2 cut(s)	213, 285
HpySE526I	ACGT	1 cut(s)	66
Hsp92II	CATG	4 cut(s)	241, 356, 433, 452
Ksp22I	TGATCA	2 cut(s)	418, 445
Kzo9I	GATC	5 cut(s)	370, 418, 445, 513, 526
Lsp1109I	GCAGC	3 cut(s)	271, 371, 445
LweI	GCATC	2 cut(s)	346, 526
MaeI	CTAG	1 cut(s)	117
MaeII	ACGT	1 cut(s)	66
MaeIII	GTNAC	2 cut(s)	217, 340
MalI	GATC	5 cut(s)	372, 420, 447, 515, 528
MboI	GATC	5 cut(s)	370, 418, 445, 513, 526
MboII	GAAGA	2 cut(s)	133, 410
MflI	RGATCY	2 cut(s)	370, 526
MnlI	CCTC	3 cut(s)	208, 388, 464
MseI	TTAA	1 cut(s)	482
MspA1I	CMGCKG	1 cut(s)	552
MspI	CCGG	1 cut(s)	6
MspR9I	CCNGG	3 cut(s)	41, 83, 223
MvaI	CCWGG	3 cut(s)	41, 83, 223
MwoI	GCNNNNNNNGC	2 cut(s)	259, 545
NdeII	GATC	5 cut(s)	370, 418, 445, 513, 526
NlaIII	CATG	4 cut(s)	241, 356, 433, 452
NlaIV	GGNNCC	1 cut(s)	96
NmuCI	GTSAC	2 cut(s)	217, 340
PagI	TCATGA	1 cut(s)	448
PaqCI	CACCTGC	1 cut(s)	244
PcsI	WCGNNNNNNNCGW	1 cut(s)	63
PfeI	GAWTC	1 cut(s)	404
PkrI	GCNGC	3 cut(s)	261, 361, 460
Psp6I	CCWGG	3 cut(s)	39, 81, 221
PspEI	GGTNACC	1 cut(s)	217
PspGI	CCWGG	3 cut(s)	39, 81, 221
PspN4I	GGNNCC	1 cut(s)	96
PspPI	GGNCC	1 cut(s)	310
PsrI	GAACNNNNNNTAC	2 cut(s)	78, 110
PsuI	RGATCY	2 cut(s)	370, 526
PvuII	CAGCTG	1 cut(s)	552
RsaI	GTAC	1 cut(s)	428
RsaNI	GTAC	1 cut(s)	427
SalI	GTCGAC	1 cut(s)	68
SaqAI	TTAA	1 cut(s)	482
SatI	GCNGC	3 cut(s)	260, 360, 459
Sau3AI	GATC	5 cut(s)	370, 418, 445, 513, 526
Sau96I	GGNCC	1 cut(s)	310
ScrFI	CCNGG	3 cut(s)	41, 83, 223
SetI	ASST	8 cut(s)	69, 87, 182, 219, 258, 416, 475, 554
SfaNI	GCATC	2 cut(s)	346, 526
SinI	GGWCC	1 cut(s)	310
SsiI	CCGC	3 cut(s)	9, 313, 318
SspI	AATATT	1 cut(s)	379
SspMI	CTAG	1 cut(s)	117
StyD4I	CCNGG	3 cut(s)	39, 81, 221
TaiI	ACGT	1 cut(s)	69
TaqI	TCGA	3 cut(s)	69, 153, 516
TatI	WGTACW	1 cut(s)	426
TfiI	GAWTC	1 cut(s)	404
Tru1I	TTAA	1 cut(s)	482
Tru9I	TTAA	1 cut(s)	482
TscAI	CASTG	2 cut(s)	217, 394
TseFI	GTSAC	2 cut(s)	217, 340
TseI	GCWGC	3 cut(s)	259, 359, 458
Tsp45I	GTSAC	2 cut(s)	217, 340
TspDTI	ATGAA	1 cut(s)	396
TspRI	CASTG	2 cut(s)	217, 394
VpaK11BI	GGWCC	1 cut(s)	310
XmiI	GTMKAC	1 cut(s)	69
XspI	CTAG	1 cut(s)	117

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.