Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0001059

Physical Location & Seq

Genomic Coordinates Forward (+)

25478518 .. 25480401

Gene Structure 1884 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g34810.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

ATGGCGGGTCTATTTGACAAGCAGGCAGAGATATATGTGGAAGCTCGGCCAACATATCCAAAGGAATGGTACTCAAAGCTGGCTGCTCTCACCCCACAACACTCTTTAGCTTGGGATGCTGGCACCGGCAATGGCCAAGCTGCTCTTGGTCTTTCAGAGCATTACCAACAAGTAGTAGCAACTGATATAAGTGAGGAACAGCTGAAATATGCCATCCAGCACCCTCGAATTCGATACATTCATACTCCCACATCACTCTCAGAGGATGAAATGGTCAACTTGATAGGGGGAGGTCATGAGAATTCATTAGATTTGATTACTGTGGCAGAGGCTGTTCATTGGTTTGATCTCCCACAGTTCTACTCACTTGCCAAACGCCTTCTGCGTAAACCAGGAGGCATAATTGCTGTTTGGGCTTACAACAGAATGTTGGTAAACCCTGAGTTTGATCCTGTATTTGATCGTTTCCGCGAAAACTGTATACCATTTACACACCCAAACTCAAAGTATGTAAGGGCAGGTTACAAGACACTCCCTTTTCCATTTGAGAGCGTTGGAATGGGTCGTGAAGGTGAGCCTCTGACACTTGAAATACCAAAGGAAGTGTCATTTCAGGGGGTTGAGAGGATGTTGAGGTCTTACTCTGCAGTCATTAGAGCTAAAGACCAGGGAGTGGACATGTTGTCTGAAGAAGTGATCAAAGAGTTTGAAAGAGCTTGGGGTGGGCGTGATCTGGTTAGATCTTTTAAGTACGAGGCTTTTATGCTCGTGGGAAAGTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_11

Protein Analysis

261

Amino Acids

29.6

Weight (kDa)

5.85

Isoelectric Point (pI)

33.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltransf_11	PF08241	39 - 136	1.6e-09	Methyltransferase domain
Methyltransf_25	PF13649	39 - 132	3.1e-08	Methyltransferase domain
Methyltransf_12	PF08242	39 - 134	4.3e-06	Methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001059)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G22530 AT4G22530 AT5G10830
fragaria_vesca	FvH4_5g02050 FvH4_5g34810 FvH4_5g34810
malus_domestica	MD01G1117600.v1.1 MD01G1117900.v1.1 MD07G1186100.v1.1 MD08G1242500.v1.1 MD08G1242800.v1.1
prunus_persica	Prupe.1G580000_v2.0.a1 Prupe.1G580100_v2.0.a1 Prupe.4G160700_v2.0.a1
pyrus_communis	pycom01g14530 pycom08g21040 pycom15g38510
rosa_chinensis	RchiOBHm_Chr1g0334721 RchiOBHm_Chr7g0198261 RchiOBHm_Chr7g0235451 RchiOBHm_Chr7g0235491
rosa_laevigata	RLG00000001155 RLG00000001156 RLG00000003879 RLG00000029427 RLG00000029428 RLG00000029430
rosa_multiflora	Rmu_co8155022.1_g000001 Rmu_co8423201.1_g000001 Rmu_sc0000574.1_g000002 Rmu_sc0002892.1_g000013 Rmu_sc0002892.1_g000015 Rmu_sc0004498.1_g000005 Rmu_sc0004498.1_g000007 Rmu_sc0006031.1_g000022
rosa_roxburghii	Rroxscaffold_3G00225960 Rroxscaffold_3G00225980 Rroxscaffold_4G00316640
rosa_rugosa	Rorug01G0115200 Rorug01G0115300 Rorug07G0046400 Rorug07G0290900 Rorug07G0291000 Rorug07G0291100 Rorug07G0291200
rosa_samantha	Rh1BG107500 Rh1CG132300 Rh1DG144400 Rh7AG169900 Rh7AG446300 Rh7BG173100 Rh7BG418000 Rh7DG172300 Rh7DG434700 Rh7DG434800
rosa_wichuraiana	Rw1G011580 Rw7G014880 Rw7G037030 Rw7G037040 Rw7G037050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	509
AccB1I	GGYRCC	1 cut(s)	122
AccB7I	CCANNNNNTGG	1 cut(s)	673
AccI	GTMKAC	1 cut(s)	481
AccII	CGCG	1 cut(s)	471
AciI	CCGC	2 cut(s)	5, 469
AclWI	GGATC	1 cut(s)	443
AcoI	YGGCCR	2 cut(s)	47, 133
AcsI	RAATTY	2 cut(s)	228, 301
AcuI	CTGAAG	1 cut(s)	708
AfaI	GTAC	2 cut(s)	71, 752
AfiI	CCNNNNNNNGG	1 cut(s)	673
AflIII	ACRYGT	1 cut(s)	678
AgsI	TTSAA	2 cut(s)	590, 710
AhdI	GACNNNNNGTC	1 cut(s)	682
AjnI	CCWGG	2 cut(s)	391, 666
AluBI	AGCT	7 cut(s)	44, 79, 110, 140, 202, 659, 716
AluI	AGCT	7 cut(s)	44, 79, 110, 140, 202, 659, 716
AlwI	GGATC	1 cut(s)	443
AlwNI	CAGNNNCTG	1 cut(s)	332
AoxI	GGCC	2 cut(s)	47, 133
ApeKI	GCWGC	2 cut(s)	83, 140
ApoI	RAATTY	2 cut(s)	228, 301
ArsI	GACNNNNNNTTYG	2 cut(s)	590, 622
AsuHPI	GGTGA	2 cut(s)	82, 584
BalI	TGGCCA	1 cut(s)	135
BanI	GGYRCC	1 cut(s)	122
BauI	CACGAG	1 cut(s)	767
BbvI	GCAGC	2 cut(s)	70, 127
BccI	CCATC	1 cut(s)	221
BciT130I	CCWGG	2 cut(s)	393, 668
BclI	TGATCA	1 cut(s)	696
BfmI	CTRYAG	1 cut(s)	645
BfuAI	ACCTGC	1 cut(s)	509
BglII	AGATCT	1 cut(s)	740
BisI	GCNGC	2 cut(s)	84, 141
BlsI	GCNGC	2 cut(s)	85, 142
Bme1390I	CCNGG	2 cut(s)	393, 668
BmeRI	GACNNNNNGTC	1 cut(s)	682
BmiI	GGNNCC	1 cut(s)	124
BmrFI	CCNGG	2 cut(s)	393, 668
BmsI	GCATC	1 cut(s)	106
BsaJI	CCNNGG	1 cut(s)	667
Bsc4I	CCNNNNNNNGG	1 cut(s)	673
Bse118I	RCCGGY	1 cut(s)	125
Bse3DI	GCAATG	1 cut(s)	136
BseBI	CCWGG	2 cut(s)	393, 668
BseDI	CCNNGG	1 cut(s)	667
BseGI	GGATG	4 cut(s)	121, 213, 271, 633
BseLI	CCNNNNNNNGG	1 cut(s)	673
BseMI	GCAATG	1 cut(s)	136
BseMII	CTCAG	2 cut(s)	273, 432
BseXI	GCAGC	2 cut(s)	70, 127
Bsh1236I	CGCG	1 cut(s)	471
BshFI	GGCC	2 cut(s)	49, 135
BshNI	GGYRCC	1 cut(s)	122
BsiSI	CCGG	1 cut(s)	126
BslI	CCNNNNNNNGG	1 cut(s)	673
BsnI	GGCC	2 cut(s)	49, 135
Bsp143I	GATC	6 cut(s)	346, 448, 460, 696, 730, 740
BspACI	CCGC	2 cut(s)	5, 469
BspANI	GGCC	2 cut(s)	49, 135
BspCNI	CTCAG	2 cut(s)	272, 433
BspFNI	CGCG	1 cut(s)	471
BspHI	TCATGA	1 cut(s)	295
BspLI	GGNNCC	1 cut(s)	124
BspMAI	CTGCAG	1 cut(s)	649
BspMI	ACCTGC	1 cut(s)	509
BspPI	GGATC	1 cut(s)	443
BspT107I	GGYRCC	1 cut(s)	122
BsrDI	GCAATG	1 cut(s)	136
BsrFI	RCCGGY	1 cut(s)	125
BssAI	RCCGGY	1 cut(s)	125
BssECI	CCNNGG	1 cut(s)	667
BssMI	GATC	6 cut(s)	346, 448, 460, 696, 730, 740
BssNAI	GTATAC	1 cut(s)	482
BssSI	CACGAG	1 cut(s)	767
Bst1107I	GTATAC	1 cut(s)	482
Bst2BI	CACGAG	1 cut(s)	767
Bst2UI	CCWGG	2 cut(s)	393, 668
Bst4CI	ACNGT	3 cut(s)	322, 357, 479
BstC8I	GCNNGC	3 cut(s)	24, 81, 121
BstDEI	CTNAG	2 cut(s)	259, 441
BstF5I	GGATG	4 cut(s)	121, 213, 271, 633
BstFNI	CGCG	1 cut(s)	471
BstKTI	GATC	6 cut(s)	349, 451, 463, 699, 733, 743
BstMBI	GATC	6 cut(s)	346, 448, 460, 696, 730, 740
BstMWI	GCNNNNNNNGC	2 cut(s)	116, 413
BstNI	CCWGG	2 cut(s)	393, 668
BstNSI	RCATGY	1 cut(s)	682
BstSCI	CCNGG	2 cut(s)	391, 666
BstSFI	CTRYAG	1 cut(s)	645
BstUI	CGCG	1 cut(s)	471
BstV1I	GCAGC	2 cut(s)	70, 127
BstX2I	RGATCY	1 cut(s)	740
BstXI	CCANNNNNNTGG	1 cut(s)	66
BstYI	RGATCY	1 cut(s)	740
BstZ17I	GTATAC	1 cut(s)	482
BsuRI	GGCC	2 cut(s)	49, 135
BtsCI	GGATG	4 cut(s)	121, 213, 271, 633
BveI	ACCTGC	1 cut(s)	509
Cac8I	GCNNGC	3 cut(s)	24, 81, 121
CaiI	CAGNNNCTG	1 cut(s)	332
CciI	TCATGA	1 cut(s)	295
Cfr10I	RCCGGY	1 cut(s)	125
Csp6I	GTAC	2 cut(s)	70, 751
CviAII	CATG	2 cut(s)	296, 679
CviQI	GTAC	2 cut(s)	70, 751
DdeI	CTNAG	2 cut(s)	259, 441
DpnI	GATC	6 cut(s)	348, 450, 462, 698, 732, 742
DpnII	GATC	6 cut(s)	346, 448, 460, 696, 730, 740
DriI	GACNNNNNGTC	1 cut(s)	682
EaeI	YGGCCR	2 cut(s)	47, 133
Eam1105I	GACNNNNNGTC	1 cut(s)	682
Eco57I	CTGAAG	1 cut(s)	708
EcoRI	GAATTC	2 cut(s)	228, 301
EcoRII	CCWGG	2 cut(s)	391, 666
FaeI	CATG	2 cut(s)	299, 682
FalI	AAGNNNNNCTT	2 cut(s)	129, 161
FatI	CATG	2 cut(s)	295, 678
FbaI	TGATCA	1 cut(s)	696
FblI	GTMKAC	1 cut(s)	481
Fnu4HI	GCNGC	2 cut(s)	84, 141
FokI	GGATG	4 cut(s)	128, 200, 278, 640
Fsp4HI	GCNGC	2 cut(s)	84, 141
GluI	GCNGC	2 cut(s)	84, 141
HaeIII	GGCC	2 cut(s)	49, 135
HapII	CCGG	1 cut(s)	126
Hin1II	CATG	2 cut(s)	299, 682
HincII	GTYRAC	1 cut(s)	277
HindII	GTYRAC	1 cut(s)	277
HpaII	CCGG	1 cut(s)	126
HphI	GGTGA	2 cut(s)	82, 584
Hpy166II	GTNNAC	5 cut(s)	277, 389, 436, 482, 676
Hpy188I	TCNGA	4 cut(s)	157, 262, 582, 688
Hpy188III	TCNNGA	2 cut(s)	296, 566
Hpy8I	GTNNAC	5 cut(s)	277, 389, 436, 482, 676
HpyAV	CCTTC	2 cut(s)	389, 563
HpyCH4III	ACNGT	3 cut(s)	322, 357, 479
HpyCH4V	TGCA	1 cut(s)	647
HpyF10VI	GCNNNNNNNGC	2 cut(s)	116, 413
HpyF3I	CTNAG	2 cut(s)	259, 441
Hsp92II	CATG	2 cut(s)	299, 682
Ksp22I	TGATCA	1 cut(s)	696
Kzo9I	GATC	6 cut(s)	346, 448, 460, 696, 730, 740
Lsp1109I	GCAGC	2 cut(s)	70, 127
LweI	GCATC	1 cut(s)	106
MaeIII	GTNAC	1 cut(s)	521
MalI	GATC	6 cut(s)	348, 450, 462, 698, 732, 742
MboI	GATC	6 cut(s)	346, 448, 460, 696, 730, 740
MboII	GAAGA	1 cut(s)	701
MflI	RGATCY	1 cut(s)	740
MlsI	TGGCCA	1 cut(s)	135
MluCI	AATT	3 cut(s)	228, 301, 402
MluNI	TGGCCA	1 cut(s)	135
MmeI	TCCRAC	1 cut(s)	535
Mox20I	TGGCCA	1 cut(s)	135
MscI	TGGCCA	1 cut(s)	135
MseI	TTAA	1 cut(s)	747
Msp20I	TGGCCA	1 cut(s)	135
MspA1I	CMGCKG	1 cut(s)	202
MspI	CCGG	1 cut(s)	126
MspR9I	CCNGG	2 cut(s)	393, 668
MvaI	CCWGG	2 cut(s)	393, 668
MvnI	CGCG	1 cut(s)	471
MwoI	GCNNNNNNNGC	2 cut(s)	116, 413
NdeII	GATC	6 cut(s)	346, 448, 460, 696, 730, 740
NlaIII	CATG	2 cut(s)	299, 682
NlaIV	GGNNCC	1 cut(s)	124
NmeAIII	GCCGAG	1 cut(s)	25
NspI	RCATGY	1 cut(s)	682
PagI	TCATGA	1 cut(s)	295
PciI	ACATGT	1 cut(s)	678
PcsI	WCGNNNNNNNCGW	1 cut(s)	382
PflMI	CCANNNNNTGG	1 cut(s)	673
PkrI	GCNGC	2 cut(s)	85, 142
PscI	ACATGT	1 cut(s)	678
Psp6I	CCWGG	2 cut(s)	391, 666
PspGI	CCWGG	2 cut(s)	391, 666
PspN4I	GGNNCC	1 cut(s)	124
PstI	CTGCAG	1 cut(s)	649
PstNI	CAGNNNCTG	1 cut(s)	332
PsuI	RGATCY	1 cut(s)	740
PvuII	CAGCTG	1 cut(s)	202
RsaI	GTAC	2 cut(s)	71, 752
RsaNI	GTAC	2 cut(s)	70, 751
SaqAI	TTAA	1 cut(s)	747
SatI	GCNGC	2 cut(s)	84, 141
Sau3AI	GATC	6 cut(s)	346, 448, 460, 696, 730, 740
ScrFI	CCNGG	2 cut(s)	393, 668
SfaNI	GCATC	1 cut(s)	106
SfcI	CTRYAG	1 cut(s)	645
Sse9I	AATT	3 cut(s)	228, 301, 402
SsiI	CCGC	2 cut(s)	5, 469
StyD4I	CCNGG	2 cut(s)	391, 666
TaaI	ACNGT	3 cut(s)	322, 357, 479
TaqI	TCGA	2 cut(s)	226, 232
TasI	AATT	3 cut(s)	228, 301, 402
Tru1I	TTAA	1 cut(s)	747
Tru9I	TTAA	1 cut(s)	747
TseI	GCWGC	2 cut(s)	83, 140
TspDTI	ATGAA	4 cut(s)	230, 282, 294, 326
Van91I	CCANNNNNTGG	1 cut(s)	673
XapI	RAATTY	2 cut(s)	228, 301
XceI	RCATGY	1 cut(s)	682
XcmI	CCANNNNNNNNNTGG	1 cut(s)	143
XmiI	GTMKAC	1 cut(s)	481

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.