Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0001059

Physical Location & Seq

Genomic Coordinates Forward (+)

61854200 .. 61855467

Gene Structure 1268 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG434700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 828 bp

ATGCTCCTTCAATCTTCTACCTTCACCAACAGGAAAATGGCAGGTCTATTTGACAAGCAGGCAGAGACATACGTGGAAGCTCGGCCAACGTATCCCAAGGAATGGTATTCAAAGCTGGCTGCTCTCACCCCACAACACTCCTTAGCTTGGGATGTTGGCACTGGCAATGGCCAAGCTACCGTCGGTCTTTTAGAGCATTACGACCAAGTAGTTGGAAGTGATATAAGTGAAGCACAATTGAACCGTGCCATCCAGCACCCTCGAGTTCGATACATTCACACTCCAACATCAATCTCAGACGATGAAATGGTTAACTTAATAGGGGGCGGTCATGAAAATTCAGTTGATTTGGTTACAGTGGCTACTGCCGTTCACTGGTTTGATCTGCCGCACTTCTACTCGCTTGTCAAACGCCTTCTGCGTAAACCAGGAGGCATAATTGCTGTTTGGTGCTACAACAGCATGGACGGCACAGTCGTAGGCCCTGACTTTGATCTTGCAATGAAGCGTTTTCACGAAAATTGTCTACCATTTCGGGACCCGAGGGCAAAGTACGCATTTGAGGGTTATAGGACACTTCCTTTTCCATTTGAGAGCGTTGGATTGGGTCGTGAAGGTGAACCTATCACACTTGAAATACCAAGGGAATTGTCATTTCAGGGGGTTGAGAGGATGTTGAGGTCTTACTCTGCAGTCACTACGGCTAAAGACCAGGGTGTGGATTTGTTGTCTGAAGATGTGATTAAAGAGCTTCAAAGATCTTGGGGTGGGCATGATCTGATTAGATCAGTTACAATCAAGGCATTTATGCTTGTGGGCAAATTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_11

Protein Analysis

275

Amino Acids

30.9

Weight (kDa)

6.14

Isoelectric Point (pI)

31.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltransf_11	PF08241	51 - 148	6.2e-09	Methyltransferase domain
Methyltransf_25	PF13649	51 - 143	2.3e-08	Methyltransferase domain
Methyltransf_12	PF08242	51 - 146	4.7e-07	Methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001059)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G22530 AT4G22530 AT5G10830
fragaria_vesca	FvH4_5g02050 FvH4_5g34810 FvH4_5g34810
malus_domestica	MD01G1117600.v1.1 MD01G1117900.v1.1 MD07G1186100.v1.1 MD08G1242500.v1.1 MD08G1242800.v1.1
prunus_persica	Prupe.1G580000_v2.0.a1 Prupe.1G580100_v2.0.a1 Prupe.4G160700_v2.0.a1
pyrus_communis	pycom01g14530 pycom08g21040 pycom15g38510
rosa_chinensis	RchiOBHm_Chr1g0334721 RchiOBHm_Chr7g0198261 RchiOBHm_Chr7g0235451 RchiOBHm_Chr7g0235491
rosa_laevigata	RLG00000001155 RLG00000001156 RLG00000003879 RLG00000029427 RLG00000029428 RLG00000029430
rosa_multiflora	Rmu_co8155022.1_g000001 Rmu_co8423201.1_g000001 Rmu_sc0000574.1_g000002 Rmu_sc0002892.1_g000013 Rmu_sc0002892.1_g000015 Rmu_sc0004498.1_g000005 Rmu_sc0004498.1_g000007 Rmu_sc0006031.1_g000022
rosa_roxburghii	Rroxscaffold_3G00225960 Rroxscaffold_3G00225980 Rroxscaffold_4G00316640
rosa_rugosa	Rorug01G0115200 Rorug01G0115300 Rorug07G0046400 Rorug07G0290900 Rorug07G0291000 Rorug07G0291100 Rorug07G0291200
rosa_samantha	Rh1BG107500 Rh1CG132300 Rh1DG144400 Rh7AG169900 Rh7AG446300 Rh7BG173100 Rh7BG418000 Rh7DG172300 Rh7DG434700 Rh7DG434800
rosa_wichuraiana	Rw1G011580 Rw7G014880 Rw7G037030 Rw7G037040 Rw7G037050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	826
AasI	GACNNNNNNGTC	1 cut(s)	473
Acc36I	ACCTGC	1 cut(s)	32
AccB7I	CCANNNNNTGG	2 cut(s)	102, 718
AccI	GTMKAC	1 cut(s)	526
AciI	CCGC	2 cut(s)	327, 389
AcoI	YGGCCR	2 cut(s)	83, 169
AcsI	RAATTY	1 cut(s)	337
AcuI	CTGAAG	1 cut(s)	753
AfaI	GTAC	1 cut(s)	554
AfiI	CCNNNNNNNGG	4 cut(s)	102, 147, 375, 718
AgsI	TTSAA	5 cut(s)	11, 111, 241, 635, 755
AjnI	CCWGG	2 cut(s)	427, 711
AluBI	AGCT	5 cut(s)	80, 115, 146, 176, 751
AluI	AGCT	5 cut(s)	80, 115, 146, 176, 751
Alw26I	GTCTC	1 cut(s)	59
Ama87I	CYCGRG	2 cut(s)	261, 541
AoxI	GGCC	3 cut(s)	83, 169, 481
ApeKI	GCWGC	1 cut(s)	119
ApoI	RAATTY	1 cut(s)	337
AspS9I	GGNCC	2 cut(s)	482, 538
AsuHPI	GGTGA	3 cut(s)	16, 118, 629
AvaI	CYCGRG	2 cut(s)	261, 541
AvaII	GGWCC	1 cut(s)	538
BalI	TGGCCA	1 cut(s)	171
BbvI	GCAGC	1 cut(s)	106
BccI	CCATC	1 cut(s)	257
BceAI	ACGGC	3 cut(s)	353, 484, 717
BciT130I	CCWGG	2 cut(s)	429, 713
BciVI	GTATCC	1 cut(s)	102
BcoDI	GTCTC	1 cut(s)	59
BfmI	CTRYAG	1 cut(s)	690
BfuAI	ACCTGC	1 cut(s)	32
BfuI	GTATCC	1 cut(s)	102
BglII	AGATCT	1 cut(s)	758
BisI	GCNGC	2 cut(s)	120, 389
BlsI	GCNGC	2 cut(s)	121, 390
Bme1390I	CCNGG	2 cut(s)	429, 713
Bme18I	GGWCC	1 cut(s)	538
BmeT110I	CYCGRG	2 cut(s)	261, 541
BmgT120I	GGNCC	2 cut(s)	482, 538
BmiI	GGNNCC	2 cut(s)	539, 540
BmrFI	CCNGG	2 cut(s)	429, 713
Bpu10I	CCTNAGC	1 cut(s)	142
BsaAI	YACGTR	1 cut(s)	73
BsaJI	CCNNGG	4 cut(s)	96, 542, 641, 712
Bsc4I	CCNNNNNNNGG	4 cut(s)	102, 147, 375, 718
Bse1I	ACTGG	2 cut(s)	166, 380
Bse3DI	GCAATG	2 cut(s)	172, 507
BseBI	CCWGG	2 cut(s)	429, 713
BseDI	CCNNGG	4 cut(s)	96, 542, 641, 712
BseGI	GGATG	3 cut(s)	157, 249, 678
BseLI	CCNNNNNNNGG	4 cut(s)	102, 147, 375, 718
BseMI	GCAATG	2 cut(s)	172, 507
BseMII	CTCAG	1 cut(s)	309
BseNI	ACTGG	2 cut(s)	166, 380
BseXI	GCAGC	1 cut(s)	106
BshFI	GGCC	3 cut(s)	85, 171, 483
BsiHKCI	CYCGRG	2 cut(s)	261, 541
BslFI	GGGAC	1 cut(s)	551
BslI	CCNNNNNNNGG	4 cut(s)	102, 147, 375, 718
BsmAI	GTCTC	1 cut(s)	59
BsmFI	GGGAC	1 cut(s)	551
BsnI	GGCC	3 cut(s)	85, 171, 483
BsoBI	CYCGRG	2 cut(s)	261, 541
Bsp143I	GATC	5 cut(s)	382, 493, 758, 775, 785
BspACI	CCGC	2 cut(s)	327, 389
BspANI	GGCC	3 cut(s)	85, 171, 483
BspCNI	CTCAG	1 cut(s)	308
BspHI	TCATGA	1 cut(s)	331
BspLI	GGNNCC	2 cut(s)	539, 540
BspMAI	CTGCAG	1 cut(s)	694
BspMI	ACCTGC	1 cut(s)	32
BsrDI	GCAATG	2 cut(s)	172, 507
BsrI	ACTGG	2 cut(s)	166, 380
BssECI	CCNNGG	4 cut(s)	96, 542, 641, 712
BssMI	GATC	5 cut(s)	382, 493, 758, 775, 785
BssT1I	CCWWGG	2 cut(s)	96, 641
Bst2UI	CCWGG	2 cut(s)	429, 713
Bst4CI	ACNGT	4 cut(s)	181, 245, 358, 475
BstBAI	YACGTR	1 cut(s)	73
BstC8I	GCNNGC	2 cut(s)	60, 117
BstDEI	CTNAG	2 cut(s)	142, 295
BstF5I	GGATG	3 cut(s)	157, 249, 678
BstKTI	GATC	5 cut(s)	385, 496, 761, 778, 788
BstMAI	GTCTC	1 cut(s)	59
BstMBI	GATC	5 cut(s)	382, 493, 758, 775, 785
BstMWI	GCNNNNNNNGC	3 cut(s)	459, 468, 554
BstNI	CCWGG	2 cut(s)	429, 713
BstSCI	CCNGG	2 cut(s)	427, 711
BstSFI	CTRYAG	1 cut(s)	690
BstV1I	GCAGC	1 cut(s)	106
BstX2I	RGATCY	1 cut(s)	758
BstXI	CCANNNNNNTGG	1 cut(s)	212
BstYI	RGATCY	1 cut(s)	758
BsuI	GTATCC	1 cut(s)	102
BsuRI	GGCC	3 cut(s)	85, 171, 483
BtsCI	GGATG	3 cut(s)	157, 249, 678
BtsIMutI	CAGTG	3 cut(s)	159, 363, 373
BveI	ACCTGC	1 cut(s)	32
Cac8I	GCNNGC	2 cut(s)	60, 117
CciI	TCATGA	1 cut(s)	331
Cfr13I	GGNCC	2 cut(s)	482, 538
Csp6I	GTAC	1 cut(s)	553
CviAII	CATG	3 cut(s)	332, 463, 773
CviQI	GTAC	1 cut(s)	553
DdeI	CTNAG	2 cut(s)	142, 295
DpnI	GATC	5 cut(s)	384, 495, 760, 777, 787
DpnII	GATC	5 cut(s)	382, 493, 758, 775, 785
DrdI	GACNNNNNNGTC	1 cut(s)	473
DseDI	GACNNNNNNGTC	1 cut(s)	473
EaeI	YGGCCR	2 cut(s)	83, 169
Eco130I	CCWWGG	2 cut(s)	96, 641
Eco47I	GGWCC	1 cut(s)	538
Eco57I	CTGAAG	1 cut(s)	753
Eco88I	CYCGRG	2 cut(s)	261, 541
EcoO109I	RGGNCCY	2 cut(s)	482, 538
EcoRII	CCWGG	2 cut(s)	427, 711
EcoT14I	CCWWGG	2 cut(s)	96, 641
ErhI	CCWWGG	2 cut(s)	96, 641
FaeI	CATG	3 cut(s)	335, 466, 776
FaiI	YATR	9 cut(s)	70, 224, 333, 437, 464, 570, 774, 809, 826
FaqI	GGGAC	1 cut(s)	551
FatI	CATG	3 cut(s)	331, 462, 772
FblI	GTMKAC	1 cut(s)	526
Fnu4HI	GCNGC	2 cut(s)	120, 389
FokI	GGATG	3 cut(s)	164, 236, 685
Fsp4HI	GCNGC	2 cut(s)	120, 389
GluI	GCNGC	2 cut(s)	120, 389
HaeIII	GGCC	3 cut(s)	85, 171, 483
Hin1II	CATG	3 cut(s)	335, 466, 776
HincII	GTYRAC	1 cut(s)	313
HindII	GTYRAC	1 cut(s)	313
HpaI	GTTAAC	1 cut(s)	313
HphI	GGTGA	3 cut(s)	16, 118, 629
Hpy166II	GTNNAC	5 cut(s)	313, 373, 425, 527, 620
Hpy188I	TCNGA	3 cut(s)	298, 733, 780
Hpy188III	TCNNGA	4 cut(s)	332, 515, 536, 611
Hpy8I	GTNNAC	5 cut(s)	313, 373, 425, 527, 620
Hpy99I	CGWCG	1 cut(s)	185
HpyAV	CCTTC	4 cut(s)	17, 31, 425, 608
HpyCH4III	ACNGT	4 cut(s)	181, 245, 358, 475
HpyCH4IV	ACGT	2 cut(s)	72, 89
HpyCH4V	TGCA	2 cut(s)	500, 692
HpyF10VI	GCNNNNNNNGC	3 cut(s)	459, 468, 554
HpyF3I	CTNAG	2 cut(s)	142, 295
HpySE526I	ACGT	2 cut(s)	72, 89
Hsp92II	CATG	3 cut(s)	335, 466, 776
KflI	GGGWCCC	1 cut(s)	538
KspAI	GTTAAC	1 cut(s)	313
Kzo9I	GATC	5 cut(s)	382, 493, 758, 775, 785
LmnI	GCTCC	1 cut(s)	9
Lsp1109I	GCAGC	1 cut(s)	106
MaeII	ACGT	2 cut(s)	72, 89
MaeIII	GTNAC	3 cut(s)	352, 694, 790
MalI	GATC	5 cut(s)	384, 495, 760, 777, 787
MboI	GATC	5 cut(s)	382, 493, 758, 775, 785
MboII	GAAGA	2 cut(s)	6, 746
MfeI	CAATTG	1 cut(s)	236
MflI	RGATCY	1 cut(s)	758
MlsI	TGGCCA	1 cut(s)	171
MluCI	AATT	6 cut(s)	236, 337, 438, 520, 647, 821
MluNI	TGGCCA	1 cut(s)	171
MmeI	TCCRAC	3 cut(s)	193, 308, 580
MnlI	CCTC	6 cut(s)	270, 425, 537, 556, 663, 672
Mox20I	TGGCCA	1 cut(s)	171
MscI	TGGCCA	1 cut(s)	171
MseI	TTAA	3 cut(s)	312, 317, 744
Msp20I	TGGCCA	1 cut(s)	171
MspR9I	CCNGG	2 cut(s)	429, 713
MunI	CAATTG	1 cut(s)	236
MvaI	CCWGG	2 cut(s)	429, 713
MwoI	GCNNNNNNNGC	3 cut(s)	459, 468, 554
NdeII	GATC	5 cut(s)	382, 493, 758, 775, 785
NlaIII	CATG	3 cut(s)	335, 466, 776
NlaIV	GGNNCC	2 cut(s)	539, 540
NmeAIII	GCCGAG	1 cut(s)	61
NmuCI	GTSAC	1 cut(s)	694
PaeR7I	CTCGAG	1 cut(s)	261
PagI	TCATGA	1 cut(s)	331
PcsI	WCGNNNNNNNCGW	2 cut(s)	418, 474
PflMI	CCANNNNNTGG	2 cut(s)	102, 718
PkrI	GCNGC	2 cut(s)	121, 390
Ppu21I	YACGTR	1 cut(s)	73
PpuMI	RGGWCCY	1 cut(s)	538
PsiI	TTATAA	1 cut(s)	826
Psp5II	RGGWCCY	1 cut(s)	538
Psp6I	CCWGG	2 cut(s)	427, 711
PspGI	CCWGG	2 cut(s)	427, 711
PspN4I	GGNNCC	2 cut(s)	539, 540
PspPI	GGNCC	2 cut(s)	482, 538
PspPPI	RGGWCCY	1 cut(s)	538
PspXI	VCTCGAGB	1 cut(s)	261
PstI	CTGCAG	1 cut(s)	694
PsuI	RGATCY	1 cut(s)	758
RsaI	GTAC	1 cut(s)	554
RsaNI	GTAC	1 cut(s)	553
SaqAI	TTAA	3 cut(s)	312, 317, 744
SatI	GCNGC	2 cut(s)	120, 389
Sau3AI	GATC	5 cut(s)	382, 493, 758, 775, 785
Sau96I	GGNCC	2 cut(s)	482, 538
ScrFI	CCNGG	2 cut(s)	429, 713
SfcI	CTRYAG	1 cut(s)	690
Sfr274I	CTCGAG	1 cut(s)	261
SinI	GGWCC	1 cut(s)	538
SlaI	CTCGAG	1 cut(s)	261
SmlI	CTYRAG	1 cut(s)	261
SmoI	CTYRAG	1 cut(s)	261
Sse9I	AATT	6 cut(s)	236, 337, 438, 520, 647, 821
SsiI	CCGC	2 cut(s)	327, 389
StyD4I	CCNGG	2 cut(s)	427, 711
StyI	CCWWGG	2 cut(s)	96, 641
TaaI	ACNGT	4 cut(s)	181, 245, 358, 475
TaiI	ACGT	2 cut(s)	75, 92
TaqI	TCGA	2 cut(s)	262, 268
TaqII	GACCGA	1 cut(s)	173
TasI	AATT	6 cut(s)	236, 337, 438, 520, 647, 821
TauI	GCSGC	1 cut(s)	391
Tru1I	TTAA	3 cut(s)	312, 317, 744
Tru9I	TTAA	3 cut(s)	312, 317, 744
TscAI	CASTG	3 cut(s)	166, 363, 380
TseFI	GTSAC	1 cut(s)	694
TseI	GCWGC	1 cut(s)	119
Tsp45I	GTSAC	1 cut(s)	694
TspDTI	ATGAA	3 cut(s)	318, 348, 518
TspRI	CASTG	3 cut(s)	166, 363, 380
Van91I	CCANNNNNTGG	2 cut(s)	102, 718
VpaK11BI	GGWCC	1 cut(s)	538
XapI	RAATTY	1 cut(s)	337
XcmI	CCANNNNNNNNNTGG	1 cut(s)	34
XhoI	CTCGAG	1 cut(s)	261
XmiI	GTMKAC	1 cut(s)	526

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.