Rorug07G0291100

methyltransferase DDB_G0268948

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0001059
Physical Location & Seq
Forward (+)
28392744 .. 28393215
472 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0291100.1

Sequence Viewer

Length: 222 bp
ATGAAATCATCAACTTGTGGAAACAGAATGGCTTCACTAGCACCAGAGCTGGATACGTGGAGTCTAGTTAAAGAGATGCTGCCACTTCTGTCAAATTCTGCTCCTTTTGCTATTTATCACCAGTATCTTCAGGTACTTCCATCAAGAACCCATCCATGTATGCAGATGAATGGATTTGGTGGGTACATTCTCAGCGGGACCAAGATATGTACCAACAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Methyltransf_11

Protein Analysis

73

Amino Acids

8.07

Weight (kDa)

8.57

Isoelectric Point (pI)

36.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 195
AcsI RAATTY 1 cut(s) 94
AcuI CTGAAG 1 cut(s) 113
AfaI GTAC 3 cut(s) 135, 185, 211
AluBI AGCT 1 cut(s) 49
AluI AGCT 1 cut(s) 49
ApeKI GCWGC 1 cut(s) 79
ApoI RAATTY 1 cut(s) 94
Asp700I GAANNNNTTC 1 cut(s) 31
AspS9I GGNCC 1 cut(s) 198
AsuHPI GGTGA 1 cut(s) 110
AvaII GGWCC 1 cut(s) 198
BbvI GCAGC 1 cut(s) 66
BccI CCATC 2 cut(s) 148, 159
BciVI GTATCC 1 cut(s) 46
BfaI CTAG 2 cut(s) 38, 65
BfuI GTATCC 1 cut(s) 46
BisI GCNGC 1 cut(s) 80
BlsI GCNGC 1 cut(s) 81
Bme18I GGWCC 1 cut(s) 198
BmgT120I GGNCC 1 cut(s) 198
BmiI GGNNCC 1 cut(s) 199
BmsI GCATC 1 cut(s) 66
BsaAI YACGTR 1 cut(s) 57
Bse1I ACTGG 1 cut(s) 121
BseGI GGATG 1 cut(s) 151
BseMII CTCAG 1 cut(s) 205
BseNI ACTGG 1 cut(s) 121
BseXI GCAGC 1 cut(s) 66
BslFI GGGAC 1 cut(s) 211
BsmFI GGGAC 1 cut(s) 211
BspACI CCGC 1 cut(s) 195
BspCNI CTCAG 1 cut(s) 204
BspLI GGNNCC 1 cut(s) 199
BsrI ACTGG 1 cut(s) 121
BstBAI YACGTR 1 cut(s) 57
BstDEI CTNAG 1 cut(s) 191
BstF5I GGATG 1 cut(s) 151
BstMWI GCNNNNNNNGC 2 cut(s) 38, 107
BstV1I GCAGC 1 cut(s) 66
BsuI GTATCC 1 cut(s) 46
BtsCI GGATG 1 cut(s) 151
Cfr13I GGNCC 1 cut(s) 198
Csp6I GTAC 3 cut(s) 134, 184, 210
CviAII CATG 1 cut(s) 156
CviJI RGCY 2 cut(s) 32, 49
CviKI_1 RGCY 2 cut(s) 32, 49
CviQI GTAC 3 cut(s) 134, 184, 210
DdeI CTNAG 1 cut(s) 191
Eco47I GGWCC 1 cut(s) 198
Eco57I CTGAAG 1 cut(s) 113
FaeI CATG 1 cut(s) 159
FaiI YATR 3 cut(s) 157, 161, 208
FaqI GGGAC 1 cut(s) 211
FatI CATG 1 cut(s) 155
FauI CCCGC 1 cut(s) 188
Fnu4HI GCNGC 1 cut(s) 80
FokI GGATG 1 cut(s) 138
Fsp4HI GCNGC 1 cut(s) 80
FspBI CTAG 2 cut(s) 38, 65
GluI GCNGC 1 cut(s) 80
Hin1II CATG 1 cut(s) 159
HinfI GANTC 1 cut(s) 61
HphI GGTGA 1 cut(s) 110
Hpy188III TCNNGA 1 cut(s) 144
HpyCH4IV ACGT 1 cut(s) 56
HpyCH4V TGCA 1 cut(s) 163
HpyF10VI GCNNNNNNNGC 2 cut(s) 38, 107
HpyF3I CTNAG 1 cut(s) 191
HpySE526I ACGT 1 cut(s) 56
Hsp92II CATG 1 cut(s) 159
LmnI GCTCC 1 cut(s) 106
LpnPI CCDG 4 cut(s) 35, 57, 116, 134
Lsp1109I GCAGC 1 cut(s) 66
LweI GCATC 1 cut(s) 66
MaeI CTAG 2 cut(s) 38, 65
MaeII ACGT 1 cut(s) 56
MboII GAAGA 1 cut(s) 119
MluCI AATT 1 cut(s) 94
MlyI GAGTC 1 cut(s) 70
MroXI GAANNNNTTC 1 cut(s) 31
MseI TTAA 1 cut(s) 69
MspA1I CMGCKG 1 cut(s) 195
MwoI GCNNNNNNNGC 2 cut(s) 38, 107
NlaIII CATG 1 cut(s) 159
NlaIV GGNNCC 1 cut(s) 199
PdmI GAANNNNTTC 1 cut(s) 31
PkrI GCNGC 1 cut(s) 81
PleI GAGTC 1 cut(s) 69
PpsI GAGTC 1 cut(s) 69
Ppu21I YACGTR 1 cut(s) 57
PspN4I GGNNCC 1 cut(s) 199
PspPI GGNCC 1 cut(s) 198
RsaI GTAC 3 cut(s) 135, 185, 211
RsaNI GTAC 3 cut(s) 134, 184, 210
SaqAI TTAA 1 cut(s) 69
SatI GCNGC 1 cut(s) 80
Sau96I GGNCC 1 cut(s) 198
SchI GAGTC 1 cut(s) 70
SetI ASST 3 cut(s) 51, 59, 135
SfaNI GCATC 1 cut(s) 66
SinI GGWCC 1 cut(s) 198
Sse9I AATT 1 cut(s) 94
SsiI CCGC 1 cut(s) 195
SspMI CTAG 2 cut(s) 38, 65
TaiI ACGT 1 cut(s) 59
TasI AATT 1 cut(s) 94
Tru1I TTAA 1 cut(s) 69
Tru9I TTAA 1 cut(s) 69
TseI GCWGC 1 cut(s) 79
TspDTI ATGAA 2 cut(s) 17, 182
VpaK11BI GGWCC 1 cut(s) 198
XapI RAATTY 1 cut(s) 94
XmnI GAANNNNTTC 1 cut(s) 31
XspI CTAG 2 cut(s) 38, 65
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.